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Publications about 'brainvisa'

Articles in journal or book chapters

  1. S. Lefranc, P. Roca, M. Perrot, C. Poupon, D. Le Bihan, J.-F. Mangin, and D. Rivière. Groupwise connectivity-based parcellation of the whole human cortical surface using watershed-driven dimension reduction. Medical Image Analysis, 30:11-29, 2016. Keyword(s): brainvisa, lnao. [bibtex-entry]


  2. F. De Guio, J.-F. Mangin, D. Rivière, M. Perrot, C. D. Molteno, S. W. Jacobson, E. M. Meintjes, and J. L. Jacobson. A study of cortical morphology in children with fetal alcohol spectrum disorders. Hum. Brain Mapp., 35(5):2285-2296, 2014. Keyword(s): brainvisa, Sulci. [bibtex-entry]


  3. P. Kochunov, W. Rogers, J.-F. Mangin, and J. L. Lancaster. A Library of Cortical Morphology Analysis Tools to Study Development, Aging and Genetics of Cerebral Cortex. Neuroinformatics, 10(1):81-96, 2012. Keyword(s): brainvisa. [bibtex-entry]


  4. G. Operto, D. Rivière, B. Fertil, R. Bulot, J.-F. Mangin, and O. Coulon. Structural Analysis of fMRI data: a surface-based framework for multi-subject studies. Medical Image Analysis, 2012. Keyword(s): brainvisa, lnao. [bibtex-entry]


  5. Z. Y. Sun, S. Klöppel, D. Rivière, M. Perrot, R. Frackowiak, H. Siebner, and J.-F. Mangin. The effect of handedness on the shape of the central sulcus. Neuroimage, 60(1):332-9, 2012. Keyword(s): brainvisa, lnao. [bibtex-entry]


  6. F. Leroy, J.-F. Mangin, F. Rousseau, H. Glasel, L. Hertz-Pannier, J. Dubois, and G. Dehaene-Lambertz. Atlas-free surface reconstruction of the cortical grey-white interface in infants. PLoS One, 6(11):e27128, 2011. Keyword(s): brainvisa, lnao. [bibtex-entry]


  7. M. Perrot, D. Rivière, and J.-F. Mangin. Cortical sulci recognition and spatial normalization. Medical Image Analysis, 15(4):529-550, 2011. Keyword(s): sulci, SPAM, brainvisa. [bibtex-entry]


  8. J. Régis, M. Tamura, M. Park, A. McGonigal, D. Rivière, O. Coulon, F. Bartolomei, N. Girard, D. Figarella-Branger, P. Chauvel, and J.-F. Mangin. Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with MRI–negative frontal lobe epilepsy. Neurosurgery, 69(1):80-94, 2011. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  9. J. Andoh, D. Rivière, J-F. Mangin, E. Artiges, Y. Cointepas, M-L. Paillère-Martinot, J-L. Martinot, and A. Cachia. A low-cost MRI-guided method for TMS coil positioning. Brain Stimulation, 2:123-131, 2009. Keyword(s): brainvisa. [bibtex-entry]


  10. G. Douaud, T. E. Behrens, C. Poupon, Y. Cointepas, S. Jbabdi, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A. C. Bachoud-Lévi, P. Hantraye, and P. Remy. In vivo evidence for the selective subcortical degeneration in Huntington's disease. Neuroimage, 46(4):958-966, 2009. Keyword(s): brainvisa. [bibtex-entry]


  11. J. Dubois, L. Hertz-Pannier, A. Cachia, J.-F. Mangin, D. Le Bihan, and G. Dehaene-Lambertz. Structural asymmetries in the infant language and sensori-motor networks. Cereb. Cortex, 19(2):414-423, 2009. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  12. J. Penttilä, A. Cachia, J.-L. Martinot, D. Ringuenet, M. Wessa, J. Houenou, A. Galinowski, F. Bellivier, T. Gallarda, E. Duchesnay, E. Artiges, M. Leboyer, J.-P. Olié, J.-F. Mangin, and M.-L. Paillère-Martinot. Cortical folding difference between patients with early-onset and patients with intermediate-onset bipolar disorder. Bipolar Disorder, 11(4):361-70, 2009. Keyword(s): brainvisa. [bibtex-entry]


