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Publications of Y. Cointepas

Articles in journal or book chapters

  1. G. Operto, M. Chupin, B. Batrancourt, M.O. Habert, O. Colliot, H. Benali, C. Poupon, C. Champseix, C. Delmaire, S. Marie, D. Rivière, M. Pelegrini-Issac, V. Perlbarg, R. Trebossen, M. Bottlaender, V. Frouin, A. Grigis, D. Papadopoulos Orfanos, H. Dary, L. Fillon, C. Azouani, A. Bouyahia, C. Fischer, L. Edward, M. Bouin, U. Thoprakarn, J. Li, L. Makkaoui, S. Poret, C. Dufouil, V. Bouteloup, G. Chételat, B. Dubois, S. Lehéricy, J.-F. Mangin, and Y. Cointepas. CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. Neuroinformatics, 2016. [bibtex-entry]


  2. J. Andoh, D. Rivière, J-F. Mangin, E. Artiges, Y. Cointepas, M-L. Paillère-Martinot, J-L. Martinot, and A. Cachia. A low-cost MRI-guided method for TMS coil positioning. Brain Stimulation, 2:123-131, 2009. Keyword(s): brainvisa. [bibtex-entry]


  3. G. Douaud, T. E. Behrens, C. Poupon, Y. Cointepas, S. Jbabdi, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A. C. Bachoud-Lévi, P. Hantraye, and P. Remy. In vivo evidence for the selective subcortical degeneration in Huntington's disease. Neuroimage, 46(4):958-966, 2009. Keyword(s): brainvisa. [bibtex-entry]


  4. A. Cachia, M.-L. Paillère-Martinot, A. Galinowski, D. Januel, R. De Beaurepaire, F. Bellivier, E. Artiges, T. Gallarda, J. Andoh, D. Bartrés-Faz, E. Duchesnay, D. Rivière, Y. Cointepas, M. Plaze, J.-F. Mangin, and J.-L. Martinot. Cortical folding abnormalities in schizophrenia patients with resistant auditory hallucinations. Neuroimage, 39(3):927-935, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


  5. S. Chanraud, M. Reynaud, M. Wessa, J. Penttilä, N. Kostogianni, A. Cachia, E. Artiges, F. Delain, M. Perrin, H-J. Aubin, Y. Cointepas, C. Martelli, and J-L. Martinot. Diffusion tensor tractography in mesencephalic bundles: relation to mental flexibility in detoxified alcohol-dependent subjects. Neuropsychopharmacology, 34(5):1223-1232, 2008. Keyword(s): brainvisa. [bibtex-entry]


  6. J. Dubois, G. Dehaene-Lambertz, M. Perrin, J.-F. Mangin, Y. Cointepas, E. Duchesnay, D. Le Bihan, and L. Hertz-Pannier. Asynchrony of the early maturation of white matter bundles in healthy infants: quantitative landmarks revealed noninvasively by diffusion tensor imaging. Hum. Brain Mapp., 29(1):14-27, 2008. Keyword(s): brainvisa. [bibtex-entry]


  7. J. Dubois, G. Dehaene-Lambertz, C. Soarès, Y. Cointepas, D. Le Bihan, and L. Hertz-Pannier. Microstructural correlates of infant functional development: example of the visual pathways. J Neurosci., 28(8):1943-8, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  8. M. Perrin, Y. Cointepas, A. Cachia, C. Poupon, B. Thirion, D. Rivière, P. Cathier, V. El Kouby, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging. Int J Biomed Imaging, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  9. J. Dubois, L. Hertz-Pannier, G. Dehaene-Lambertz, Y. Cointepas, and D. Le Bihan. Assessment of the early organization and maturation of infants' cerebral white matter fiber bundles: a feasibility study using quantitative diffusion tensor imaging and tractography. Neuroimage, 30(4):1121-32, 2006. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  10. P. Kochunov, J.-F. Mangin, T.R. Coyle, J. L. Lancaster, P.M. Thompson, D. Rivière, Y. Cointepas, J. Régis, A. Schlosser, D.R. Royall, K. Zilles, J. Mazziotta, A.W. Toga, and P. T. Fox. Age-related morphology trends of cortical sulci. Hum Brain Mapp., 26(3):210-220, 2005. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  11. J.-F. Mangin, D. Rivière, A. Cachia, E. Duchesnay, Y. Cointepas, D. Papadopoulos-Orfanos, D. L. Collins, A. C. Evans, and J. Régis. Object-based morphometry of the cerebral cortex. IEEE Trans. Med. Imag., 23(8):968-982, Aug. 2004. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  12. J.-F. Mangin, D. Rivière, A. Cachia, E. Duchesnay, Y. Cointepas, D. Papadopoulos-Orfanos, P. Scifo, T. Ochiai, F. Brunelle, and J. Régis. A framework to study the cortical folding patterns. Neuroimage, 23:S129-S138, 2004. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


Conference articles

  1. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa. [bibtex-entry]


