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Publications about 'fMRI'

Thesis

  1. P. Ciuciu. Dynamique cérébrale en neuro-imagerie fonctionnelle. Habilitation thesis, Orsay, France, 2008. Keyword(s): fMRI, EM, MCMC, HRF, wavelets, multifractal, mixture models. [bibtex-entry]


  2. S. Mériaux. Diagnostic d'homogénéité et inférence non-paramétrique pour l'analyse de groupe en imagerie par résonance magnétique fonctionnelle. PhD thesis, Université de Paris-Sud, Orsay , France, Dec. 2007. Keyword(s): group analysis, fMRI, nonparametric statistics, mixed effects. [bibtex-entry]


  3. S. Donnet. Inversion de Données IRMf. Estimation et Sélection de Modèles. PhD thesis, Université de Paris--Sud, Orsay , France, Nov. 2006. Keyword(s): intra-subject analysis, fMRI, Stochastic Differential Equations. [bibtex-entry]


  4. S. Makni. Détection-estimation conjointe de l'activité cérébrale en IRMf. PhD thesis, Université de Paris--Sud, Orsay , France, Nov. 2006. Keyword(s): intra-subject analysis, fMRI, Bayesian inference, MCMC. [bibtex-entry]


Articles in journal or book chapters

  1. S. Badillo, T. Vincent, and P. Ciuciu. Group-level impacts of within- and between-subject hemodynamic variability in fMRI. Neuroimage, 82:433-448, 2013. [bibtex-entry]


  2. S. Badillo, T. Vincent, and P. Ciuciu. Group-level impacts of within- and between-subject hemodynamic variability in fMRI. Neuroimage, 82:433-448, 15 Nov. 2013. [bibtex-entry]


  3. L. Chaari, T. Vincent, F. Forbes, M. Dojat, and P. Ciuciu. Fast joint detection-estimation of evoked brain activity in event-related fMRI using a variational approach. IEEE Trans. Med. Imag., 32(5):821-837, May 2013. [bibtex-entry]


  4. A. Schwarz, B. Pinsard, V. Perlbarg, Y. Lu, L. Marais, D. Hill, and J.-F. Mangin. Task-free fMRI in clinical trials: Selection of covariates and numeric endpoints. Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 9(4):P588, 2013. [bibtex-entry]


  5. P Ciuciu, G Varoquaux, P Abry, S Sadaghiani, and A Kleinschmidt. Scale-Free and Multifractal Time Dynamics of fMRI Signals during Rest and Task.. Frontiers in physiology, 3(Article 186):1-18, June 2012. [bibtex-entry]


  6. L. Marais, V. Perlbarg, C. Poupon, U. Thoprakarn, B. Pinsard, J.-F. Mangin, X. Golay, G. Barker, J. Hajnal, D. Hill, and others. Cross-vendor implementation and test-retest analysis of ADNI2 functional MRI (fMRI) and diffusion tensor imaging (DTI) sequences for multicenter clinical trials in Alzheimer's disease. Alzheimer's & Dementia, 8(4):P339, 2012. [bibtex-entry]


  7. G. Operto, D. Rivière, B. Fertil, R. Bulot, J.-F. Mangin, and O. Coulon. Structural Analysis of fMRI data: a surface-based framework for multi-subject studies. Medical Image Analysis, 2012. Keyword(s): brainvisa, lnao. [bibtex-entry]


  8. L. Risser, T. Vincent, F. Forbes, J. Idier, and P. Ciuciu. Min-max extrapolation scheme for fast estimation of 3D Potts field partition functions. Application to the joint detection-estimation of brain activity in fMRI.. J. Sig. Proc. Syst., 65(3):325-338, Dec. 2011. [bibtex-entry]


  9. P. Ciuciu, T. Vincent, L. Risser, and Sophie Donnet. A joint detection-estimation framework for analysing within-subject fMRI data. Journal de la Société Francaise de Statistiques, 151(1):58-89, 2010. [bibtex-entry]


  10. G. Varoquaux, S. Sadaghiani, P. Pinel, A. Kleinschmidt, J.-B. Poline, and B. Thirion. A group model for stable multi-subject ICA on fMRI datasets. Neuroimage, 51(1):288-299, 2010. [bibtex-entry]


  11. T. Vincent, L. Risser, and P. Ciuciu. Spatially adaptive mixture modeling for analysis of within-subject fMRI time series. IEEE Trans. Med. Imag., 29(4):1059-1074, Apr. 2010. [bibtex-entry]


  12. T. Adali, Z.J. Wang, M.J. Mc Keown, P. Ciuciu, L.K. Hansen, A. Cichocki, and V.D. Calhoun. Introduction to the issue on fMRI analysis for human brain mapping. IEEE Journal of Selected Topics in Signal Processing, 2(6):813-816, Dec. 2008. [bibtex-entry]