  13. J. Penttilä, M-L Paillère-Martinot, J-L Martinot, D. Ringuenet, A. Galinowski, J. Houenou, F. Bellivier, M. Wessa, E. Artiges, T. Gallarda, P. Bruguière, F. Pinabel, M. Leboyer, J-P Olié, E. Duchesnay, J-F Mangin, and A. Cachia. Cortical folding in patients with bipolar disorder or unipolar depression. J Psychiatry Neurosci., 34(2):127-35, 2009. Keyword(s): brainvisa. [bibtex-entry]


  14. J. Andoh, E Artiges, C Pallier, D. Rivière, J.-F. Mangin, M. L. Paillère-Martinot, and J.-L. Martinot. Priming frequencies of transcranial magnetic stimulation over Wernicke's area modulate word detection. Cereb. Cortex, 18(1):210-6, 2008. Keyword(s): brainvisa. [bibtex-entry]


  15. A. Cachia, M.-L. Paillère-Martinot, A. Galinowski, D. Januel, R. De Beaurepaire, F. Bellivier, E. Artiges, T. Gallarda, J. Andoh, D. Bartrés-Faz, E. Duchesnay, D. Rivière, Y. Cointepas, M. Plaze, J.-F. Mangin, and J.-L. Martinot. Cortical folding abnormalities in schizophrenia patients with resistant auditory hallucinations. Neuroimage, 39(3):927-935, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


  16. S. Chanraud, M. Reynaud, M. Wessa, J. Penttilä, N. Kostogianni, A. Cachia, E. Artiges, F. Delain, M. Perrin, H-J. Aubin, Y. Cointepas, C. Martelli, and J-L. Martinot. Diffusion tensor tractography in mesencephalic bundles: relation to mental flexibility in detoxified alcohol-dependent subjects. Neuropsychopharmacology, 34(5):1223-1232, 2008. Keyword(s): brainvisa. [bibtex-entry]


  17. M. D. Cykowski, O. Coulon, P. Kochunov, K. Amunts, J. L. Lancaster, A.R. Laird, D. C. Glahn, and P. T. Fox. The central sulcus: an observer-independent characterization of sulcal landmarks and depth asymmetry. Cerebral Cortex, 18(9):1999-2009, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  18. M. D. Cykowski, P Kochunov, R. J. Ingham, J. C. Ingham, J.-F. Mangin, D. Rivière, J. L. Lancaster, and P. T. Fox. Perisylvian Sulcal Morphology and Cerebral Asymmetry Patterns in Adults Who Stutter. Cereb. Cortex, 18(3):571-83, 2008. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  19. J. Dubois, M. Benders, C. Borradori-Tolsa, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S. V. Sizonenko, S. K. Warfield, J.-F. Mangin, and P. S. Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development. Brain, 131(8):2028-41, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


  20. J. Dubois, M. Benders, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S.V. Sizonenko, C. Borradori-Tolsa, J.-F. Mangin, and P. S. Hüppi. Mapping the early cortical folding process in the preterm newborn brain. Cereb. Cortex, 18(6):1444-54, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


  21. J. Dubois, G. Dehaene-Lambertz, M. Perrin, J.-F. Mangin, Y. Cointepas, E. Duchesnay, D. Le Bihan, and L. Hertz-Pannier. Asynchrony of the early maturation of white matter bundles in healthy infants: quantitative landmarks revealed noninvasively by diffusion tensor imaging. Hum. Brain Mapp., 29(1):14-27, 2008. Keyword(s): brainvisa. [bibtex-entry]


  22. J. Dubois, G. Dehaene-Lambertz, C. Soarès, Y. Cointepas, D. Le Bihan, and L. Hertz-Pannier. Microstructural correlates of infant functional development: example of the visual pathways. J Neurosci., 28(8):1943-8, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  23. A. Dubois, A. S. Hérard, G. Flandin, E. Duchesnay, L. Besret, V. Frouin, P. Hantraye, G. Bonvento, and T. Delzescaux. Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation. Neuroimage, 40(2):482-494, 2008. Keyword(s): brainvisa. [bibtex-entry]


