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Publications of A. Roche

Thesis

  1. A. Roche. Recalage d'images médicales par inférence statistique. PhD thesis, Université de Nice-Sophia Antipolis, France, Feb. 2001. Keyword(s): Registration. [bibtex-entry]


Articles in journal or book chapters

  1. C. Poupon, F. Poupon, A. Roche, and J.-F. Mangin. Real-time magnetic resonance diffusion imaging. 2012. [bibtex-entry]


  2. M. Keller, A. Roche, A. Tucholka, and B.Thirion. Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling. Statistica Sinica, 18(4):1357-1374, 2008. [bibtex-entry]


  3. C. Poupon, A. Roche, J. Dubois, J.-F. Mangin, and F. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. Medical Image Analysis, 12(5):527-34, 2008. [bibtex-entry]


  4. E. Duchesnay, A. Cachia, A. Roche, D. Rivière, Y. Cointepas, D. Papadopoulos-Orfanos, M. Zilbovicius, J.-L. Martinot, and J.-F. Mangin. Classification from cortical folding patterns. IEEE Trans. Med. Imag., 26(4):553-565, 2007. Keyword(s): Classification, Sulci, Anatomy, brainvisa. [bibtex-entry]


  5. A. Roche. A Four-Dimensional Registration Algorithm With Application to Joint Correction of Motion and Slice Timing in fMRI. IEEE Trans. Med. Imag., 30(8):1546-1554, 2007. [bibtex-entry]


  6. A. Roche, S. Mériaux, M. Keller, and B. Thirion. Mixed-effects statistics for group analysis in fMRI: A nonparametric maximum likelihood approach. Neuroimage, 38:501-510, 2007. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  7. B. Thirion, P. Pinel, S. Mériaux, A. Roche, S. Dehaene, and J.-B. Poline. Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.. Neuroimage, 35(1):105-120, March 2007. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Cohort Studies, Databases, Factual, Humans, Image Processing, Computer-Assisted, methods/statistics /&/ numerical data, Magnetic Resonance Imaging, methods/statistics /&/ numerical data, Models, Neurological, Models, Statistical, Reproducibility of Results, Sample Size. [bibtex-entry]


  8. B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, and J.-B. Poline. Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies. IEEE Trans. Med. Imag., 26(9):1256-1269, Sep. 2007. [bibtex-entry]


  9. X. Pennec, N. Ayache, A. Roche, and P. Cachier. Non-rigid MR/US registration for tracking brain deformations. In R. S. Blum and Z. Liu, editors, Multi-Sensor Image Fusion and Its Applications. CRC Press, Boca Raton, FL, First edition, 2006. [bibtex-entry]


  10. G. Dehaene-Lambertz, L. Hertz-Pannier, J. Dubois, S. Mériaux, A. Roche, and M. Sigman. Functional organization of perisylvian activation during presentation of sentences in preverbal infants. Proc. Natl. Acad. Sci. USA, 103:14240-14245, 2006. [bibtex-entry]


  11. S. Mériaux, A. Roche, G. Dehaene-Lambertz, B. Thirion, and J.-B. Poline. Combined permutation test and mixed-effect model for group average analysis in fMRI.. Hum. Brain Mapp., 27(5):402-410, May 2006. Keyword(s): group analysis, fMRI, nonparametric statistics, mixed effects. [bibtex-entry]


  12. B. Thirion, G. Flandin, P. Pinel, A. Roche, P. Ciuciu, and J.-B. Poline. Dealing with the shortcomings of spatial normalization: Multi-subject parcellation of fMRI datasets. Hum. Brain Mapp., 27(8):678-693, Aug. 2006. Keyword(s): fMRI. [bibtex-entry]


  13. J.-B. Poline, P. Ciuciu, A. Roche, and B. Thirion. Quelle confiance accorder aux images du cerveau en action?. Pour la Science, 338:138-142, Dec. 2005. [bibtex-entry]


  14. S. K. Warfield, A. Guimond, A. Roche, A. Bharatha, A. Tei, F. Talos, J. Rexilius, J. Ruiz-Alzola, C.-F. Westin, S. Haker, S. Angenent, A. Tannenbaum, F. Jolesz, and R. Kikinis. Advanced Nonrigid Registration Algorithms for Image Fusion. In A.W. Toga, editor, Brain Mapping: The Methods. Academic Press, San Diego, Second edition, 2002. [bibtex-entry]