  13. Anne Botzung, Ekaterina Denkova, P. Ciuciu, Christian Scheiber, and Lilianne Manning. The neural bases of the constructive nature of autobiographical memories studied with a self-paced fMRI design. Memory, 16(4):351-363, Apr. 2008. Keyword(s): autobiographical memories, fMRI, self-paced, Hemodynamic Response Function. [bibtex-entry]


  14. P. Ciuciu, P. Abry, C. Rabrait, and H. Wendt. Log wavelet Leaders cumulant based multifractal analysis of EVI fMRI time series: evidence of scaling in ongoing and evoked brain activity. IEEE Journal of Selected Topics in Signal Processing, 2(6):929-943, Dec. 2008. [bibtex-entry]


  15. M. Keller, A. Roche, A. Tucholka, and B.Thirion. Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling. Statistica Sinica, 18(4):1357-1374, 2008. [bibtex-entry]


  16. S. Makni, J. Idier, T. Vincent, B. Thirion, G. Dehaene-Lambertz, and P. Ciuciu. A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI. Neuroimage, 41(3):941-969, July 2008. Keyword(s): fMRI. [bibtex-entry]


  17. G. Flandin and W. Penny. Bayesian fMRI data analysis with sparse spatial basis function priors. Neuroimage, 34(3):1108-1125, Feb. 2007. [bibtex-entry]


  18. A. Roche. A Four-Dimensional Registration Algorithm With Application to Joint Correction of Motion and Slice Timing in fMRI. IEEE Trans. Med. Imag., 30(8):1546-1554, 2007. [bibtex-entry]


  19. A. Roche, S. Mériaux, M. Keller, and B. Thirion. Mixed-effects statistics for group analysis in fMRI: A nonparametric maximum likelihood approach. Neuroimage, 38:501-510, 2007. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  20. B. Thirion, P. Pinel, S. Mériaux, A. Roche, S. Dehaene, and J.-B. Poline. Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.. Neuroimage, 35(1):105-120, March 2007. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Cohort Studies, Databases, Factual, Humans, Image Processing, Computer-Assisted, methods/statistics /&/ numerical data, Magnetic Resonance Imaging, methods/statistics /&/ numerical data, Models, Neurological, Models, Statistical, Reproducibility of Results, Sample Size. [bibtex-entry]


  21. B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, and J.-B. Poline. Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies. IEEE Trans. Med. Imag., 26(9):1256-1269, Sep. 2007. [bibtex-entry]


  22. S. Donnet, M. Lavielle, and J.-B. Poline. Are fMRI event-related response constant in time? A model selection answer.. Neuroimage, pp 1169-1176, Apr. 2006. [bibtex-entry]


  23. Christophe Grova, Salima Makni, G. Flandin, P. Ciuciu, J. Gotman, and J.-B. Poline. Anatomically informed interpolation of fMRI data on the cortical surface. Neuroimage, 31:1475-1486, 2006. [bibtex-entry]


  24. S. Mériaux, A. Roche, G. Dehaene-Lambertz, B. Thirion, and J.-B. Poline. Combined permutation test and mixed-effect model for group average analysis in fMRI.. Hum. Brain Mapp., 27(5):402-410, May 2006. Keyword(s): group analysis, fMRI, nonparametric statistics, mixed effects. [bibtex-entry]


  25. J.-B. Poline, S.C. Strother, G. Dehaene-Lambertz, G.F. Egan, and J. L. Lancaster. Motivation and synthesis of the FIAC experiment: Reproducibility of fMRI results across expert analyses.. Hum. Brain Mapp., 27(5):351-359, May 2006. [bibtex-entry]


  26. B. Thirion, S. Dodel, and J.-B. Poline. Detection of signal synchronizations in resting-state fMRI datasets.. Neuroimage, 29(1):321-327, Jan. 2006. [bibtex-entry]


  27. B. Thirion, G. Flandin, P. Pinel, A. Roche, P. Ciuciu, and J.-B. Poline. Dealing with the shortcomings of spatial normalization: Multi-subject parcellation of fMRI datasets. Hum. Brain Mapp., 27(8):678-693, Aug. 2006. Keyword(s): fMRI. [bibtex-entry]


  28. V. Pouthas, N. George, J.-B. Poline, M. Pfeuty, P.-F. Van de Moortele, L. Hugueville, A.-M. Ferrandez, S. Lehéricy, D. Le Bihan, and B. Renault. Neural network involved in time perception: an fMRI study comparing long and short interval estimation.. Hum. Brain Mapp., 25(4):433-441, Aug. 2005. [bibtex-entry]


  29. B. Thirion, S. Dodel, and J.-B. Poline. Detection of signal synchronizations in resting-state fMRI datasets. Neuroimage, 2005. [bibtex-entry]


  30. G. Marrelec, P. Ciuciu, M. Pélégrini-Issac, and H. Benali. Estimation of the Hemodynamic Response Function in Event-Related Functional MRI: Bayesian networks as a framework for efficient Bayesian modeling and inference. IEEE Trans. Med. Imag., 23(8):959-967, Aug. 2004. Keyword(s): fMRI, HRF estimation, graph theory, Bayesian networks. [bibtex-entry]