  24. S. Epelbaum, P. Pinel, R. Gaillard, C. Delmaire, M. Perrin, S. Dupont, S. Dehaene, and L. Cohen. Pure alexia as a disconnection syndrome: new diffusion imaging evidence for an old concept. Cortex, 44(8):962-74, 2008. Keyword(s): Diffusion, brainvisa, U562, CENIR, UPMC. [bibtex-entry]


  25. E. Jouvent, J.-F. Mangin, R. Porcher, A. Viswanathan, M. O'Sullivan, J.-P. Guichard, M. Dichgans, M.-G. Bousser, and H. Chabriat. Cortical changes in cerebral small vessel diseases: a 3D MRI study of cortical morphology in CADASIL. Brain, 131(8):2201-8, 2008. Keyword(s): brainvisa. [bibtex-entry]


  26. P. Kochunov, P.M. Thompson, T.R. Coyle, J. L. Lancaster, V. Kochunov, D.R. Royall, J.-F. Mangin, D. Rivière, and P. T. Fox. Relationship among neuroimaging indices of cerebral health during normal aging. Hum. Brain Mapp., 29(1):36-45, 2008. Keyword(s): Sulci, Diffusion, brainvisa. [bibtex-entry]


  27. R. Maroy, R. Boisgard, C. Comtat, V. Frouin, P. Cathier, E. Duchesnay, F. Dollé, P. E.Nielsen, R. Trébossen, and B. Tavitian. Segmentation of rodent whole-body dynamic PET images: an unsupervised method based on voxel dynamics. IEEE Trans Med Imaging, 27(3):342-54, 2008. Keyword(s): brainvisa. [bibtex-entry]


  28. G. Operto, R. Bulot, J.-L. Anton, and O. Coulon. Projection of fMRI data onto the cortical surface using anatomically-informed convolution kernels. Neuroimage, 39(1):127-135, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  29. M. Perrin, Y. Cointepas, A. Cachia, C. Poupon, B. Thirion, D. Rivière, P. Cathier, V. El Kouby, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging. Int J Biomed Imaging, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  30. J. Dauguet, T. Delzescaux, F. Condé, J.-F. Mangin, N. Ayache, P. Hantraye, and V. Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. J Neurosci Methods, 164(1):191-204, 2007. Keyword(s): Registration, brainvisa. [bibtex-entry]


  31. A. Dubois, J. Dauguet, A.S. Hérard, L. Besret, E. Duchesnay, V. Frouin, P. Hantraye, G. Bonvento, and T. Delzescaux. Automated three-dimensional analysis of histological and autoradiographic rat brain sections: application to an activation study. J Cereb Blood Flow Metab., 27(10):1742-55, 2007. Keyword(s): brainvisa. [bibtex-entry]


  32. J. Houenou, M. Wessa, G. Douaud, M. Leboyer, S. Chanraud, M. Perrin, C. Poupon, J.-L. Martinot, and M.-L. Paillère-Martinot. Increased white matter connectivity in euthymic bipolar patients: diffusion tensor tractography between the subgenual cingulate and the amygdalo-hippocampal complex. Mol Psychiatry, 12(11):1001-10, 2007. Keyword(s): brainvisa. [bibtex-entry]


  33. T.R. Coyle, P. Kochunov, R. D. Patel, F. G. Nery, J. L. Lancaster, J.-F. Mangin, D. Rivière, D.R. Pillow, G.J. Davis, M.A. Nicoletti, E. Serap Monkul, P. T. Fox, and J.C. Soares. Cortical sulci and bipolar disorder. Neuroreport, 17(16):1739-42, 2006. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  34. J. Dubois, L. Hertz-Pannier, G. Dehaene-Lambertz, Y. Cointepas, and D. Le Bihan. Assessment of the early organization and maturation of infants' cerebral white matter fiber bundles: a feasibility study using quantitative diffusion tensor imaging and tractography. Neuroimage, 30(4):1121-32, 2006. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  35. J. Dubois, C. Poupon, F. Lethimonnier, and D. Le Bihan. Optimized diffusion gradient orientation schemes for corrupted clinical DTI data sets. MAGMA, 19(3):134-43, 2006. Keyword(s): brainvisa. [bibtex-entry]