  15. L. Freire, A. Roche, and J.-F. Mangin. What is the best similarity measure for motion correction in fMRI time series?. IEEE Trans. Med. Imag., 21(5):470-484, May 2002. Keyword(s): Registration. [bibtex-entry]


  16. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Trans. Med. Imag., 20(1):58-69, 2001. [bibtex-entry]


  17. A. Roche, X. Pennec, G. Malandain, and N. Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Trans. Med. Imag., 20(10):1038-1049, 2001. Keyword(s): Registration. [bibtex-entry]


  18. S. Ourselin, A. Roche, G. Subsol, X. Pennec, and N. Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, Dec. 2000. [bibtex-entry]


  19. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology: Special issue on 3D imaging, 11:71-80, 2000. Keyword(s): Registration. [bibtex-entry]


Conference articles

  1. P. Ciuciu, S. Desmidt, T. Vincent, S. Roger, B. Thirion, and A. Roche. What is the statistical difference between SPM5 and the BrainVISA fMRI toolbox?. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  2. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  3. M. Keller, M. Lavielle, M. Perrot, and A. Roche. Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis. In 12th MICCAI, London, U.K., Sep. 2009. [bibtex-entry]


  4. M. Bhattacharjee, A. Pitiot, A. Roche, D. Dormont, and E. Bardinet. Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs using Confidence-Based Block-Matching. In MICCAI (MICCAI'08), LNCS, New York, USA, Sep. 2008. Springer Verlag. [bibtex-entry]


  5. P. Ciuciu, T. Vincent, A.-L. Fouque, and A. Roche. Improved fMRI group studies based on spatially varying non-parametric BOLD signal modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 1263-1266, May 2008. [bibtex-entry]


  6. M. Keller and A. Roche. Increased sensitivity in fMRI group analysis using mixed-effect modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 548-551, May 2008. [bibtex-entry]


  7. F. Poupon, A. Roche, J.-F. Mangin, and C. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In ISMRM, Toronto, Toronto, Canada, 2008. [bibtex-entry]


  8. P. Ciuciu, P. Abry, C. Rabrait, H. Wendt, and A. Roche. Leader-based multifractal analysis for EVI fMRI time series: ongoing vs. task-related brain activity. In 4th Proc. IEEE ISBI, Arlington, VA, pages 404-407, Apr. 2007. [bibtex-entry]


  9. M. Keller, S. Mériaux, A. Roche, P. Pinel, and B. Thirion. A Mixed-Effect Statistic for Two-Sample Group Analysis in fMRI. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): permutation test, mixed-effect. [bibtex-entry]


  10. C. Poupon, F. Poupon, A. Roche, Y. Cointepas, J. Dubois, and J.-F. Mangin. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 27-35, 2007. [bibtex-entry]


  11. B. Thirion, A. Tucholka, M. Keller, P. Pinel, A. Roche, J.-F. Mangin, and J.-B. Poline. High level group analysis of FMRI data based on Dirichlet process mixture models. In IPMI, volume 4584 of LNCS, pages 482-494, 2007. Keyword(s): Algorithms, Brain, Brain Mapping, Computer Simulation, Evoked Potentials, Humans, Image Interpretation, Computer-Assisted, Magnetic Resonance Imaging, Models, Neurological. [bibtex-entry]


  12. S. Mériaux, A. Roche, G. Dehaene-Lambertz, and J.-B. Poline. When do mixed-effect models fail to improve detection sensitivity in fMRI group activation maps?. In Neuroimage (HBM'06), Florence, Italy, 2006. [bibtex-entry]


  13. S. Mériaux, A. Roche, B. Thirion, and G. Dehaene-Lambertz. Robust statistics for nonparametric group analysis in fMRI. In Proc. 3th Proc. IEEE ISBI, Arlington, VA, pages 936-939, Apr. 2006. Keyword(s): robust statistics, group analysis, nonparametric tests, permutation tests, bootstrap. [bibtex-entry]


  14. B. Thirion, A. Roche, P. Ciuciu, and J.-B. Poline. Improving sensitivity and reliability of fMRI group studies through high level combination of individual subjects results. In Proc. MMBIA2006, New York, USA, June17-18 2006. [bibtex-entry]