  31. B. Thirion and O. Faugeras. Feature characterization in fMRI data: the Information Bottleneck approach.. Medical Image Analysis, 8(4):403-419, Dec. 2004. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Computer Simulation, Image Processing, Computer-Assisted, Magnetic Resonance Imaging. [bibtex-entry]


  32. P. Ciuciu, J.-B. Poline, G. Marrelec, J. Idier, Ch. Pallier, and H. Benali. Unsupervised robust non-parametric estimation of the hemodynamic response function for any fMRI experiment. IEEE Trans. Med. Imag., 22(10):1235-1251, Oct. 2003. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment, drift estimation, Maximum A Posteriori, multitask, multisession, Expectation Maximization, Expectation Conditional Maximization, UNAF, U494 / U678. [bibtex-entry]


  33. P.-J. Lahaye, J.-B. Poline, G. Flandin, S. Dodel, and L. Garnero. Functional connectivity: studying non-linear, delayed interactions between BOLD signal. Neuroimage, 20:962-974, 2003. Keyword(s): fMRI, functional connectivity, connectivity measures. [bibtex-entry]


  34. G. Marrelec, H. Benali, P. Ciuciu, M. Pélégrini-Issac, and J.-B. Poline. Robust Bayesian estimation of the hemodynamic response function in event-related BOLD MRI using basic physiological information. Hum. Brain Mapp., 19(1):1-17, May 2003. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment. [bibtex-entry]


  35. B. Thirion and O. Faugeras. Dynamical components analysis of fMRI data through kernel PCA.. Neuroimage, 20(1):34-49, Sep. 2003. Keyword(s): Algorithms, Analysis of Variance, Automatic Data Processing, Computer Simulation, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Principal Component Analysis, Reproducibility of Results. [bibtex-entry]


  36. L. Freire, A. Roche, and J.-F. Mangin. What is the best similarity measure for motion correction in fMRI time series?. IEEE Trans. Med. Imag., 21(5):470-484, May 2002. Keyword(s): Registration. [bibtex-entry]


  37. F. Kherif, J.-B. Poline, G. Flandin, H. Benali, O. Simon, S. Dehaene, and K. J. Worsley. Multivariate model specification for fMRI data.. Neuroimage, 16(4):1068-1083, August 2002. Keyword(s): Brain, physiology, Cognition, physiology, Humans, Linear Models, Magnetic Resonance Imaging, Mathematics, Mental Processes, physiology, Models, Neurological, Multivariate Analysis. [bibtex-entry]


  38. C.H. Liao, K. Worsley, J.-B. Poline, J. A. D. Aston, G. H. Duncan, and A. C. Evans. Estimating the delay of the response in fMRI data. Neuroimage, 16:593-606, 2002. [bibtex-entry]


  39. A. Andrade, F. Kherif, J.-F. Mangin, K. Worsley, A.-L. Paradis, O. Simon, S. Dehaene, and J.-B. Poline. Detection of fMRI activation using cortical surface mapping. Hum. Brain Mapp., 12:79-93, 2001. [bibtex-entry]


  40. I. Klein, A.-L. Paradis, J.-B. Poline, S. M. Kosslyn, and D. Le Bihan. Transient activity in the human calcarine cortex during visual-mental imagery: an event-related fMRI study. J. Cognitive Neurosci., 12(supplement 2):15-23, 2000. [bibtex-entry]


  41. A.-L. Paradis, V. Cornilleau-Pérès, J. Droulez, P.-F. Van de Moortele, E. Lobel, A. Berthoz, D. Le Bihan, and J.-B. Poline. Visual perception of motion and 3D structure from motion: an fMRI study. Cereb. Cortex, 10(8):772-783, Aug. 2000. [bibtex-entry]


  42. K. Worsley, J.-B. Poline, K.J. Friston, and A.C. Evans. Characterizing the response of PET and fMRI data using multivariate linear models. Neuroimage, 6(4):305-319, 1997. [bibtex-entry]


  43. K.J. Friston, J.-B. Poline, S. Strother, A. P. Holmes, C. D. Frith, and and R. Frackowiak. Detecting activations in PET and fMRI: levels of inference and power. Hum. Brain Mapp., 4:140-151, 1996. [bibtex-entry]


  44. K.J. Friston, A. P. Holmes, J.-B. Poline, P.J. Grasby, S.C.R. Williams, R. Frackowiak, and R. Turner. Analysis of fMRI time-series revisited. Neuroimage, 2:45-53, 1995. [bibtex-entry]


Conference articles

  1. S. Badillo, T. Vincent, and P. Ciuciu. Multi-session extension of the joint-detection framework in fMRI. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 1504-1507, Apr. 2013. [bibtex-entry]


