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Publications of year 2007

Thesis

  1. S. Mériaux. Diagnostic d'homogénéité et inférence non-paramétrique pour l'analyse de groupe en imagerie par résonance magnétique fonctionnelle. PhD thesis, Université de Paris-Sud, Orsay , France, Dec. 2007. Keyword(s): group analysis, fMRI, nonparametric statistics, mixed effects. [bibtex-entry]


Articles in journal or book chapters

  1. J. Dauguet, T. Delzescaux, F. Condé, J.-F. Mangin, N. Ayache, P. Hantraye, and V. Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. J Neurosci Methods, 164(1):191-204, 2007. Keyword(s): Registration, brainvisa. [bibtex-entry]


  2. A. Dubois, J. Dauguet, A.S. Hérard, L. Besret, E. Duchesnay, V. Frouin, P. Hantraye, G. Bonvento, and T. Delzescaux. Automated three-dimensional analysis of histological and autoradiographic rat brain sections: application to an activation study. J Cereb Blood Flow Metab., 27(10):1742-55, 2007. Keyword(s): brainvisa. [bibtex-entry]


  3. E. Duchesnay, A. Cachia, A. Roche, D. Rivière, Y. Cointepas, D. Papadopoulos-Orfanos, M. Zilbovicius, J.-L. Martinot, and J.-F. Mangin. Classification from cortical folding patterns. IEEE Trans. Med. Imag., 26(4):553-565, 2007. Keyword(s): Classification, Sulci, Anatomy, brainvisa. [bibtex-entry]


  4. G. Flandin and W. Penny. Bayesian fMRI data analysis with sparse spatial basis function priors. Neuroimage, 34(3):1108-1125, Feb. 2007. [bibtex-entry]


  5. J. Houenou, M. Wessa, G. Douaud, M. Leboyer, S. Chanraud, M. Perrin, C. Poupon, J.-L. Martinot, and M.-L. Paillère-Martinot. Increased white matter connectivity in euthymic bipolar patients: diffusion tensor tractography between the subgenual cingulate and the amygdalo-hippocampal complex. Mol Psychiatry, 12(11):1001-10, 2007. Keyword(s): brainvisa. [bibtex-entry]


  6. E. Jouvent, A. Viswanathan, J.-F. Mangin, M. O'Sullivan, J. P. Guichard, A. Gschwendtner, R. Cumurciuc, F. Buffon, N. Peters, C. Pachai, M. G. Bousser, M. Dichgans, and H. Chabriat. Brain atrophy is related to lacunar lesions and tissue microstructural changes in cadasil. Stroke, 38:1786-1790, 2007. [bibtex-entry]


  7. A. Kas, P. Payoux, M. O. Habert, Z. Malek, Y. Cointepas, G El Fakhri, P. Chaumet-Riffaud, E. Itti, and P. Remy. Validation of a standardized normalization template for statistical parametric mapping analysis of 123I-FP-CIT images. J Nucl Med, 48(9):1459-67, 2007. Keyword(s): brainvisa. [bibtex-entry]


  8. S. Mouchet, A. Cachia, O. Canceil, S. Rodrigo, D. Willard, C. Oppenheim, J.-F. Meder, J.-L. Martinot, and M.-O. Krebs. Sensory dysfunction is correlated to cerebellar volume reduction in early schizophrenia. Schizophrenia Research, 91(1-3):266-269, 2007. Keyword(s): Anatomy. [bibtex-entry]


  9. P. Pinel, B. Thirion, S. Mériaux, A. Jobert, J. Serres, D. Le Bihan, J.-B. Poline, and S. Dehaene. Fast reproducible identification and large-scale databasing of individual functional cognitive networks. BMC Neurosci., 8(1):91, Oct. 2007. [bibtex-entry]


  10. A. Roche. A Four-Dimensional Registration Algorithm With Application to Joint Correction of Motion and Slice Timing in fMRI. IEEE Trans. Med. Imag., 30(8):1546-1554, 2007. [bibtex-entry]


  11. A. Roche, S. Mériaux, M. Keller, and B. Thirion. Mixed-effects statistics for group analysis in fMRI: A nonparametric maximum likelihood approach. Neuroimage, 38:501-510, 2007. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  12. S. Rodrigo, O. Naggara, C. Oppenheim, N. Golestani, C. Poupon, Y. Cointepas, J.-F. Mangin, D. Le Bihan, and J. F. Meder. Human subinsular asymmetry studied by diffusion tensor imaging and fiber tracking. AJNR Am J Neuroradiol., 28(8):1526-31, 2007. Keyword(s): Diffusion. [bibtex-entry]


  13. S. Rodrigo, C Oppenheim, F Chassoux, N Golestani, Y. Cointepas, C. Poupon, F Semah, J.-F. Mangin, D. Le Bihan, and J. F. Meder. Uncinate fasciculus fiber tracking in mesial temporal lobe epilepsy. Initial findings. Eur Radiol, 17(7):1663-8, 2007. Keyword(s): Diffusion. [bibtex-entry]


  14. B. Thirion, P. Pinel, S. Mériaux, A. Roche, S. Dehaene, and J.-B. Poline. Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.. Neuroimage, 35(1):105-120, March 2007. Keyword(s): Algorithms, Brain Mapping, Cluster Analysis, Cohort Studies, Databases, Factual, Humans, Image Processing, Computer-Assisted, methods/statistics /&/ numerical data, Magnetic Resonance Imaging, methods/statistics /&/ numerical data, Models, Neurological, Models, Statistical, Reproducibility of Results, Sample Size. [bibtex-entry]


  15. B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, and J.-B. Poline. Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies. IEEE Trans. Med. Imag., 26(9):1256-1269, Sep. 2007. [bibtex-entry]