  15. S. Mériaux, A. Roche, J. Catry, O. Chauvin, and J.-B. Poline. Robust statistics for fMRI group analyses. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, June 12-16 2005. [bibtex-entry]


  16. A. Roche. When is it a good time to smooth fMRI data?. In Proc. 11th HBMCD-RomNeuroimage vol 26 (1), Toronto, Canada, June 2005. [bibtex-entry]


  17. P. Ciuciu, J. Idier, A. Roche, and Ch. Pallier. Outlier detection for robust region-based estimation of the Hemodynamic Response Function in event-related fMRI. In 2th Proc. IEEE ISBI, Arlington, VA, pages 392-395, Apr. 2004. [bibtex-entry]


  18. E. Duchesnay, A. Roche, D. Rivière, D. Papadopoulos-Orfanos, Y. Cointepas, and J.-F. Mangin. Guessing the Sex from the Shapes of Cortical Folds. In HBM, Budapest, pages 164, 2004. [bibtex-entry]


  19. E. Duchesnay, A. Roche, D. Rivière, D. Papadopoulos-Orfanos, Y. Cointepas, and J.-F. Mangin. Population Classification Based on Structural Morphometry of Cortical Sulci. In Proc. 2th Proc. IEEE ISBI, Arlington, VA, USA, pages 1276-1279, Apr. 2004. [bibtex-entry]


  20. G. Flandin, X. Pennec, A. Roche, W. Penny, N. Ayache, and J.-B. Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  21. S. Mériaux, F. Kherif, A. Roche, M. Brett, L. Garnero, and J.-B. Poline. How frequently do we sample inhomogeneous group of subjects in fMRI studies?. In Proc. 10th HBM CD-Rom Neuroimage vol 22 (1), Budapest, Hungary, June 13-17 2004. [bibtex-entry]


  22. A. Roche, P.-J. Lahaye, and J.-B. Poline. Incremental Activation Detection in fMRI Series using Kalman Filtering. In Proc. 2st Proc. IEEE ISBI, Arlington, VA, pages 376-379, Apr. 2004. Keyword(s): fMRI, brainvisa. [bibtex-entry]


  23. A. Roche, P. Pinel, S. Dehaene, and J.-B. Poline. Solving Incrementally the Fitting and Detection Problems in fMRI Time Series. In Proc. 7th MICCAI, volume 3217 of Lecture Notes in Computer Science, Saint-Malo, France, pages 719-726, Sep. 2004. Springer Verlag. Keyword(s): fMRI. [bibtex-entry]


  24. A. Roche and J.-B. Poline. Kalman Filtering for Real-Time fMRI Analysis. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  25. A. Roche, F. Kherif, G. Flandin, and J.-B. Poline. Should fMRI data be analyzed using a single BOLD response model across regions?. In NeuroImage (HBM'03), New York,, June19--22 2003. [bibtex-entry]


  26. E. Bardinet, P. Cathier, A. Roche, N. Ayache, and D. Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In T. Dohi and R. Kikinis, editors, Proc. 5th MICCAI, volume 2488 of Lecture Notes in Computer Science, Tokyo, Japan, pages 323-330, Sep. 2002. Springer Verlag. [bibtex-entry]


  27. D. Dormont, E. Bardinet, A. Roche, P. Cachier, F. Bonneville, N. Ayache, P. Cornu, and C. Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, , France, Aug. 2002. [bibtex-entry]


  28. E. Bardinet, A.C.F. Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, Proc. 4th MICCAI, volume 2208 of Lecture Notes in Computer Science, Utrecht, The Netherlands, pages 957-965, Oct. 2001. Springer Verlag. [bibtex-entry]


  29. H. Delingette, E. Bardinet, D. Rey, J.-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis, satellite symposia of MICCAI'01, Utrecht, The Netherlands, Oct. 2001. [bibtex-entry]


  30. S. Granger, X. Pennec, and A. Roche. Rigid Point-Surface Registration using an EM Variant of ICP for Computed Guided Oral Implantology. In W.J. Niessen and M.A. Viergever, editors, Proc. 4th MICCAI, volume 2208 of Lecture Notes in Computer Science, Utrecht, The Netherlands, pages 752-761, Oct. 2001. Springer Verlag. [bibtex-entry]


