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Publications of F. Poupon

Thesis

  1. F. Poupon. Parcellisation systématique du cerveau en volumes d'intérêt. Le cas des structures profondes. PhD thesis, INSA Lyon, Lyon , France, Dec. 1999. Keyword(s): Segmentation. [bibtex-entry]


Articles in journal or book chapters

  1. N. Pyatigorskaya, M. Sharman, J.-C. Corvol, R. Valabregue, L. Yahia-Cherif, F. Poupon, F. Cornier-Dequaire, H. Siebner, S. Klebe, M. Vidailhet, A. Brice, and S. Lehericy. High Nigral Iron Deposition in LRRK2 and Parkin Mutation Carriers Using R2* Relaxometry. Movement Disorders, 30(8):1077-1084, July 2015. [bibtex-entry]


  2. Y. Worbe, L. Marrakchi-Kacem, S. Lecomte, R. Valabregue, F. Poupon, P. Guevara, A. Tucholka, J.-F. Mangin, M. Vidailhet, S. Lehericy, and others. Altered structural connectivity of cortico-striato-pallido-thalamic networks in Gilles de la Tourette syndrome. Brain, 138(2):472-482, 2015. [bibtex-entry]


  3. V. Brion, C. Poupon, O. Riff, S. Aja-Fernández, A. Tristán-Vega, J.-F. Mangin, D. Le Bihan, and F. Poupon. Noise correction for HARDI and HYDI data obtained with multi-channel coils and Sum of Squares reconstruction: An anisotropic extension of the LMMSE. Magnetic resonance imaging, 31(8):1360-1371, 2013. [bibtex-entry]


  4. L. Marrakchi-Kacem, C. Delmaire, P. Guevara, F. Poupon, S. Lecomte, A. Tucholka, P. Roca, J. Yelnik, A. Durr, J.-F. Mangin, and others. Mapping cortico-striatal connectivity onto the cortical surface: a new tractography-based approach to study Huntington disease. PloS one, 8(2):e53135, 2013. [bibtex-entry]


  5. V. Brion, O. Riff, M. Descoteaux, J.-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. The Parallel Kalman Filter: an efficient tool to deal with real-time non central Chi noise correction. SFRMBM, 66:204-224, 2012. [bibtex-entry]


  6. C. Poupon, F. Poupon, A. Roche, and J.-F. Mangin. Real-time magnetic resonance diffusion imaging. 2012. [bibtex-entry]


  7. V. Brion, C. Poupon, O. Riff, S. Aja-Fernández, A. Tristán-Vega, J.-F. Mangin, D. Le Bihan, and F. Poupon. Parallel MRI noise correction: an extension of the LMMSE to non central $\chi$ distributions. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, pp 226-233, 2011. [bibtex-entry]


  8. I. Kezele, M. Descoteaux, C. Poupon, F. Poupon, and J.-F. Mangin. Spherical wavelet transform for ODF sharpening. Medical Image Analysis, 14:332-342, 2010. [bibtex-entry]


  9. C. Poupon, B. Rieul, I. Kezele, M. Perrin, F. Poupon, and J.-F. Mangin. New diffusion phantoms dedicated to the study and validation of HARDI models. Magnetic Resonance in Medicine, 60(6):1276-83, 2008. [bibtex-entry]


  10. C. Poupon, A. Roche, J. Dubois, J.-F. Mangin, and F. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. Medical Image Analysis, 12(5):527-34, 2008. [bibtex-entry]


  11. J.-F. Mangin, F. Poupon, E. Duchesnay, D. Rivière, A. Cachia, D. L. Collins, A. C. Evans, and J. Régis. Brain Morphometry using 3D Moment Invariants. Medical Image Analysis, 8:187-196, 2004. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  12. E. Gerardin, S. Lehéricy, J. B. Pochon, S Tezenas du Montcel, J.-F. Mangin, F. Poupon, Y. Agid, D. Le Bihan, and C. Marsault. Foot, hand, face and eye representation in the human striatum. Cereb Cortex, 13(2):162-9, 2003. [bibtex-entry]


  13. N. Molko, S. Pappata, J.-F. Mangin, F. Poupon, D. Le Bihan, M. G. Bousser, and H. Chabriat. Monitoring disease progression in CADASIL with diffusion magnetic resonance imaging: a study with whole brain histogram analysis. Stroke, 33(12):2902-2908, 2002. Keyword(s): Diffusion. [bibtex-entry]