  2. C. Bakhous, F. Forbes, T. Vincent, M. Dojat, and P. Ciuciu. Variational variable selection to assess experimental condition relevance in event-related fMRI. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 1500-1503, Apr. 2013. [bibtex-entry]


  3. T. Vincent, J. Warnking, M. Villien, A. Krainik, P. Ciuciu, and F. Forbes. Bayesian Joint Detection-Estimation of cerebral vasoreactivity from ASL fMRI data. In 16th Proc. Proc. MICCAI, LNCS Springer Verlag, volume 2, Nagoya, Japan, pages 616-623, Sep. 2013. [bibtex-entry]


  4. C. Bakhous, F. Forbes, T. Vincent, L. Chaari, M. Dojat, and P. Ciuciu. Adaptive experimental condition selection in event-related fMRI. In 9th Proc. IEEE ISBI, Barcelona, Spain, pages 1755-1758, May 2012. [bibtex-entry]


  5. L. Chaari, F. Forbes, T. Vincent, and P. Ciuciu. Adaptive hemodynamic-informed parcellation of fMRI data in a variational Joint Detection Estimation framework. In 15th Proc. MICCAI, LNCS 7512, (Part III), Nice, France, pages 180-188, Oct. 2012. Springer Verlag. [bibtex-entry]


  6. L. Chaari, F. Forbes, T. Vincent, and P. Ciuciu. Robust voxel-wise Joint Detection Estimation of Brain Activity in fMRI. In 19th Proc. IEEE ICIP, Orlando, USA, pages in press, Oct. 2012. [bibtex-entry]


  7. T. Vincent, L. Chaari, C. Bakhous, S. Badillo, and P. Ciuciu. Pyhrf: hemodynamics-centered fMRI data analyses. In Medical Analysis Workshop, 9th Proc. ISBI, Barcelona, Spain, 2012. [bibtex-entry]


  8. S. Badillo, T. Vincent, and P. Ciuciu. Impact of the joint detection-estimation approach on random effects group studies in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 376-380, Apr. 2011. [bibtex-entry]


  9. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in fMRI. In Journées de la Société Française de Statistiques, Tunis, Tunisie, May 2011. [bibtex-entry]


  10. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. Bayesian variational approximation for the joint Detection-Estimation of brain activity in fMRI. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. [bibtex-entry]


  11. L. Chaari, F. Forbes, T. Vincent, M. Dojat, and P. Ciuciu. Variational Solution to the Joint Detection Estimation of Brain Activity in fMRI. In 14th Proc. MICCAI, LNCS 6892 (Part II), Toronto, Canada, pages 260-268, Sep. 2011. Springer Verlag Berlin Heidelberg. [bibtex-entry]


  12. L. Chaari, S. Mériaux, S. Badillo, P. Ciuciu, and J.-C. Pesquet. 3D wavelet-based regularization for parallel MRI reconstruction: impact on subject and group-level statistical sensitivity in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 460-464, Apr. 2011. [bibtex-entry]


  13. S. Badillo, S. Desmidt, and P. Ciuciu. A group level fMRI comparative study between 12 and 32 channel coils at 3 Tesla. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  14. S. Badillo, T. Vincent, and P. Ciuciu. Spatially adaptive subject level analyses improve random effects fMRI group studies. In IEEE ISABEL Symposium, Roma, Italia, Nov. 2010. Keyword(s): JDE, HRF, Bayesian, MCMC, parallel MRI, reconstruction, sparsity, RFX, group studies. [bibtex-entry]


  15. L. Chaari, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on brain activity detection in fMRI. In IEEE ISABEL'10 Symposium, Roma, Italia, Nov. 2010. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity. [bibtex-entry]


  16. L. Chaari, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on the statistical sensitivity in fMRI. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity. [bibtex-entry]


  17. P. Ciuciu, S. Desmidt, T. Vincent, S. Roger, B. Thirion, and A. Roche. What is the statistical difference between SPM5 and the BrainVISA fMRI toolbox?. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  18. G. Varoquaux, M. Keller, J.-B. Poline, P. Ciuciu, and B. Thirion. ICA-based sparse features recovery from fMRI datasets. In 7th Proc. IEEE ISBI, Rotterdam, The Netherlands, pages 1177-1180, Apr. 2010. [bibtex-entry]


  19. T. Aso, C. Poupon, S.-I. Urayama, H. Fukuyama, and D. Le Bihan. Evaluation of Diffusion FMRI (DfMRI) with Short Event Related Paradigms. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  20. P. Ciuciu, S. Sockeel, T. Vincent, and J. Idier. Modelling the neurovascular habituation effect on fMRI time series. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 433-436, Apr. 2009. [bibtex-entry]


  21. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  22. M. Keller, M. Lavielle, M. Perrot, and A. Roche. Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis. In 12th MICCAI, London, U.K., Sep. 2009. [bibtex-entry]


