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Publications of Bertrand Thirion

Articles in journal or book chapters

  1. V. Siless, J. Glaunes, P. Guevara, J.-F. Mangin, C. Poupon, D. Le Bihan, B. Thirion, and P. Fillard. Joint T1 and brain fiber log-demons registration using currents to model geometry. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, pp 57-65, 2012. [bibtex-entry]


  2. P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, M. Descoteaux, B. Thirion, and J.-F. Mangin. Robust clustering of massive tractography datasets.. Neuroimage, 54(3):1975-1993, 2011. [bibtex-entry]


  3. F. Leroy, H. Glasel, J. Dubois, L. Hertz-Pannier, B. Thirion, J.-F. Mangin, and G. Dehaene-Lambertz. Early maturation of the linguistic dorsal pathway in human infants. J Neurosci, 31(4):1500-6, 2011. [bibtex-entry]


  4. G. Varoquaux, S. Sadaghiani, P. Pinel, A. Kleinschmidt, J.-B. Poline, and B. Thirion. A group model for stable multi-subject ICA on fMRI datasets. Neuroimage, 51(1):288-299, 2010. [bibtex-entry]


  5. A. Knops, B. Thirion, E. M. Hubbard, V. Michel, and S. Dehaene. Recruitment of an area involved in eye movements during mental arithmetic. Science, 324:1583-5, 2009. [bibtex-entry]


  6. S. Makni, J. Idier, T. Vincent, B. Thirion, G. Dehaene-Lambertz, and P. Ciuciu. A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI. Neuroimage, 41(3):941-969, July 2008. Keyword(s): fMRI. [bibtex-entry]


  7. M. Perrin, Y. Cointepas, A. Cachia, C. Poupon, B. Thirion, D. Rivière, P. Cathier, V. El Kouby, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging. Int J Biomed Imaging, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  8. P. Pinel, B. Thirion, S. Mériaux, A. Jobert, J. Serres, D. Le Bihan, J.-B. Poline, and S. Dehaene. Fast reproducible identification and large-scale databasing of individual functional cognitive networks. BMC Neurosci., 8(1):91, Oct. 2007. [bibtex-entry]


  9. A. Roche, S. Mériaux, M. Keller, and B. Thirion. Mixed-effects statistics for group analysis in fMRI: A nonparametric maximum likelihood approach. Neuroimage, 38:501-510, 2007. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  10. B. Thirion, P. Pinel, S. Mériaux, A. Roche, S. Dehaene, and J.-B. Poline. Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.. Neuroimage, 35(1):105-120, March 2007. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Cohort Studies, Databases, Factual, Humans, Image Processing, Computer-Assisted, methods/statistics /&/ numerical data, Magnetic Resonance Imaging, methods/statistics /&/ numerical data, Models, Neurological, Models, Statistical, Reproducibility of Results, Sample Size. [bibtex-entry]


  11. B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, and J.-B. Poline. Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies. IEEE Trans. Med. Imag., 26(9):1256-1269, Sep. 2007. [bibtex-entry]


  12. S. Mériaux, A. Roche, G. Dehaene-Lambertz, B. Thirion, and J.-B. Poline. Combined permutation test and mixed-effect model for group average analysis in fMRI.. Hum. Brain Mapp., 27(5):402-410, May 2006. Keyword(s): group analysis, fMRI, nonparametric statistics, mixed effects. [bibtex-entry]


  13. B. Thirion, S. Dodel, and J.-B. Poline. Detection of signal synchronizations in resting-state fMRI datasets.. Neuroimage, 29(1):321-327, Jan. 2006. [bibtex-entry]


  14. B. Thirion, E. Duchesnay, E. M. Hubbard, J. Dubois, J.-B. Poline, D. Le Bihan, and S. Dehaene. Inverse retinotopy: inferring the visual content of images from brain activation patterns.. Neuroimage, 33(4):1104-1116, Dec. 2006. Keyword(s): Humans, Imagination, Magnetic Resonance Imaging, Models, Theoretical, Retina, Visual Cortex, Visual Perception. [Abstract] [bibtex-entry]