  14. A. Krainik, S. Lehéricy, H. Duffau, M. Vlaicu, F. Poupon, L. Capelle, P. Cornu, S. Clemenceau, M. Sahel, C. A. Valery, A. L. Boch, J.-F. Mangin, D. Le Bihan, and C. Marsault. Role of the supplementary motor area in motor deficit following medial frontal lobe surgery. Neurology, 57(5):871-878, 2001. Keyword(s): IFR49, AP-HP GH Pitié Salpêtrière Service de Neuroradiologie. [bibtex-entry]


  15. N. Molko, S. Pappata, J.-F. Mangin, C. Poupon, F. Poupon, A. Jobert, D. Le Bihan, M. G. Bousser, and H. Chabriat. Temporal course of cerebral water diffusion in CADASIL: Follow-up study of two years with diffusion tensor imaging (DTI) and histogram analysis. Neurology, 56(8):A258, 2001. [bibtex-entry]


  16. H. Chabriat, S. Pappata, C. Poupon, C. A. Clark, K. Vahedi, F. Poupon, J.-F. Mangin, M. Pachot-Clouard, A. Jobert, D. Le Bihan, and M.-G. Bousser. Clinical Severity in CADASIL related to ultrastructural damage in white matter. In vivo study with diffusion tensor MRI. Stroke, 30:2637-2643, 1999. [bibtex-entry]


  17. J.-F. Mangin, J. Régis, J.-B. Poline, D. Rivière, C. Poupon, F. Poupon, D. Papadopoulos-Orfanos, F. Delaye, O. Pizzato, O. Coulon, S. Crozier, P. Belin, P. Remy, M. Zilbovicius, C. A. Clark, D. Le Bihan, D. Hasboun, S. Lehéricy, D. Dormont, O. de Dreuille, H. Foehrenbach, J.-F. Gaillard, I. Bloch, Y. Samson, and V. Frouin. Place de l'anatomie dans la cartographie fonctionnelle du cerveau. Annales de l'Institut Pasteur. Actualités. La neuro-imagerie, 9(3):243-258, 1998. Keyword(s): Sulci, Diffusion. [bibtex-entry]


Conference articles

  1. Y. Leprince, F. Poupon, T. Delzescaux, D. Hasboun, C. Poupon, and D. Rivière. Combined Laplacian-equivolumic model for studying cortical lamination with ultra high field MRI (7T). In Proc. Proc. IEEE ISBI, 2015. Keyword(s): lnao. [bibtex-entry]


  2. L. Marrakchi-Kacem, C. Delmaire, F. Poupon, P. Guevara, S. Lecomte, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Using tractography to infer basal ganglia's functional subterritories distribution change in Huntington disease. In 1st ATSIP, Sousse, Tunisie, 2014. [bibtex-entry]


  3. N. Pyatigorskaya, M. Sharman, J.-C. Corvol, R. Valabregue, F. Poupon, F. Cornier M. Vidailhet, A. Brice, and S. Lehericy. Nigral Iron Deposition in LRRK2 and Parkin Mutation Carriers Using R2* Relaxometry. In 22th ISMRM, Milan, Italy, 2014. [bibtex-entry]


  4. B. Schmitt, D. Duclap, A. Lebois, P. Guevara, H. Zhang, Y. Assaf, F. Poupon, D. Rivière, Y. Cointepas, D. Le Bihan, J.-F. Mangin, and C. Poupon. A novel probabilistic connectivity atlas for the human connectome: the CONNECT/ARCHI atlas. In Proc. ISMRM, volume 21, pages 3155, 2013. Keyword(s): lnao. [bibtex-entry]


  5. V. Brion, O. Riff, M. Descoleaux, J.-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. The Parallel Kalman Filter: An efficient tool to deal with real-time non central $\chi$ noise correction of HARDI data. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, pages 34-37, 2012. IEEE. [bibtex-entry]


  6. D. Duclap, A. Lebois, B. Schmitt, O. Riff, P. Guevara, L. Marrakchi-Kacem, V. Brion, F. Poupon, J.-F. Mangin, and C. Poupon. Connectomist-2.0: a novel diffusion analysis toolbox for BrainVISA. In 29th ESMRMB, Lisbone, Portugal, 2012. [bibtex-entry]


  7. A. Lebois, B. Schmitt, D. Duclap, F. Poupon, and C. Poupon. A novel diffusion weighted arbitrary spin echo pulse sequence to customize diffusion gradient shapes. In 29th ESMRMB, Lisbone, Portugal, 2012. [bibtex-entry]


  8. L. Marrakchi-Kacem, C. Delmaire, P. Guevara, F. Poupon, J. Yelnik, S. Lecomte, P. Roca, A. Tucholka, A. Durr, J.-F. Mangin, M. Chupin, S. Lehericy, and C. Poupon. Basal ganglia connectivity inferred from tractography: dealing with direct and indirect connections. In 20th ISMRM, Melbourne, Australia, 2012. [bibtex-entry]