Conference articles

  1. P. Ciuciu, P. Abry, C. Rabrait, H. Wendt, and A. Roche. Leader-based multifractal analysis for EVI fMRI time series: ongoing vs. task-related brain activity. In 4th Proc. IEEE ISBI, Arlington, VA, pages 404-407, Apr. 2007. [bibtex-entry]


  2. P. Ciuciu, J. Idier, T. Veit, and T. Vincent. Application du rééchantillonnage stochastique de l'échelle en détection-estimation de l'activité cérébrale par IRMf. In Actes du 21$^{\mathrm{e}}$ colloque GRETSI, Troyes, France, pages 373-376, Sep. 2007. [bibtex-entry]


  3. Alexandre Gramfort, Benoit Cottereau, Maureen Clerc, Bertrand Thirion, and Sylvain Baillet. Challenging the estimation of cortical activity from MEG with simulatedfMRI-constrained retinotopic maps. In Proc. of the 29th IEEE EMBS Annual international conference, volume 1, pages 4945-4948, 2007. [bibtex-entry]


  4. M. Keller, S. Mériaux, A. Roche, P. Pinel, and B. Thirion. A Mixed-Effect Statistic for Two-Sample Group Analysis in fMRI. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): permutation test, mixed-effect. [bibtex-entry]


  5. P. Kochunov, J. L. Lancaster, S. Narayana, G. Operto, O. Coulon, J.-F. Mangin, and P. T. Fox. Relationship between regional FDG uptake and other markers of cerebral health in normal aging. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  6. P. Kochunov, J. Rogers, D. C. Glahn, J. L. Lancaster, O. Coulon, J.-F. Mangin, D. Rivière, J. Blangero, and P. T. Fox. Genetic analysis of cerebral volume and cortical sulci in baboons. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  7. S. Makni, P. Ciuciu, J. Idier, and J.-B. Poline. Approche Bayésienne de détection-estimation conjointe de l'activité cérébrale en IRMf. In 5th TAIMA, Hammamet, Tunisie, pages 404-410, May 2007. [bibtex-entry]


  8. J.-F. Mangin, V. El Kouby, P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, and C. Poupon. The structural paradigm when analyzing diffusion data. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. Keyword(s): brainvisa. [bibtex-entry]


  9. C. Poupon, F. Poupon, A. Roche, Y. Cointepas, J. Dubois, and J.-F. Mangin. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 27-35, 2007. [bibtex-entry]


  10. C. Poupon, B. Rieul, M. Perrin, F. Poupon, and J.-F. Mangin. Diffusion phantoms dedicated to the study and validation of HARDI models. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. [bibtex-entry]


  11. C. Rabrait, P. Ciuciu, A. Ribès, C. Poupon, P. Leroux, D. Le Bihan, and F. Lethimonnier. Localized parallel echo volume imaging at 1.5T: a first extensive fMRI study. In Proc. 15th ISMRM, 2007. [bibtex-entry]


  12. Z. Y. Sun, D. Rivière, F. Poupon, J. Régis, and J.-F. Mangin. Automatic inference of sulcus patterns using 3D moment invariants. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 515-22, 2007. Keyword(s): brainvisa. [bibtex-entry]


  13. B. Thirion, A. Tucholka, M. Keller, P. Pinel, A. Roche, J.-F. Mangin, and J.-B. Poline. High level group analysis of FMRI data based on Dirichlet process mixture models. In IPMI, volume 4584 of LNCS, pages 482-494, 2007. Keyword(s): Algorithms, Brain, Brain Mapping, Computer Simulation, Evoked Potentials, Humans, Image Interpretation, Computer-Assisted, Magnetic Resonance Imaging, Models, Neurological. [bibtex-entry]


  14. T. Vincent, P. Ciuciu, and J. Idier. Application and validation of spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In 29th Proc. IEEE EMBS, Lyon , France, pages 5218-5222, Aug. 2007. [bibtex-entry]


  15. T. Vincent, P. Ciuciu, and J. Idier. Mélanges spatiaux pour la détection-estimation conjointe de l'activité cérébrale en imagerie fonctionnelle (IRMf). In Actes du 21$^{\mathrm{e}}$ colloque GRETSI, Troyes, France, pages 133-136, Sep. 2007. [bibtex-entry]


  16. T. Vincent, P. Ciuciu, and J. Idier. Spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In 32th Proc. IEEE ICASSP, volume I, Honolulu, Hawaii, pages 325-328, Apr. 2007. [bibtex-entry]


Internal reports

  1. P. Ciuciu, S. Makni, J. Idier, and T. Vincent. Bayesian infernce of brain dynamics based on mixture models in fMRI. submitted to NIPS'07, NeuroSpin/CEA, June 2007. [bibtex-entry]


Miscellaneous

  1. E. Falina. Modélisation de la variabilité inter-essais de l'activité cérébrale en IRMf. Msc thesis, Université de Paris-Sud, Gif-sur-Yvette, France, Sep. 2007. [bibtex-entry]


  2. A.-L. Fouque. Déploiement sur la plate-forme logicielle BrainVISA d'algorithmes d'analyse de données d'Imagerie par Résonance Magnétique fonctionnelle. Msc thesis, Université de Paris-Est Marne-la-Vallée, IMAC, Gif-sur-Yvette, France, Sep. 2007. [bibtex-entry]


  3. P. Roca, and D. Rivière, and J.-F. Mangin. Etude de l'équation eikonale et nouveaux descripteurs des sillons du cortex. Master's thesis, Supélec, Université Paul Verlaine de Metz, 2007. Keyword(s): brainvisa. [bibtex-entry]



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