  23. D. Le Bihan, T. Aso, S.-I. Urayama, C. Poupon, N Sawamoto, K. Aso, and H. Fukuyama. How Vascular Effects Contribute to Heavily Diffusion-Weighted FMRI Signal. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  24. L. Risser, J. Idier, and P. Ciuciu. Bilinear extrapolation scheme For Fast Estimation of 3D Ising Field Partition Function. Application to fMRI Time Course Analysis.. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 833-836, Nov. 2009. [bibtex-entry]


  25. L. Risser, T. Vincent, P. Ciuciu, and J. Idier. Robust extrapolation scheme for fast estimation of 3D Ising field partition functions. Application to within-subject fMRI data analysis.. In G.-Z. Yang, editor, 12th Proc. MICCAI, LNCS 5761, London, UK, pages 975-983, Sep. 2009. Springer Verlag Berlin Heidelberg. [bibtex-entry]


  26. T. Vincent, L. Risser, P. Ciuciu, and J. Idier. Spatially unsupervised analysis of within-subject fMRI data using multiple extrapolations of 3D Ising field partition functions. In 2009 IEEE international workshop on Machine Learning for Signal Processing, Grenoble, France, Sep. 2009. [bibtex-entry]


  27. T. Vincent, L. Risser, J. Idier, and P. Ciuciu. Spatially adaptive mixture modelling for analysis of fMRI time series. In Proc. 15th HBM, San Francisco, CA, USA, June 2009. [bibtex-entry]


  28. P. Ciuciu, T. Vincent, A.-L. Fouque, and A. Roche. Improved fMRI group studies based on spatially varying non-parametric BOLD signal modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 1263-1266, May 2008. [bibtex-entry]


  29. C. Damon, P. Pinel, M. Perrot, V. Michel, E. Duchesnay, J.-B. Poline, and B. Thirion. Discriminating Between Populations of Subjects Based on FMRI Data Using Sparse Features Selection and SRDA Classifier. In MICCAI 2008 Workshop on Analysis of Functional Medical Images, New York, Sept 2008. [bibtex-entry]


  30. M. Keller and A. Roche. Increased sensitivity in fMRI group analysis using mixed-effect modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 548-551, May 2008. [bibtex-entry]


  31. V. Michel, C. Damon, and B. Thirion. Mutual information-based feature selection enhances fMRI brain activity classification. In 5th Proc. IEEE ISBI, Paris, France, pages 592-595, May 2008. [bibtex-entry]


  32. C. Rabrait, P. Ciuciu, A. Ribés, C. Poupon, G. Dehaene-Lambertz, P. Leroux, D. Le Bihan, and F. Lethimonnier. Regularized Localized parallel EVI: application to the study of habituation effects in fMRI. In Proc. 16th ISMRM, Toronto, Canada, May 2008. [bibtex-entry]


  33. T. Vincent, P. Ciuciu, and B. Thirion. Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in fMRI. In 5th Proc. IEEE ISBI, Paris, France, pages 568-571, May 2008. [bibtex-entry]


  34. P. Ciuciu, P. Abry, C. Rabrait, H. Wendt, and A. Roche. Leader-based multifractal analysis for EVI fMRI time series: ongoing vs. task-related brain activity. In 4th Proc. IEEE ISBI, Arlington, VA, pages 404-407, Apr. 2007. [bibtex-entry]


  35. M. Keller, S. Mériaux, A. Roche, P. Pinel, and B. Thirion. A Mixed-Effect Statistic for Two-Sample Group Analysis in fMRI. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): permutation test, mixed-effect. [bibtex-entry]


  36. C. Rabrait, P. Ciuciu, A. Ribès, C. Poupon, P. Leroux, D. Le Bihan, and F. Lethimonnier. Localized parallel echo volume imaging at 1.5T: a first extensive fMRI study. In Proc. 15th ISMRM, 2007. [bibtex-entry]


  37. B. Thirion, A. Tucholka, M. Keller, P. Pinel, A. Roche, J.-F. Mangin, and J.-B. Poline. High level group analysis of FMRI data based on Dirichlet process mixture models. In IPMI, volume 4584 of LNCS, pages 482-494, 2007. Keyword(s): Algorithms, Brain, Brain Mapping, Computer Simulation, Evoked Potentials, Humans, Image Interpretation, Computer-Assisted, Magnetic Resonance Imaging, Models, Neurological. [bibtex-entry]


  38. T. Vincent, P. Ciuciu, and J. Idier. Application and validation of spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In 29th Proc. IEEE EMBS, Lyon , France, pages 5218-5222, Aug. 2007. [bibtex-entry]


  39. T. Vincent, P. Ciuciu, and J. Idier. Spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In 32th Proc. IEEE ICASSP, volume I, Honolulu, Hawaii, pages 325-328, Apr. 2007. [bibtex-entry]


  40. P. Ciuciu, J. Idier, and S. Makni. Modeling non-linear and non-stationary effects of the BOLD response using mixture models in fMRI. In Proc. 12th HBM CD-Rom, Florence, Italy, June 11-15 2006. [bibtex-entry]


