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Publications of N. Ayache

Articles in journal or book chapters

  1. J. Dauguet, T. Delzescaux, F. Condé, J.-F. Mangin, N. Ayache, P. Hantraye, and V. Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. J Neurosci Methods, 164(1):191-204, 2007. Keyword(s): Registration, brainvisa. [bibtex-entry]


  2. X. Pennec, N. Ayache, A. Roche, and P. Cachier. Non-rigid MR/US registration for tracking brain deformations. In R. S. Blum and Z. Liu, editors, Multi-Sensor Image Fusion and Its Applications. CRC Press, Boca Raton, FL, First edition, 2006. [bibtex-entry]


  3. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Trans. Med. Imag., 20(1):58-69, 2001. [bibtex-entry]


  4. A. Roche, X. Pennec, G. Malandain, and N. Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Trans. Med. Imag., 20(10):1038-1049, 2001. Keyword(s): Registration. [bibtex-entry]


  5. S. Ourselin, A. Roche, G. Subsol, X. Pennec, and N. Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, Dec. 2000. [bibtex-entry]


  6. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology: Special issue on 3D imaging, 11:71-80, 2000. Keyword(s): Registration. [bibtex-entry]


Conference articles

  1. S. Durrleman, P. Fillard, X. Pennec, A. Trouvé, and N. Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 114-125, July 2009. Springer. [bibtex-entry]


  2. G. Flandin, X. Pennec, A. Roche, W. Penny, N. Ayache, and J.-B. Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  3. G. Flandin, W. Penny, X. Pennec, N. Ayache, and J.-B. Poline. A multisubject anatomo-functional parcellation of the brain. In Proc. 9th HBM, New York,, June19--22 2003. [bibtex-entry]


  4. E. Bardinet, P. Cathier, A. Roche, N. Ayache, and D. Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In T. Dohi and R. Kikinis, editors, Proc. 5th MICCAI, volume 2488 of Lecture Notes in Computer Science, Tokyo, Japan, pages 323-330, Sep. 2002. Springer Verlag. [bibtex-entry]


  5. D. Dormont, E. Bardinet, A. Roche, P. Cachier, F. Bonneville, N. Ayache, P. Cornu, and C. Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, , France, Aug. 2002. [bibtex-entry]


  6. G. Flandin, F. Kherif, X. Pennec, G. Malandain, N. Ayache, and J.-B. Poline. Improved detection sensitivity of functional MRI data using a brain parcellation technique. In Proc. 5th MICCAI, LNCS 2488 (Part I), Tokyo, Japan, pages 467-474, Sep. 2002. Springer Verlag. [bibtex-entry]


  7. G. Flandin, F. Kherif, X. Pennec, D. Rivière, N. Ayache, and J.-B. Poline. A new representation of fMRI data using anatomo-functional constraints. In Proc. 8th HBM, Sendai, Japan, June 2002. [bibtex-entry]


  8. G. Flandin, F. Kherif, X. Pennec, D. Rivière, N. Ayache, and J.-B. Poline. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. In Proc. 1st Proc. IEEE ISBI, Washington, DC, pages 907-910, July 2002. [bibtex-entry]


  9. E. Bardinet, A.C.F. Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, Proc. 4th MICCAI, volume 2208 of Lecture Notes in Computer Science, Utrecht, The Netherlands, pages 957-965, Oct. 2001. Springer Verlag. [bibtex-entry]


  10. P. Cachier, J.-F. Mangin, X. Pennec, D. Rivière, D. Papadopoulos-Orfanos, J. Régis, and N. Ayache. Multisubject Non-rigid Registration of Brain MRI Using Intensity and Geometric Features. In Proc. 4th MICCAI, LNCS-2208, UtrechtThe Netherlands, pages 734-742, 2001. Springer Verlag. Keyword(s): Sulci, Registration, LongConfPaper. [bibtex-entry]


  11. H. Delingette, E. Bardinet, D. Rey, J.-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis, satellite symposia of MICCAI'01, Utrecht, The Netherlands, Oct. 2001. [bibtex-entry]


  12. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, and N. Ayache. Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia. In W.J. Niessen and M.A. Viergever, editors, Proc. 4th MICCAI, volume 2208 of Lecture Notes in Computer Science, Utrecht, The Netherlands, pages 743-751, Oct. 2001. Springer Verlag. [bibtex-entry]


  13. X. Pennec, N. Ayache, A. Roche, and P. Cachier. Non-rigid MR/US registration for tracking brain deformations. In MIAR, volume 2208, Shatin, Hong Kong, pages 79-86, June 2001. IEEE Computer Society Press. [bibtex-entry]


  14. A. S. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 95-105, Oct. 11-14 2000. Springer Verlag. [bibtex-entry]


  15. S. Ourselin, A. Roche, S. Prima, and N. Ayache. Block Matching: a General Framework to Improve Robustness of Rigid Registration of Medical Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 557-566, Oct. 2000. Springer Verlag. [bibtex-entry]


  16. A. Roche, A. Guimond, N. Ayache, and J. Meunier. Multimodal Elastic Matching of Brain Images. In Computer Vision - ECCV 2000, volume 1843 of Lecture Notes in Computer Science, Dublin, Ireland, pages 511-527, June 2000. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  17. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 567-577, Oct. 11-14 2000. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  18. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In Proc. 2th MICCAI, volume 1679 of Lecture Notes in Computer Science, Cambridge, United Kingdom, pages 555-566, Sep. 1999. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  19. A. Roche, G. Malandain, X. Pennec, and N. Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. 1st MICCAI, volume 1496 of Lecture Notes in Computer Science, Cambridge, MA, pages 1115-1124, Oct. 1998. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


Internal reports

  1. A. Roche, X. Pennec, G. Malandain, N. Ayache, and S. Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Technical report 3980, INRIA, July 2000. Keyword(s): Registration. [bibtex-entry]


  2. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. Technical report 3796, INRIA, Nov. 1999. [bibtex-entry]


  3. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. Technical report 3741, INRIA, July 1999. Keyword(s): Registration. [bibtex-entry]


  4. A. Roche, G. Malandain, N. Ayache, and X. Pennec. Multimodal Image Registration by Maximization of the Correlation Ratio. Technical report 3378, INRIA, Aug. 1998. Keyword(s): Registration. [bibtex-entry]



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