  2. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  3. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  4. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, Toronto, Sep. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  5. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. Anatomist: a python framework for interactive 3D visualization of neuroimaging data. In Python in Neuroscience workshop, 2011. Keyword(s): brainvisa. [bibtex-entry]


  6. Y. Cointepas, D. Geffroy, N. Souedet, I. Denghien, and D. Rivière. The BrainVISA project: a shared software development infrastructure for biomedical imaging research. In Proc. 16th HBM, 2010. Keyword(s): brainvisa. [bibtex-entry]


  7. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  8. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. BrainVISA: an extensible software environment for sharing multimodal neuroimaging data and processing tools. In Proc. 15th HBM, 2009. Keyword(s): brainvisa. [bibtex-entry]


  9. A. Dubois, J. Dauguet, N. Souedet, A. S. Hérard, D. Rivière, Y. Cointepas, G. Bonvento, P. Hantraye, and T. Delzescaux. BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the 3D reconstruction of anatomo-functional brain sections in rodents. In 38th annual meeting of the Society for Neuroscience, Washington, 2008. Keyword(s): brainvisa. [bibtex-entry]


  10. P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, D. Rivière, C. Poupon, and J.-F. Mangin. Connectivity-based parcellation of the cortical surface using Q-ball imaging. In 5th Proc. IEEE ISBI, Paris, France, pages 903-906, May 2008. [bibtex-entry]


  11. J.-F. Mangin, V. El Kouby, P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, and C. Poupon. The structural paradigm when analyzing diffusion data. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. Keyword(s): brainvisa. [bibtex-entry]


  12. A. Barbot, D. P. Schwartz, K. N'Diaye, A. Bellio, J. Mattout, M. Pélégrini-Issac, Y. Cointepas, D. Rivière, and A. Ducorps. A MEG/EEG analysis toolbox for BrainVISA. In Hum. Brain Mapp., Florence, 2006. Keyword(s): brainvisa, meeg. [bibtex-entry]


  13. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  14. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, Anatomy, brainvisa. [bibtex-entry]


  15. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging in patients with early Huntington's disease reveals frontal and striatal abnormalities. In 57th Annual Meeting of the American Academy of Neurology, 2005. Keyword(s): brainvisa. [bibtex-entry]


  16. V. El Kouby, Y. Cointepas, C. Poupon, J.-B. Poline, and J.-F. Mangin. Main fiber tracks detection through classification of MR diffusion imaging data. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  17. V. El Kouby, Y. Cointepas, C. Poupon, D. Rivière, N. Golestani, J.-B. Poline, D. Le Bihan, and J.-F. Mangin. MR Diffusion-Based Inference of a Fiber Bundle Model from a Population of Subjects. In MICCAI'05, pages 196-204, 2005. Keyword(s): Diffusion, LongConfPaper, brainvisa. [bibtex-entry]


  18. P. Kochunov, D. Rivière, J. L. Lancaster, J.-F. Mangin, Y. Cointepas, D. Papadopoulos-Orfanos, D. C. Glahn, P. T. Fox, and J. Rogers. Development of high-resolution MRI imaging and image processing for live and post-mortem primates (Papio hamadryas). In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Sulci, Anatomy. [bibtex-entry]


  19. M. Perrin, Y. Cointepas, C. Poupon, B. Rieul, N. Golestani, C. Pallier, D. Rivière, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Regularized probabilistic tracking with Q-ball fields. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  20. M. Perrin, Y. Cointepas, C. Poupon, B. Rieul, N. Golestani, D. Rivière, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Fiber tracking in Q-ball fields using regularized particle trajectories. In Inf Process Med Imaging, volume 19, pages 52-63, 2005. Keyword(s): Diffusion, LongConfPaper, brainvisa. [bibtex-entry]


  21. D. P. Schwartz, K. N'Diaye, A. Bellio, J. Mattout, M. Pélégrini-Issac, Y. Cointepas, D. Rivière, and A. Ducorps. A MEG/EEG analysis toolbox for BrainVISA. In Hum. Brain Mapp., Budapest, Hungary, 2004. Keyword(s): brainvisa, meeg. [bibtex-entry]


  22. Y. Cointepas, C. Poupon, R. Maroy, D. Rivière, D. Le Bihan, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for analysis of diffusion MR images. In Proc. 9th HBM CD-Rom Neuroimage vol 19 (2), New York,, June19--22 2003. Keyword(s): brainvisa. [bibtex-entry]


  23. D. Rivière, J. Régis, Y. Cointepas, D. Papadopoulos-Orfanos, A. Cachia, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for structural morphometry of the cortical sulci. In Proc. 9th HBM, Neuroimage 19(2), New York,, pages 934, 2003. Keyword(s): brainvisa. [bibtex-entry]


  24. Y. Cointepas, J.-F. Mangin, L. Garnero, J.-B. Poline, and H. Benali. BrainVISA: Software platform for visualization and analysis of multi-modality brain data. In Proc. 7th HBM, Brighton, United Kingdom, pages S98, 2001. Keyword(s): brainvisa, Computer Science. [bibtex-entry]



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Last modified: Fri Mar 29 09:53:36 2019

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