  41. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Anatomically informed joint detection-estimation of brain activity. In Proc. 12th HBM CD-Rom, Florence, Italy, June 11-15 2006. Keyword(s): intra-subject analysis, fMRI, Bayesian inference, MCMC. [bibtex-entry]


  42. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Bayesian joint detection-estimation of brain activity using MCMC with a Gamma-Gaussian mixture prior model. In Proc. 31th Proc. IEEE ICASSP, volume V, Toulouse, France, pages 1093-1096, May 2006. Keyword(s): intra-subject analysis, fMRI, Bayesian inference, MCMC. [bibtex-entry]


  43. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Joint detection-estimation of brain activity in fMRI using an autoregressive noise model. In 3th Proc. IEEE ISBI, Arlington, VA, pages 1048-1051, Apr. 2006. [bibtex-entry]


  44. S. Mériaux, A. Roche, G. Dehaene-Lambertz, and J.-B. Poline. When do mixed-effect models fail to improve detection sensitivity in fMRI group activation maps?. In Neuroimage (HBM'06), Florence, Italy, 2006. [bibtex-entry]


  45. S. Mériaux, A. Roche, B. Thirion, and G. Dehaene-Lambertz. Robust statistics for nonparametric group analysis in fMRI. In Proc. 3th Proc. IEEE ISBI, Arlington, VA, pages 936-939, Apr. 2006. Keyword(s): robust statistics, group analysis, nonparametric tests, permutation tests, bootstrap. [bibtex-entry]


  46. B. Thirion, A. Roche, P. Ciuciu, and J.-B. Poline. Improving sensitivity and reliability of fMRI group studies through high level combination of individual subjects results. In Proc. MMBIA2006, New York, USA, June17-18 2006. [bibtex-entry]


  47. B. Thyreau, B. Thirion, G. Flandin, and J.-B. Poline. Anatomo-functional description of the brain: a probabilistic approach. In Proc. 31th Proc. IEEE ICASSP, volume V, Toulouse, France, pages 1109-1112, May 2006. Keyword(s): fMRI, functional brain imaging, Bayesian approach, parcellation, Gaussian mixture, Variational Bayes. [bibtex-entry]


  48. P. Ciuciu, Ch. Pallier, B. Thirion, S. Mériaux, G. Dehaene-Lambertz, and S. Dehaene. Hemodynamic response estimation in auditory sentence repetition. In Proc. 11th HBM, Toronto, Canada, June 2005. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment, Gibbs sampling, MCMC. [bibtex-entry]


  49. S. Makni, C. Grova, P. Ciuciu, and J.-B. Poline. An interpolation method for fMRI data extraction on the cortical surface. In Proc. 11th HBM, Toronto, Canada, June 2005. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment, Gibbs sampling, MCMC. [bibtex-entry]


  50. S. Mériaux, A. Roche, J. Catry, O. Chauvin, and J.-B. Poline. Robust statistics for fMRI group analyses. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, June 12-16 2005. [bibtex-entry]


  51. A. Roche. When is it a good time to smooth fMRI data?. In Proc. 11th HBMCD-RomNeuroimage vol 26 (1), Toronto, Canada, June 2005. [bibtex-entry]


  52. P. Ciuciu, J. Idier, A. Roche, and Ch. Pallier. Outlier detection for robust region-based estimation of the Hemodynamic Response Function in event-related fMRI. In 2th Proc. IEEE ISBI, Arlington, VA, pages 392-395, Apr. 2004. [bibtex-entry]


  53. S. Donnet, M. Lavielle, P. Ciuciu, and J.-B. Poline. Selection of temporal models for event-related fMRI. In Proc. 2th Proc. IEEE ISBI, Arlington, VA, pages 992-995, Apr. 2004. [bibtex-entry]


  54. L. Freire, J. Orchard, M. Jenkinson, and J.-F. Mangin. Reducing activation-related bias in fMRI registration. In 2nd International Conference on Medical Imaging and Augmented Reality, LNCS 3150, Beijing, China, 2004. [bibtex-entry]


  55. P.-J. Lahaye, S. Baillet, J.-B. Poline, and L. Garnero. Fusion of simultaneous fMRI/EEG data based on the electro-metabolic coupling. In Proc. 2th Proc. IEEE ISBI, Arlington, VA, pages 864-867, Apr. 2004. [bibtex-entry]


  56. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. A region-based method for the estimation of the neural impulse response in event-related fMRI. In Proc. 10th HBM, Budapest, Hungary, pages Poster number 367, June 2004. [bibtex-entry]


  57. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Semi-blind deconvolution of neural impulse response in event-related fMRI using Gibbs sampler. In Proc. 2th Proc. IEEE ISBI, Arlington, VA, pages 860-863, Apr. 2004. [bibtex-entry]


  58. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Semi-blind deconvolution of neural impulse response in fMRI using a Gibbs sampling method. In Proc. th Proc. IEEE ICASSP, volume V, Montreal, Quebec, Canada, pages 601-604, May 2004. [bibtex-entry]


