A.I.M.S algorithms


clusterArg.h
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33 
34 
35 #ifndef AIMS_ROI_CLUSTERARG_H
36 #define AIMS_ROI_CLUSTERARG_H
37 
38 #include <aims/data/data.h>
40 #include <float.h>
41 
42 class Graph;
43 
44 namespace aims
45 {
46 
48  {
49  public:
50  ClusterArgMaker( const std::string & outfilename, Connectivity::Type conn
52  int minsz = 0, const std::string & mtxfile = "",
53  bool mkmesh = true, float maxclear = 5.,
54  float maxerr = 0.1, uint minfac = 50, bool bin = false,
55  float low = -FLT_MAX, float up = FLT_MAX );
57 
58  void setFilename( const std::string & n ) { _fileout = n; }
59  std::string filename() const { return( _fileout ); }
60  void setConnectivity( Connectivity::Type conn ) { _connectivity = conn; }
61  Connectivity::Type connectivity() const { return( _connectivity ); }
62  void setMinClusterSize( int sz ) { _minsize = sz; }
63  int minClusterSize() const { return( _minsize ); }
64  void setTransformationFilename( const std::string & mtxfile )
65  { _matrix = mtxfile; }
66  std::string transformationFilename() const { return( _matrix); }
67  void setMeshFlag( bool x ) { _domesh = x; }
68  bool meshFlag() const { return( _domesh ); }
69  void setDecimationMaxClearance( float x ) { _deciMaxClearance = x; }
70  float decimationMaxClearance() const { return( _deciMaxClearance ); }
71  void setDecimationMaxError( float x ) { _deciMaxError = x; }
72  float decimationMaxError() const { return( _deciMaxError ); }
73  void setMinFacetNumber( uint x ) { _minFacetNumber = x; }
74  uint minFacetNumber() const { return( _minFacetNumber ); }
75  void setBinarize( bool x ) { _binarize = x; }
76  bool binarize() const { return( _binarize ); }
77  void setLowThreshold( float x ) { _lowth = x; }
78  float lowThreshold() const { return( _lowth ); }
79  void setUpperThershold( float x ) { _upth = x; }
80  float upperThreshold() const { return( _upth ); }
81 
82  template<typename T> void make( Graph & gr, const AimsData<T> & data );
83 
84  private:
85  std::string _fileout;
86  Connectivity::Type _connectivity;
87  int _minsize;
88  std::string _matrix;
89  bool _domesh;
90  float _deciMaxClearance;
91  float _deciMaxError;
92  uint _minFacetNumber;
93  bool _binarize;
94  float _lowth;
95  float _upth;
96  };
97 
98 }
99 
100 
101 #endif
std::string transformationFilename() const
Definition: clusterArg.h:66
uint minFacetNumber() const
Definition: clusterArg.h:74
ClusterArgMaker(const std::string &outfilename, Connectivity::Type conn=Connectivity::CONNECTIVITY_18_XYZ, int minsz=0, const std::string &mtxfile="", bool mkmesh=true, float maxclear=5., float maxerr=0.1, uint minfac=50, bool bin=false, float low=-FLT_MAX, float up=FLT_MAX)
bool binarize() const
Definition: clusterArg.h:76
void setFilename(const std::string &n)
Definition: clusterArg.h:58
void make(Graph &gr, const AimsData< T > &data)
Definition: clusterArg_d.h:57
float decimationMaxError() const
Definition: clusterArg.h:72
bool meshFlag() const
Definition: clusterArg.h:68
void setDecimationMaxClearance(float x)
Definition: clusterArg.h:69
void setLowThreshold(float x)
Definition: clusterArg.h:77
float decimationMaxClearance() const
Definition: clusterArg.h:70
float upperThreshold() const
Definition: clusterArg.h:80
void setMinFacetNumber(uint x)
Definition: clusterArg.h:73
void setConnectivity(Connectivity::Type conn)
Definition: clusterArg.h:60
void setTransformationFilename(const std::string &mtxfile)
Definition: clusterArg.h:64
void setBinarize(bool x)
Definition: clusterArg.h:75
void setMinClusterSize(int sz)
Definition: clusterArg.h:62
float lowThreshold() const
Definition: clusterArg.h:78
unsigned int uint
Connectivity::Type connectivity() const
Definition: clusterArg.h:61
int minClusterSize() const
Definition: clusterArg.h:63
void setUpperThershold(float x)
Definition: clusterArg.h:79
void setMeshFlag(bool x)
Definition: clusterArg.h:67
std::string filename() const
Definition: clusterArg.h:59
void setDecimationMaxError(float x)
Definition: clusterArg.h:71