  15. B. Thirion, G. Flandin, P. Pinel, A. Roche, P. Ciuciu, and J.-B. Poline. Dealing with the shortcomings of spatial normalization: Multi-subject parcellation of fMRI datasets. Hum. Brain Mapp., 27(8):678-693, Aug. 2006. Keyword(s): fMRI. [bibtex-entry]


  16. J.-B. Poline, P. Ciuciu, A. Roche, and B. Thirion. Quelle confiance accorder aux images du cerveau en action?. Pour la Science, 338:138-142, Dec. 2005. [bibtex-entry]


  17. B. Thirion, S. Dodel, and J.-B. Poline. Detection of signal synchronizations in resting-state fMRI datasets. Neuroimage, 2005. [bibtex-entry]


  18. B. Thirion and O. Faugeras. Feature characterization in fMRI data: the Information Bottleneck approach.. Medical Image Analysis, 8(4):403-419, Dec. 2004. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Computer Simulation, Image Processing, Computer-Assisted, Magnetic Resonance Imaging. [bibtex-entry]


  19. B. Thirion and O. Faugeras. Dynamical components analysis of fMRI data through kernel PCA.. Neuroimage, 20(1):34-49, Sep. 2003. Keyword(s): Algorithms, Analysis of Variance, Automatic Data Processing, Computer Simulation, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Principal Component Analysis, Reproducibility of Results. [bibtex-entry]


Conference articles

  1. J. Lebenberg, C. Poupon, B. Thirion, F. Leroy, J.-F. Mangin, G. Dehaene-Lambertz, and J. Dubois. Clustering the infant brain tissues based on microstructural properties and maturation assessment using multi-parametric MRI. In Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on, pages 148-151, 2015. IEEE. [bibtex-entry]


  2. G. Varoquaux, A. Gramfort, F. Pedregosa, V. Michel, and B. Thirion. Multi-subject dictionary learning to segment an atlas of brain spontaneous activity. In Proc. 22th IPMI, LNCS-, Monastery IrseeGermany, pages -, July 2011. Springer Verlag. [bibtex-entry]


  3. P. Ciuciu, S. Desmidt, T. Vincent, S. Roger, B. Thirion, and A. Roche. What is the statistical difference between SPM5 and the BrainVISA fMRI toolbox?. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  4. P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, L. Marrakchi, M. Descoteaux, P. Fillard, B. Thirion, and J.-F. Mangin. Inference of a HARDI fiber bundle atlas using a two-level clustering strategy.. In MICCAI, volume 13, pages 550-557, 2010. [bibtex-entry]


  5. G. Varoquaux, M. Keller, J.-B. Poline, P. Ciuciu, and B. Thirion. ICA-based sparse features recovery from fMRI datasets. In 7th Proc. IEEE ISBI, Rotterdam, The Netherlands, pages 1177-1180, Apr. 2010. [bibtex-entry]


  6. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  7. P. Guevara, Y. Cointepas, D. Rivière, C. Poupon, B. Thirion, and J.-F. Mangin. Inference of a fiber bundle atlas using a two-level clustering strategy. In MICCAI 2009 Workshop on Diffusion Modelling, 2009. [bibtex-entry]


  8. C. Damon, P. Pinel, M. Perrot, V. Michel, E. Duchesnay, J.-B. Poline, and B. Thirion. Discriminating Between Populations of Subjects Based on FMRI Data Using Sparse Features Selection and SRDA Classifier. In MICCAI 2008 Workshop on Analysis of Functional Medical Images, New York, Sept 2008. [bibtex-entry]


  9. V. Michel, C. Damon, and B. Thirion. Mutual information-based feature selection enhances fMRI brain activity classification. In 5th Proc. IEEE ISBI, Paris, France, pages 592-595, May 2008. [bibtex-entry]


  10. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa. [bibtex-entry]


  11. A. Tucholka, B. Thirion, M. Perrot, P. Pinel, J.-F. Mangin, and J.-B. Poline. Probabilistic anatomo-functional parcellation of the cortex: how many regions?. In 11thProc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. Keyword(s): brainvisa. [bibtex-entry]