  36. P. Kochunov, J.-F. Mangin, T.R. Coyle, J. L. Lancaster, P.M. Thompson, D. Rivière, Y. Cointepas, J. Régis, A. Schlosser, D.R. Royall, K. Zilles, J. Mazziotta, A.W. Toga, and P. T. Fox. Age-related morphology trends of cortical sulci. Hum Brain Mapp., 26(3):210-220, 2005. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  37. M. Perrin, C. Poupon, B. Rieul, P. Leroux, A. Constantinesco, J.-F. Mangin, and D. Le Bihan. Validation of q-ball imaging with a diffusion fibre-crossing phantom on a clinical scanner. Phil. Trans. R. Soc. B, 360:881-891, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  38. E. Balzamo, P. Marquis, P. Chauvel, and J. Régis. Short-latency components of evoked potentials to median nerve stimulation recorded by intracerebral electrodes in the human pre-and postcentral areas. Clinical Neurophysiology, 115(7):1616-1623, 2004. Keyword(s): brainvisa. [bibtex-entry]


  39. F. Bartolomei, E. Barbeau, M. Gavaret, M. Guye, A. McGonigal, J. Régis, and P. Chauvel. Cortical stimulation study of the role of rhinal cortex in deja vu and reminiscence of memories. Neurology, 63(5):858-864, 2004. Keyword(s): brainvisa. [bibtex-entry]


  40. J.-F. Mangin, F. Poupon, E. Duchesnay, D. Rivière, A. Cachia, D. L. Collins, A. C. Evans, and J. Régis. Brain Morphometry using 3D Moment Invariants. Medical Image Analysis, 8:187-196, 2004. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  41. J.-F. Mangin, D. Rivière, A. Cachia, E. Duchesnay, Y. Cointepas, D. Papadopoulos-Orfanos, D. L. Collins, A. C. Evans, and J. Régis. Object-based morphometry of the cerebral cortex. IEEE Trans. Med. Imag., 23(8):968-982, Aug. 2004. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  42. J.-F. Mangin, D. Rivière, A. Cachia, E. Duchesnay, Y. Cointepas, D. Papadopoulos-Orfanos, P. Scifo, T. Ochiai, F. Brunelle, and J. Régis. A framework to study the cortical folding patterns. Neuroimage, 23:S129-S138, 2004. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]


  43. T. Ochiai, S. Grimault, D. Scavarda, G. Roch, T. Hori, D. Rivière, J.-F. Mangin, and J. Régis. Sulcal pattern and morphology of the superior temporal sulcus. Neuroimage, 22(2):706-719, 2004. Keyword(s): brainvisa. [bibtex-entry]


  44. D. Rivière, J.-F. Mangin, D. Papadopoulos-Orfanos, J.-M. Martinez, V. Frouin, and J. Régis. Automatic recognition of cortical sulci of the Human Brain using a congregation of neural networks. Medical Image Analysis, 6(2):77-92, 2002. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  45. J.-F. Mangin, V. Frouin, J. Régis, I. Bloch, P. Belin, and Y. Samson. Towards Better Management of Cortical Anatomy in Multi-modal Multi-individual Brain Studies. Physica Medica, 12(Supplement 1):103-107, June 1996. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  46. J.-F. Mangin, V. Frouin, I. Bloch, J. Régis, and J. Lopez-Krahe. From 3D Magnetic Resonance Images to Structural Representations of the Cortex Topography Using Topology Preserving Deformations. Journal of Mathematical Imaging and Vision, 5(4):297-318, 1995. Keyword(s): Sulci, brainvisa. [bibtex-entry]


Conference articles

  1. S. Lefranc, Z. Y. Sun, P. Roca, C. Poupon, D. Le Bihan, J.-F. Mangin, and D. Rivière. Concomitant variability of the central sulcus morphology and adjacent patterns. In Proc. Proc. IEEE ISBI, 2015. Keyword(s): brainvisa, lnao. [bibtex-entry]