  9. V. Brion, I. Kezele, O. Riff, M. Descoteaux, J.-F. Mangin, C. Poupon, and F. Poupon. Real-time Rician noise correction applied to real-time HARDI and HYDI. In Workshop CDMRI of MICCAI, pages 2-13, 2011. [bibtex-entry]


  10. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Distribution of the functional atrophy in the striatum territory of Huntington's patients.. In 19th ISMRM, Montréal, Canada, 2011. [bibtex-entry]


  11. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Using surface connectivity atlases to measure striato-cortical disconnection rate in Huntington disease.. In 19th ISMRM, Montréal, Canada, 2011. [bibtex-entry]


  12. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Analysis of the striato-thalamo-cortical connectivity on the cortical surface to infer biomarkers of Huntington's disease.. In MICCAI, volume 13, pages 217-224, 2010. [bibtex-entry]


  13. L. Marrakchi-Kacem, C. Poupon, C. Delmaire, A. Durr, J.-F. Mangin, S. Lehericy, and F. Poupon. Pathology-adapted Automatic Deep Nuclei Segmentation : Evaluation of accuracy on Huntington Patients. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  14. L. Marrakchi-Kacem, C. Poupon, E. Jouvent, I. Rekik, J.-F. Mangin, and F. Poupon. Robust Automatic Segmentation of Ventricles : Application to a Genetic Small Vessel Disease, CADASIL. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  15. L. Marrakchi-Kacem, C. Poupon, J.-F. Mangin, and F. Poupon. Multi-contrast deep nuclei segmentation using a probabilistic atlas. In Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on, pages 61-64, 2010. IEEE. [bibtex-entry]


  16. L. Marrakchi-Kacem, F. Poupon, P. Roca, A. Tucholka, C. Delmaire, E. Bardinet, M. Sharman, R. Valabregue, A. Messé, C. Malherbe, and others. Probabilistic atlas of the connections between the basal ganglia and the cortex. In Proceedings of the ISMRM 18th Annual Scientific Meeting and Exhibition, 2010. [bibtex-entry]


  17. L. Marrakchi-Kacem, F. Poupon, A. Tucholka, P. Roca, C. Delmaire, J. Yelnik, E. Bardinet, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Striato-Cortical Probabilistic Connectivity Atlases to infer Biomarkers of Huntington's Disease. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  18. F. Poupon. Analyse en temps réel des données d'IRM. In 58th JFR, Paris, France, 2010. [bibtex-entry]


  19. C. Poupon, J. Dubois, L. Marrakchi, V. Brion, J.-F. Mangin, and F. Poupon. Real-time EPI T1, T2 and T2* mapping at 3T. In Proceedings of the International Society Magnetic Resonance in Medicine, volume 18, pages 4983, 2010. [bibtex-entry]


  20. I. Rekik, L. Marrakchi-Kacem, J.-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. Automatic Detection of the Anterior and Posterior Commissures from T1-weighted Images. In 18th ISMRM, Stockholm, Sweden, 2010. [bibtex-entry]


  21. F. poupon, I. Rekik, L. Marrakchi-Kacem, D. Le Bihan, J.-F. Mangin, and C. Poupon. Automatic Detection of the Anterior and Posterior Commissures from T1-weighted Images. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  22. M. Descoteaux, J. Calder, C. Poupon, F. Poupon, and R. Deriche. Optimal Real-Time Q-Ball Imaging with Incremental Recursive Orientation Sets. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  23. I. Kezele, C. Poupon, M. Descoteaux, F. Poupon, and J.-F. Mangin. Importance of Multiscale Analysis in HARDI Studies. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  24. S. Lehéricy, E. Bardinet, J. Yelnik, F. Poupon, K. Ugurbil, P.-F. Van de Moortele, and C. Poupon. Gradient Echo Versus Spin Echo T2-Weighted Imaging of Deep Brain Structures of the Human Brain at 7 Tesla. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  25. F. Poupon, D. Hasboun, L. Marrakchi, E. Bardinet, J.-F. Mangin, I. Kezele, S. Fernandez-Vidal, K. Ugurbil, S. Lehericy, C. Poupon, P.-F. Van de Moortele, and J. Yelnik. Atlas-Based Analysis of Human Brainstem Anatomy as Revealed by Gradient-Echo T2 Weighted MR Imaging at 7T. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  26. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Computing strings of average HARDI models using Procrustes-Based Fibre Alignment. In Proc. 16th ISMRM, Toronto, Canada, 2008. [bibtex-entry]