  59. S. Mériaux, F. Kherif, A. Roche, M. Brett, L. Garnero, and J.-B. Poline. How frequently do we sample inhomogeneous group of subjects in fMRI studies?. In Proc. 10th HBM CD-Rom Neuroimage vol 22 (1), Budapest, Hungary, June 13-17 2004. [bibtex-entry]


  60. A. Roche, P.-J. Lahaye, and J.-B. Poline. Incremental Activation Detection in fMRI Series using Kalman Filtering. In Proc. 2st Proc. IEEE ISBI, Arlington, VA, pages 376-379, Apr. 2004. Keyword(s): fMRI, brainvisa. [bibtex-entry]


  61. A. Roche, P. Pinel, S. Dehaene, and J.-B. Poline. Solving Incrementally the Fitting and Detection Problems in fMRI Time Series. In Proc. 7th MICCAI, volume 3217 of Lecture Notes in Computer Science, Saint-Malo, France, pages 719-726, Sep. 2004. Springer Verlag. Keyword(s): fMRI. [bibtex-entry]


  62. A. Roche and J.-B. Poline. Kalman Filtering for Real-Time fMRI Analysis. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  63. B. Thirion and O. Faugeras. Nonlinear dimension reduction of fMRI data: the Laplacian embedding approach. In Proc. 2st Proc. IEEE ISBI, Arlington, VA, pages 372-375, Apr. 2004. [bibtex-entry]


  64. P. Ciuciu, J. Idier, G. Flandin, and J.-B. Poline. Estimation régularisée et non supervisée de la fonction de réponse hémodynamique en imagerie cérébrale fonctionnelle (IRMf). In Actes du 19$^{\mathrm{e}}$ colloque GRETSI, pages 312 -315, Sep. 2003. Keyword(s): fMRI, functional brain imaging, Bayesian approach, Hemodynamic Response Function, event-related experiment, drift estimation, Maximum A Posteriori, multitask, multisession, Expectation Maximization, Expectation Conditional Maximization. [bibtex-entry]


  65. G. Marrelec, P. Ciuciu, M. Pélégrini-Issac, and H. Benali. Estimation of the Hemodynamic Response Function in Event-Related Functional MRI: Directed Acyclic Graphs for a General Bayesian Inference Framework. In Chris Taylor and J. Alison Noble, editors, Proc. 18th IPMI, LNCS-2732, Ambleside, United Kingdom, pages 635-646, 2003. Springer Verlag. Keyword(s): fMRI, functional brain imaging, graph theory, Bayesian approach, Hemodynamic Response Function, event-related experiment, Gibbs sampling. [bibtex-entry]


  66. S. Mériaux, F. Kherif, C. Pallier, V. Izard, M. Brett, L. Garnero, and J.-B. Poline. Assessing the homogeneity of subject's samples for random effect analyses in fMRI. In Proc. 9th HBMCD-RomNeuroimage vol 19 (2), New York, USA, June 18-22 2003. [bibtex-entry]


  67. A. Roche, F. Kherif, G. Flandin, and J.-B. Poline. Should fMRI data be analyzed using a single BOLD response model across regions?. In NeuroImage (HBM'03), New York,, June19--22 2003. [bibtex-entry]


  68. B. Thirion and O. Faugeras. Dynamical Components Analysis of fMRI Data: A Second Order Solution. In EUROCAST, pages 552-563, 2003. [bibtex-entry]


  69. B. Thirion and O. Faugeras. Feature Detection in fMRI Data: The Information Bottleneck Approach. In Proc. 6th MICCAI, Montreal Canada, pages 83-91, Nov. 2003. [bibtex-entry]


  70. B. Thirion, F. Kherif, J.-B. Poline, and O. Faugeras. Multivariate analysis of fMRI data: it is worth using nonlinear methods ?. In Proc. 9th HBMCD-RomNeuroimagevol 19 (2), New York,, June19--22 2003. [bibtex-entry]


  71. P. Ciuciu, G. Marrelec, J. Idier, J.-B. Poline, and H. Benali. A general tool to estimate the hemodynamic response function in fMRI data. In Proc. 8th HBM, Sendai, Japan, June 2002. [bibtex-entry]


  72. P. Ciuciu, G. Marrelec, J.-B. Poline, J. Idier, and H. Benali. Robust estimation of the hemodynamic response function in asynchronous multitasks multisessions event-related fMRI paradigms. In Proc. 1st Proc. IEEE ISBI, Washington, DC, pages 847-850, July 2002. [bibtex-entry]


  73. G. Flandin, F. Kherif, X. Pennec, D. Rivière, N. Ayache, and J.-B. Poline. A new representation of fMRI data using anatomo-functional constraints. In Proc. 8th HBM, Sendai, Japan, June 2002. [bibtex-entry]