  2. S. Lefranc, P. Roca, M. Perrot, D. Duclap, C. Poupon, D. Le Bihan, J.-F. Mangin, and D. Rivière. Inter-subject connectivity-based parcellation of the whole human cortical surface. In Proc. 20th HBM, 2014. Keyword(s): brainvisa, lnao. [bibtex-entry]


  3. S. Lefranc, P. Roca, M. Perrot, C. Poupon, O. Coulon, D. Le Bihan, L. Hertz-Pannier, J.-F. Mangin, and D. Rivière. Validation of consistent inter-subject connectivity-based parcellation. In Proc. Proc. IEEE ISBI, 2014. Keyword(s): brainvisa, lnao. [bibtex-entry]


  4. C. Fischer, G. Operto, S. Laguitton, M. Perrot, I. Denghien, D. Rivière, and J.-F. Mangin. Morphologist 2012: the new morphological pipeline of BrainVISA. In Proc. HBM, 2012. Keyword(s): brainvisa, lnao. [bibtex-entry]


  5. G. Operto, G. Auzias, A. Le Troter, M. Perrot, D. Rivière, J. Dubois, P. S. Hüppi, O. Coulon, and J.-F. Mangin. Structural group analysis of cortical curvature and depth patterns in the developing brain. In Proc. 9th Proc. IEEE ISBI, pages 422-425, 2012. Keyword(s): brainvisa, lnao. [bibtex-entry]


  6. G. Auzias, J. Lefèvre, A. Le Troter, C. Fischer, M. Perrot, J. Régis, and O. Coulon. Model-driven harmonic parameterization of the cortical surface. In Proc. MICCAI, volume 14, pages 310-317, 2011. Keyword(s): brainvisa. [bibtex-entry]


  7. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa. [bibtex-entry]


  8. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  9. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  10. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, Toronto, Sep. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  11. D. Rivière, B. Bernhardt, H. Kim, S.-J. Hong, M. Perrot, J.-F. Mangin, J. Régis, N. Bernasconi, and A. Bernasconi. Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies. In Proc. 17th HBM, 2011. Keyword(s): brainvisa, Sulci, Anatomy. [bibtex-entry]


  12. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. Anatomist: a python framework for interactive 3D visualization of neuroimaging data. In Python in Neuroscience workshop, 2011. Keyword(s): brainvisa. [bibtex-entry]


  13. Y. Cointepas, D. Geffroy, N. Souedet, I. Denghien, and D. Rivière. The BrainVISA project: a shared software development infrastructure for biomedical imaging research. In Proc. 16th HBM, 2010. Keyword(s): brainvisa. [bibtex-entry]


  14. P. Roca, A. Tucholka, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Inter-subject Connectivity-based Parcellation of a Patch of Cerebral Cortex. In MICCAI 2010, LNCS 5762, Springer-Verlag, 2010. Keyword(s): brainvisa. [bibtex-entry]


  15. P. Roca, A. Tucholka, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Inter-subject Connectivity-based Parcellation of the Human Post-central Gyrus. In Proc. 16th HBM, 2010. Keyword(s): brainvisa. [bibtex-entry]


  16. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  17. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. BrainVISA: an extensible software environment for sharing multimodal neuroimaging data and processing tools. In Proc. 15th HBM, 2009. Keyword(s): brainvisa. [bibtex-entry]


  18. P. Roca, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. DWI-based parcellation of the human cortex with a new dimension reduction of the connectivity matrix. In Proc. 15th HBM, 2009. Keyword(s): brainvisa. [bibtex-entry]


  19. M. D. Cykowski, O. Coulon, P. Kochunov, J. L. Lancaster, and P. T. Fox. The postcentral sulcus: depth profiles in sulci grouped by cluster analysis. In 14th Human brain Mapping (OHBM), Melbourne, Australia, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  20. A. Dubois, J. Dauguet, N. Souedet, A. S. Hérard, D. Rivière, Y. Cointepas, G. Bonvento, P. Hantraye, and T. Delzescaux. BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the 3D reconstruction of anatomo-functional brain sections in rodents. In 38th annual meeting of the Society for Neuroscience, Washington, 2008. Keyword(s): brainvisa. [bibtex-entry]