  12. A. Tucholka, B. Thirion, P. Pinel, J.-B. Poline, and J.-F. Mangin. Triangulating cortical functional networks with anatomical landmarks. In 5th Proc. IEEE ISBI, Paris, France, pages 612-615, May 2008. Keyword(s): brainvisa. [bibtex-entry]


  13. T. Vincent, P. Ciuciu, and B. Thirion. Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in fMRI. In 5th Proc. IEEE ISBI, Paris, France, pages 568-571, May 2008. [bibtex-entry]


  14. Alexandre Gramfort, Benoit Cottereau, Maureen Clerc, Bertrand Thirion, and Sylvain Baillet. Challenging the estimation of cortical activity from MEG with simulatedfMRI-constrained retinotopic maps. In Proc. of the 29th IEEE EMBS Annual international conference, volume 1, pages 4945-4948, 2007. [bibtex-entry]


  15. M. Keller, S. Mériaux, A. Roche, P. Pinel, and B. Thirion. A Mixed-Effect Statistic for Two-Sample Group Analysis in fMRI. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): permutation test, mixed-effect. [bibtex-entry]


  16. B. Thirion, A. Tucholka, M. Keller, P. Pinel, A. Roche, J.-F. Mangin, and J.-B. Poline. High level group analysis of FMRI data based on Dirichlet process mixture models. In IPMI, volume 4584 of LNCS, pages 482-494, 2007. Keyword(s): Algorithms, Brain, Brain Mapping, Computer Simulation, Evoked Potentials, Humans, Image Interpretation, Computer-Assisted, Magnetic Resonance Imaging, Models, Neurological. [bibtex-entry]


  17. S. Mériaux, A. Roche, B. Thirion, and G. Dehaene-Lambertz. Robust statistics for nonparametric group analysis in fMRI. In Proc. 3th Proc. IEEE ISBI, Arlington, VA, pages 936-939, Apr. 2006. Keyword(s): robust statistics, group analysis, nonparametric tests, permutation tests, bootstrap. [bibtex-entry]


  18. B. Thirion, E. Duchesnay, E. M. Hubbard, J. Dubois, J.-B. Poline, and S. Dehaene. Reading the brain visual system as an inverse problem. In Proc. 3th Proc. IEEE ISBI, Washington, USA, Apr.6-9 2006. [bibtex-entry]


  19. B. Thirion, P. Pinel, and J.-B. Poline. Making reliable Random Effects Analyses : How many subjects ?. In Proc. 12th HBMCD-Rom, Florence, Italy, June11-15 2006. [bibtex-entry]


  20. B. Thirion, A. Roche, P. Ciuciu, and J.-B. Poline. Improving sensitivity and reliability of fMRI group studies through high level combination of individual subjects results. In Proc. MMBIA2006, New York, USA, June17-18 2006. [bibtex-entry]


  21. B. Thyreau, B. Thirion, G. Flandin, and J.-B. Poline. Anatomo-functional description of the brain: a probabilistic approach. In Proc. 31th Proc. IEEE ICASSP, volume V, Toulouse, France, pages 1109-1112, May 2006. Keyword(s): fMRI, functional brain imaging, Bayesian approach, parcellation, Gaussian mixture, Variational Bayes. [bibtex-entry]


  22. P. Ciuciu, Ch. Pallier, B. Thirion, S. Mériaux, G. Dehaene-Lambertz, and S. Dehaene. Hemodynamic response estimation in auditory sentence repetition. In Proc. 11th HBM, Toronto, Canada, June 2005. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment, Gibbs sampling, MCMC. [bibtex-entry]


  23. B. Thirion, E. Duchesnay, J. Dubois, J.-B. Poline, and D. Le Bihan. Reading in the subject's mind: the case of low-level vision. In Proc. 11th HBMCD-RomNeuroimage vol 26 (1), Toronto, Canada, June12-16 2005. [bibtex-entry]