  74. G. Flandin, F. Kherif, X. Pennec, D. Rivière, N. Ayache, and J.-B. Poline. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. In Proc. 1st Proc. IEEE ISBI, Washington, DC, pages 907-910, July 2002. [bibtex-entry]


  75. L. Freire and J.-F. Mangin. Two Stage Alignment of fMRI Time Series Using the Experiment Profile to Discard Activation-Related Bias. In Proc. 5th MICCAI, LNCS 2488 (Part II), Tokyo, Japan, pages 663-670, 2002. Springer Verlag. Keyword(s): Registration, LongConfPaper. [bibtex-entry]


  76. F. Kherif, G. Flandin, O. Simon, H. Benali, and J.-B. Poline. How much subjetcs are resembling each other ? Spatial and temporal similarity measures for fMRI data. In Proc. 8th HBM, Sendai, Japan, June 2002. [bibtex-entry]


  77. A. Krainik, S. Lehéricy, H. Duffau, M. Vlaicu, P. Cornu, L. Capelle, J.-F. Mangin, Y. Menu, D. Le Bihan, and C. Marsault. Occurrence of speech disorders following surgical resection of the mesial frontal lobe: an fMRI study of the role of the SMA. In Proc. 8th HBM, pages 745, 2002. [bibtex-entry]


  78. D. Milea, S. Rivaud-Péchoux, S. Lehéricy, E. Lobel, H. Duffau, H. Capelle, J.-F. Mangin, C. Marsault, A. Berthoz, and C. Pierrot-Deseilligny. Saccadic eye movement deficits following surgical resection of frontal lobe tumors: an fMRI study. In Proc. 8th HBM, pages 760, 2002. [bibtex-entry]


  79. B. Thirion and O. Faugeras. Dynamical components analysis of fMRI data. In O. Faugeras, editor, Proc. IEEE International Symposium on Biomedical Imaging, pages 915-918, 2002. Keyword(s): biomedical MRI, independent component analysis, medical image processing, medical signal detection, spatiotemporal phenomena, time series, ICA-like criterion, autoregressive scheme, deterministic structure, dynamical components analysis, event-related design, experimental paradigm, fMRI data, global criterion, goodness of fit, localization, model priors, multivariate analysis method, real data, signal detection, spatial domain, spatiotemporal patterns, time series. [bibtex-entry]


  80. A. Andrade, F. Kherif, J.-F. Mangin, D. Le Bihan, and J.-B. Poline. Scale space searches in cortical surface analysis of fMRI data. In Proc. 6th HBM, pages S1290, 2001. [bibtex-entry]


  81. J.-B. Poline, A. Andrade, F. Kherif, S. Bahrami, I. Klein, J.-F. Mangin, K. J. Worsley, and D. Le Bihan. Using the cortical surface information for the detection of fMRI activation signal. In ISMRM/ESMRMB, Glasgow, pages 27, 2001. [bibtex-entry]


  82. B. Thirion and O. Faugeras. Revisiting non-parametric activation detection on fMRI time series. In O. Faugeras, editor, Proc. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis MMBIA 2001, pages 121-128, 2001. Keyword(s): Markov processes, biomedical MRI, image sequences, medical image processing, statistical analysis, time series, visual perception, Leuven University, Student test, a priori modelling, expected signal, experimental block design, fMRI sequences, fMRI time series, first order Markov chain, functional magnetic resonance imaging, intensity values asymptotic distribution, medical diagnostic imaging, monkey motion perception, nonparametric activation detection, statistical validation, visual tasks series. [bibtex-entry]


  83. V. Frouin, E Messegue, and J.-F. Mangin. Assessment of two fMRI motion correction algorithms. In Proc. 3th HBM, pages S458, 1997. Keyword(s): Registration. [bibtex-entry]


  84. A.-L. Paradis, J.-F. Mangin, V. Cornilleau-Pérès, I. Bloch, V. Frouin, and D. Le Bihan. Detection of periodic temporal responses in fMRI. In Proc. 3th HBM, pages S469, 1997. [bibtex-entry]


Internal reports

  1. L. Chaari, T. Vincent, F. Forbes, M. Dojat, and P. Ciuciu. Fast joint detection-estimation of evoked brain activity in event-related fMRI using a variational approach. in revision to IEEE Trans. Med. Imag., Mistis Team, INRIA Rhne-Alpes, Grenoble & LNAO, CEA-NeuroSpin, France, June 2012. [bibtex-entry]


  2. P. Ciuciu, Sophie Donnet, Marion Soumoy, and T. Vincent. Bayesian model comparison and selection in fMRI. Research Rep., NeuroSpin/CEA-I2BM, Gif-sur-Yvette, France, July 2008. Keyword(s): fMRI, model selection, MCMC, Bayes factor. [bibtex-entry]


  3. P. Ciuciu, S. Makni, J. Idier, and T. Vincent. Bayesian infernce of brain dynamics based on mixture models in fMRI. submitted to NIPS'07, NeuroSpin/CEA, June 2007. [bibtex-entry]



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