  21. P. Kochunov, D. C. Glahn, P. T. Fox, O. Coulon, K. Zilles, w. Shelledy, J. L. Lancaster, J. Blangero, and J. Rogers. Genetics of cerebral sulcation: does genetics offer a new way of sulcal classification ?. In 14th Human brain Mapping (OHBM), Melbourne, Australia, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  22. G. Operto, C. Clouchoux, R. Bulot, J.-L. Anton, and O. Coulon. Surface-based structural group analysis of fMRI data. In MICCAI, volume 5241, New York, USA, pages 959-966, 2008. Springer-Verlag. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  23. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa. [bibtex-entry]


  24. A. Tucholka, B. Thirion, M. Perrot, P. Pinel, J.-F. Mangin, and J.-B. Poline. Probabilistic anatomo-functional parcellation of the cortex: how many regions?. In 11thProc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. Keyword(s): brainvisa. [bibtex-entry]


  25. A. Tucholka, B. Thirion, P. Pinel, J.-B. Poline, and J.-F. Mangin. Triangulating cortical functional networks with anatomical landmarks. In 5th Proc. IEEE ISBI, Paris, France, pages 612-615, May 2008. Keyword(s): brainvisa. [bibtex-entry]


  26. M. D. Cykowski, O. Coulon, P. Kochunov, and P. T. Fox. Central sulcus depth profiles following automated sulcal recognition and parameterization. In 13th Human Brain Mapping (OHBM), Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  27. M. D. Cykowski, O. Coulon, P. Kochunov, R. J. Ingham, J. C. Ingham, and P. T. Fox. The primary sensorimotor cortex of adults who stutter: evidence for atypical organization detected through automated central sulcus parameterization. In 13th Human Brain Mapping (OHBM), Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  28. J.-F. Mangin, V. El Kouby, P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, and C. Poupon. The structural paradigm when analyzing diffusion data. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. Keyword(s): brainvisa. [bibtex-entry]


  29. Z. Y. Sun, D. Rivière, F. Poupon, J. Régis, and J.-F. Mangin. Automatic inference of sulcus patterns using 3D moment invariants. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 515-22, 2007. Keyword(s): brainvisa. [bibtex-entry]


  30. A. Barbot, D. P. Schwartz, K. N'Diaye, A. Bellio, J. Mattout, M. Pélégrini-Issac, Y. Cointepas, D. Rivière, and A. Ducorps. A MEG/EEG analysis toolbox for BrainVISA. In Hum. Brain Mapp., Florence, 2006. Keyword(s): brainvisa, meeg. [bibtex-entry]


  31. C. Clouchoux, O. Coulon, J.-L Anton, and J.-F. Mangin, and J. Régis. A new cortical surface parcellation model and its automatic implementation. In Proc. 9th MICCAI, LNCS 4191, Copenhaegen, Denmark, pages 193-200, Oct. 2006. Springer Verlag. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  32. C. Clouchoux, O. Coulon, G. Operto, D. Rivière, K. Dauchot, A. Sirigu, and J.L. Anton. Cortical localization via hemisphere surface parameterization. In Human Brain Mapping, Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  33. O. Coulon, C. Clouchoux, G. Operto, K. Dauchot, A. Sirigu, and J.L. Anton. Cortical localization via surface parametrization : a sulcus-based approach. In 12th Human Brain Mapping (OHBM), Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  34. G. Operto, C. Clouchoux, J.L. Anton, A. Cachia, K. Dauchot, A. Sirigu, R. Bulot, and O. Coulon. Cortical localization via surface parametrization : a gyrus-based approach. In 12th Human Brain Mapping (OHBM), Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  35. M. Perrin, C. Poupon, D. Rivière, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Q-ball imaging simulation with a numerical diffusion fiber crossing phantom. In 12th HBM Neuroimage, number 1164, Florence, Italie, 2006. Keyword(s): brainvisa. [bibtex-entry]


  36. C. Poupon, F. Poupon, L. Allirol, and J.-F. Mangin. A database dedicated to anatomo-functional study of human brain connectivity. In 12th HBM Neuroimage, number 646, Florence, Italie, 2006. Keyword(s): brainvisa. [bibtex-entry]