  24. B. Thirion, G. Flandin, P. Pinel, and J.-B. Poline. Spatial relaxation increases the sensitivity of random effects analyses: the benefit of inter-subject parcellation. In Proc. 11th HBMCD-RomNeuroimage vol 26 (1), Toronto, Canada, June12-16 2005. [bibtex-entry]


  25. B. Thirion, P. Pinel, and J.-B. Poline. Defining robust Brain Functional Landmarks (BFLs) across subjects.. In Proc. 11th HBMCD-RomNeuroimage vol 26 (1), Toronto, Canada, June12-16 2005. [bibtex-entry]


  26. B. Thirion, P. Pinel, and J.-B. Poline. Finding Landmarks in the Functional Brain: Detection and Use for Group Characterization. In Proc. MICCAI2005, Palm Spings, USA, Oct.26-29 2005. [bibtex-entry]


  27. B. Thirion, P. Pinel, and J.-B. Poline. Finding landmarks in the functional brain: detection and use for group characterization.. In MICCAI'05, volume 8, pages 476-483, 2005. [bibtex-entry]


  28. B. Thirion and O. Faugeras. Nonlinear dimension reduction of fMRI data: the Laplacian embedding approach. In Proc. 2st Proc. IEEE ISBI, Arlington, VA, pages 372-375, Apr. 2004. [bibtex-entry]


  29. B. Thirion and O. Faugeras. Dynamical Components Analysis of fMRI Data: A Second Order Solution. In EUROCAST, pages 552-563, 2003. [bibtex-entry]


  30. B. Thirion and O. Faugeras. Feature Detection in fMRI Data: The Information Bottleneck Approach. In Proc. 6th MICCAI, Montreal Canada, pages 83-91, Nov. 2003. [bibtex-entry]


  31. B. Thirion, F. Kherif, J.-B. Poline, and O. Faugeras. Multivariate analysis of fMRI data: it is worth using nonlinear methods ?. In Proc. 9th HBMCD-RomNeuroimagevol 19 (2), New York,, June19--22 2003. [bibtex-entry]


  32. B. Thirion and O. Faugeras. Dynamical components analysis of fMRI data. In O. Faugeras, editor, Proc. IEEE International Symposium on Biomedical Imaging, pages 915-918, 2002. Keyword(s): biomedical MRI, independent component analysis, medical image processing, medical signal detection, spatiotemporal phenomena, time series, ICA-like criterion, autoregressive scheme, deterministic structure, dynamical components analysis, event-related design, experimental paradigm, fMRI data, global criterion, goodness of fit, localization, model priors, multivariate analysis method, real data, signal detection, spatial domain, spatiotemporal patterns, time series. [bibtex-entry]


  33. B. Thirion and O. Faugeras. Revisiting non-parametric activation detection on fMRI time series. In O. Faugeras, editor, Proc. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis MMBIA 2001, pages 121-128, 2001. Keyword(s): Markov processes, biomedical MRI, image sequences, medical image processing, statistical analysis, time series, visual perception, Leuven University, Student test, a priori modelling, expected signal, experimental block design, fMRI sequences, fMRI time series, first order Markov chain, functional magnetic resonance imaging, intensity values asymptotic distribution, medical diagnostic imaging, monkey motion perception, nonparametric activation detection, statistical validation, visual tasks series. [bibtex-entry]


  34. B. Thirion, B. Bascle, V. Ramesh, and N. Navab. Fusion of color, shading and boundary information for factory pipe segmentation. In B. Bascle, editor, Proc. IEEE Conference on Computer Vision and Pattern Recognition, volume 2, pages 349-356 vol.2, 2000. Keyword(s): computer vision, edge detection, image colour analysis, image segmentation, image texture, 3D reconstruction, application constraints, boundary information, color information, complex environments, contextual constraints, edge analysis, factory pipe segmentation, graph-cut formalism, highlights, image segmentation, industrial images, physics-based vision, probabilistic learning, shading information, textural variations, texture analysis, uncontrolled environments, user feedback, user input. [bibtex-entry]



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Last modified: Fri Mar 29 09:53:37 2019

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