  27. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Mean Q-ball strings obtained by constrained Procrustes analysis with point sliding. In 11th Proc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. [bibtex-entry]


  28. F. Poupon, A. Roche, J.-F. Mangin, and C. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In ISMRM, Toronto, Toronto, Canada, 2008. [bibtex-entry]


  29. C. Poupon, C. Wiggins, M. Chaumeil, V. Gudmundsdottir, and F. Poupon. Robust and mask free phase unwrapping technique dedicated to B0 and T2* phase imaging. In 16th ISMRM, Toronto, Canada, 2008. [bibtex-entry]


  30. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa. [bibtex-entry]


  31. C. Poupon, F. Poupon, A. Roche, Y. Cointepas, J. Dubois, and J.-F. Mangin. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 27-35, 2007. [bibtex-entry]


  32. C. Poupon, B. Rieul, M. Perrin, F. Poupon, and J.-F. Mangin. Diffusion phantoms dedicated to the study and validation of HARDI models. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. [bibtex-entry]


  33. Z. Y. Sun, D. Rivière, F. Poupon, J. Régis, and J.-F. Mangin. Automatic inference of sulcus patterns using 3D moment invariants. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 515-22, 2007. Keyword(s): brainvisa. [bibtex-entry]


  34. C. Poupon, F. Poupon, L. Allirol, and J.-F. Mangin. A database dedicated to anatomo-functional study of human brain connectivity. In 12th HBM Neuroimage, number 646, Florence, Italie, 2006. Keyword(s): brainvisa. [bibtex-entry]


  35. J.-F. Mangin, F. Poupon, D. Rivière, D. L. Collins, A. C. Evans, and J. Régis. 3D Moment Invariant Based Morphometry. In MICCAI, Montreal, LNCS 2879, Springer-Verlag, pages 505-512, 2003. Keyword(s): Sulci, LongConfPaper. [bibtex-entry]


  36. D. Rivière, D. Papadopoulos-Orfanos, C. Poupon, F. Poupon, O. Coulon, J.-B. Poline, V. Frouin, J. Régis, and J.-F. Mangin. A structural browser for human brain mapping. In Proc. 6th HBM, NeuroImage 11(5), San Antonio, Texas, pages 912, 2000. Keyword(s): Computer Science. [bibtex-entry]


  37. F. Poupon, J.-F. Mangin, V. Frouin, and I. Magnin. Modèles déformables 3D fondés sur les invariants de moments. In Université Blaise Pascal Laboratoires des Sciences et Matériaux pour l'Electronique et l'Automatique, LASMEA-UMR 6602 du CNRS, editor, Actes du 11RFIA, volume II, Clermont-Ferrand, France, pages 377-386, Jan. 1998. AFCET, AFIA. Keyword(s): Segmentation. [bibtex-entry]


  38. C. Poupon, J.-F. Mangin, V. Frouin, J. Régis, F. Poupon, M. Pachot-Clouard, D. Le Bihan, and I. Bloch. Regularization of MR Diffusion Tensor Maps for Tracking Brain White Matter Bundles. In Proc. 1st MICCAI, LNCS-1496, MIT, Boston, pages 489-498, Oct. 1998. Springer Verlag. Keyword(s): Diffusion. [bibtex-entry]


  39. F. Poupon, J.-F. Mangin, D. Hasboun, I. Magnin, and V. Frouin. Multi-object Deformable Templates Dedicated to the Segmentation of Brain Deep Structures. In Proc. 1st MICCAI, LNCS-1496, MIT, Boston, pages 1134-1143, Oct. 1998. Springer Verlag. Keyword(s): Segmentation, LongConfPaper. [bibtex-entry]


  40. C. Poupon, J.-F. Mangin, M. Pachot-Clouard, F. Poupon, J. Régis, V. Frouin, I. Bloch, and D. Le Bihan. Tracking fiber bundles in diffusion tensor images. In Proc. 4th HBM, volume 7(4) of Neuroimage, Montréal, Canada, pages S701, May 1998. Academic Press. [bibtex-entry]


  41. F. Poupon, J.-F. Mangin, V. Frouin, and I. Magnin. 3D Multi-object Deformable Templates Based on Moment Invariants. In M. Frydrych, J. Parkkinen, and A. Visa, editors, 10th Scandinavian Conference on Image Analysis, volume I, Lappeenranta, Finland, pages 149-156, June 1997. Pattern Recognition Society of Finland. Keyword(s): Segmentation, LongConfPaper. [bibtex-entry]



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