  37. C. Clouchoux, O. Coulon, D. Rivière, A. Cachia, J.-F. Mangin, and J. Régis. Anatomically constrained surface parameterization for cortical localization. In MICCAI'05, pages 344-351, 2005. Keyword(s): Sulci, LongConfPaper, brainvisa, cortical_surface. [bibtex-entry]


  38. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  39. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, Anatomy, brainvisa. [bibtex-entry]


  40. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging in patients with early Huntington's disease reveals frontal and striatal abnormalities. In 57th Annual Meeting of the American Academy of Neurology, 2005. Keyword(s): brainvisa. [bibtex-entry]


  41. V. El Kouby, Y. Cointepas, C. Poupon, J.-B. Poline, and J.-F. Mangin. Main fiber tracks detection through classification of MR diffusion imaging data. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  42. V. El Kouby, Y. Cointepas, C. Poupon, D. Rivière, N. Golestani, J.-B. Poline, D. Le Bihan, and J.-F. Mangin. MR Diffusion-Based Inference of a Fiber Bundle Model from a Population of Subjects. In MICCAI'05, pages 196-204, 2005. Keyword(s): Diffusion, LongConfPaper, brainvisa. [bibtex-entry]


  43. M. Perrin, Y. Cointepas, C. Poupon, B. Rieul, N. Golestani, C. Pallier, D. Rivière, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Regularized probabilistic tracking with Q-ball fields. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  44. M. Perrin, Y. Cointepas, C. Poupon, B. Rieul, N. Golestani, D. Rivière, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Fiber tracking in Q-ball fields using regularized particle trajectories. In Inf Process Med Imaging, volume 19, pages 52-63, 2005. Keyword(s): Diffusion, LongConfPaper, brainvisa. [bibtex-entry]


  45. C. Poupon, M. Perrin, B. Rieul, J.-F. Mangin, and D. Le Bihan. Validation of Q-ball imaging with a diffusion fiber crossing phantom on a clinical scanner. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  46. C. Clouchoux, O. Coulon, A. Cachia, D. Rivière, J.-F. Mangin, and J. Régis. Towards an anatomically meaningful parameterization of the cortical surface. In MICCAI, volume 3216 of Lecture Notes in Computer Science, St-Malo, France, pages 1046-1047, 2004. Springer-Verlag. Keyword(s): brainvisa. [bibtex-entry]


  47. D. P. Schwartz, K. N'Diaye, A. Bellio, J. Mattout, M. Pélégrini-Issac, Y. Cointepas, D. Rivière, and A. Ducorps. A MEG/EEG analysis toolbox for BrainVISA. In Hum. Brain Mapp., Budapest, Hungary, 2004. Keyword(s): brainvisa, meeg. [bibtex-entry]


  48. Y. Cointepas, C. Poupon, R. Maroy, D. Rivière, D. Le Bihan, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for analysis of diffusion MR images. In Proc. 9th HBM CD-Rom Neuroimage vol 19 (2), New York,, June19--22 2003. Keyword(s): brainvisa. [bibtex-entry]


  49. D. Rivière, J. Régis, Y. Cointepas, D. Papadopoulos-Orfanos, A. Cachia, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for structural morphometry of the cortical sulci. In Proc. 9th HBM, Neuroimage 19(2), New York,, pages 934, 2003. Keyword(s): brainvisa. [bibtex-entry]


  50. Y. Cointepas, J.-F. Mangin, L. Garnero, J.-B. Poline, and H. Benali. BrainVISA: Software platform for visualization and analysis of multi-modality brain data. In Proc. 7th HBM, Brighton, United Kingdom, pages S98, 2001. Keyword(s): brainvisa, Computer Science. [bibtex-entry]


Miscellaneous

  1. P. Roca, and D. Rivière, and J.-F. Mangin. Etude de l'équation eikonale et nouveaux descripteurs des sillons du cortex. Master's thesis, Supélec, Université Paul Verlaine de Metz, 2007. Keyword(s): brainvisa. [bibtex-entry]



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