  31. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, and N. Ayache. Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia. In W.J. Niessen and M.A. Viergever, editors, Proc. 4th MICCAI, volume 2208 of Lecture Notes in Computer Science, Utrecht, The Netherlands, pages 743-751, Oct. 2001. Springer Verlag. [bibtex-entry]


  32. X. Pennec, N. Ayache, A. Roche, and P. Cachier. Non-rigid MR/US registration for tracking brain deformations. In MIAR, volume 2208, Shatin, Hong Kong, pages 79-86, June 2001. IEEE Computer Society Press. [bibtex-entry]


  33. A. S. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 95-105, Oct. 11-14 2000. Springer Verlag. [bibtex-entry]


  34. S. Ourselin, A. Roche, S. Prima, and N. Ayache. Block Matching: a General Framework to Improve Robustness of Rigid Registration of Medical Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 557-566, Oct. 2000. Springer Verlag. [bibtex-entry]


  35. A. Roche, A. Guimond, N. Ayache, and J. Meunier. Multimodal Elastic Matching of Brain Images. In Computer Vision - ECCV 2000, volume 1843 of Lecture Notes in Computer Science, Dublin, Ireland, pages 511-527, June 2000. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  36. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In S. Delp, A.M. DiGioia, and B. Jaramaz, editors, Proc. 3th MICCAI, volume 1935 of Lecture Notes in Computer Science, Pittsburgh, pages 567-577, Oct. 11-14 2000. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  37. P. Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Ponvert, J. L. Habrand, and J. N. Bruneton. Automatic CT Scan and MRI Matching: Use for Brain Tumor Radiotherapy. In RSNA'99, Chicago, Nov. 1999. Published in Supplement to Radiology, 213:236. [bibtex-entry]


  38. P. Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Ponvert, J. L. Habrand, and J. N. Bruneton. Fusions Scanner/IRM entrièrement automatique: perspectives d'utilisation pour la radiothérapie. In Proc. du XIXe Forum de Cancérologie, Paris, France, June 1999. [bibtex-entry]


  39. S. Ourselin, A. Roche, G. Subsol, and X. Pennec. Automatic Alignment of Histological Sections. In F. Pernus, S. Kovacic, H.S. Stiehl, and M.A. Viergever, editors, WBIR, Bled, Slovenia, pages 1-13, Aug. 1999. [bibtex-entry]


  40. S. Ourselin, C. Sattonnet, A. Roche, and G. Subsol. Automatic alignment of histological sections for 3D reconstruction and analysis. In 6ème congrès annuel de l'Association Française de Cytométrie, Dijon, France, Oct. 1999. Published in the Analytical Cellular Pathology Journal, 19(3):123. [bibtex-entry]


  41. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In Proc. 2th MICCAI, volume 1679 of Lecture Notes in Computer Science, Cambridge, United Kingdom, pages 555-566, Sep. 1999. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


  42. A. Roche, G. Malandain, X. Pennec, and N. Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. 1st MICCAI, volume 1496 of Lecture Notes in Computer Science, Cambridge, MA, pages 1115-1124, Oct. 1998. Springer Verlag. Keyword(s): Registration. [bibtex-entry]


Internal reports

  1. A. Roche. EM algorithm and variants: an informal tutorial. Technical report, CEA, 2003. Keyword(s): EM algorithm. [bibtex-entry]


  2. S. Granger, X. Pennec, and A. Roche. Rigid Point-Surface Registration using Oriented Points and an EM Variant of ICP for Computer Guided Oral Implantology. Technical report 4169, INRIA, Apr. 2001. [bibtex-entry]


  3. A. Roche, X. Pennec, G. Malandain, N. Ayache, and S. Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Technical report 3980, INRIA, July 2000. Keyword(s): Registration. [bibtex-entry]


  4. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. Technical report 3796, INRIA, Nov. 1999. [bibtex-entry]


  5. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. Technical report 3741, INRIA, July 1999. Keyword(s): Registration. [bibtex-entry]


  6. S. Ourselin, A. Roche, G. Subsol, and X. Pennec. Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. Technical report 3595, INRIA, Dec. 1998. [bibtex-entry]


  7. A. Roche, G. Malandain, N. Ayache, and X. Pennec. Multimodal Image Registration by Maximization of the Correlation Ratio. Technical report 3378, INRIA, Aug. 1998. Keyword(s): Registration. [bibtex-entry]



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