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Publications of year 2008

Thesis

  1. P. Ciuciu. Dynamique cérébrale en neuro-imagerie fonctionnelle. Habilitation thesis, Orsay, France, 2008. Keyword(s): fMRI, EM, MCMC, HRF, wavelets, multifractal, mixture models.
    @phdthesis{Ciuciu08,
    author = {P. Ciuciu},
    title = {Dynamique cérébrale en neuro-imagerie fonctionnelle},
    year = 2008,
    type = {{H}abilitation thesis},
    address = {Orsay, France},
    keywords = {fMRI, EM, MCMC, HRF, wavelets, multifractal, mixture models},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/CiuciuHDR08.pdf} 
    }
    


Articles in journal or book chapters

  1. T. Adali, Z.J. Wang, M.J. Mc Keown, P. Ciuciu, L.K. Hansen, A. Cichocki, and V.D. Calhoun. Introduction to the issue on fMRI analysis for human brain mapping. IEEE Journal of Selected Topics in Signal Processing, 2(6):813-816, Dec. 2008.
    @article{Adali08,
    author = {Adali, T. and Wang, Z.J. and Mc Keown, M.J. and Ciuciu, P. and Hansen, L.K. and Cichocki, A. and Calhoun, V.D.},
    title = {Introduction to the issue on fMRI analysis for human brain mapping},
    journal = {{IEEE Journal of Selected Topics in Signal Processing}},
    year = 2008,
    month = {Dec.},
    volume = 2,
    number = 6,
    pages = {813--816} 
    }
    


  2. J. Andoh, E Artiges, C Pallier, D. Rivière, J.-F. Mangin, M. L. Paillère-Martinot, and J.-L. Martinot. Priming frequencies of transcranial magnetic stimulation over Wernicke's area modulate word detection. Cereb. Cortex, 18(1):210-6, 2008. Keyword(s): brainvisa.
    @article{Andoh08,
    author = {J. Andoh and E Artiges and C Pallier and D. Rivière and J.-F. Mangin and M. L. Paillère-Martinot and J.-L. Martinot},
    title = {Priming frequencies of transcranial magnetic stimulation over {W}ernicke's area modulate word detection},
    journal = {{{C}ereb. {C}ortex}},
    year = 2008,
    volume = 18,
    number = 1,
    pages = {210--6},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Andoh-CC08.pdf} 
    }
    


  3. Anne Botzung, Ekaterina Denkova, P. Ciuciu, Christian Scheiber, and Lilianne Manning. The neural bases of the constructive nature of autobiographical memories studied with a self-paced fMRI design. Memory, 16(4):351-363, Apr. 2008. Keyword(s): autobiographical memories, fMRI, self-paced, Hemodynamic Response Function.
    @article{Botzung08,
    author = {Botzung, Anne and Denkova, Ekaterina and P. Ciuciu and Scheiber, Christian and Manning, Lilianne},
    title = {The neural bases of the constructive nature of autobiographical memories studied with a self-paced {fMRI} design},
    journal = {Memory},
    year = 2008,
    month = {Apr.},
    volume = 16,
    number = 4,
    pages = {351--363},
    keywords = {autobiographical memories, fMRI, self-paced, Hemodynamic Response Function},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Botzung08.pdf} 
    }
    


  4. A. Cachia, M.-L. Paillère-Martinot, A. Galinowski, D. Januel, R. De Beaurepaire, F. Bellivier, E. Artiges, T. Gallarda, J. Andoh, D. Bartrés-Faz, E. Duchesnay, D. Rivière, Y. Cointepas, M. Plaze, J.-F. Mangin, and J.-L. Martinot. Cortical folding abnormalities in schizophrenia patients with resistant auditory hallucinations. Neuroimage, 39(3):927-935, 2008. Keyword(s): Sulci, Anatomy, brainvisa.
    @article{Cachia08,
    author = {A. Cachia and Paillère-Martinot, M.-L. and Galinowski, A. and Januel, D. and De Beaurepaire, R. and Bellivier, F. and Artiges, E. and Gallarda, T. and Andoh, J. and Bartrés-Faz, D. and E. Duchesnay and D. Rivière and Y. Cointepas and Plaze, M. and J.-F. Mangin and J.-L. Martinot},
    title = {Cortical folding abnormalities in schizophrenia patients with resistant auditory hallucinations},
    journal = {{{N}euroimage}},
    year = 2008,
    volume = 39,
    number = 3,
    pages = {927--935},
    institution = {SHFJ/CEA},
    keywords = {Sulci,Anatomy,brainvisa},
    pdf = {http://static.lnao.fr/papers/Cachia-NI08.pdf} 
    }
    


  5. S. Chanraud, M. Reynaud, M. Wessa, J. Penttilä, N. Kostogianni, A. Cachia, E. Artiges, F. Delain, M. Perrin, H-J. Aubin, Y. Cointepas, C. Martelli, and J-L. Martinot. Diffusion tensor tractography in mesencephalic bundles: relation to mental flexibility in detoxified alcohol-dependent subjects. Neuropsychopharmacology, 34(5):1223-1232, 2008. Keyword(s): brainvisa.
    @article{Chanraud08,
    author = {S. Chanraud and M. Reynaud and M. Wessa and J. Penttilä and N. Kostogianni and A. Cachia and E. Artiges and F. Delain and M. Perrin and H-J. Aubin and Y. Cointepas and C. Martelli and J-L. Martinot},
    title = {Diffusion tensor tractography in mesencephalic bundles: relation to mental flexibility in detoxified alcohol-dependent subjects},
    journal = {Neuropsychopharmacology},
    year = 2008,
    volume = 34,
    number = 5,
    pages = {1223--1232},
    keywords = {brainvisa},
    timestamp = {2009.01.06} 
    }
    


  6. G. Chételat, M. Fouquet, G. Kalpouzos, I. Denghien, V. De la Sayette, F. Viader, F. Mézenge, B. Landeau, J. C. Baron, F. Eustache, and B. Desgranges. Three-dimensional surface mapping of hippocampal atrophy progression from MCI to AD and over normal aging as assessed using voxel-based morphometry. Neuropsychologia, 46(6):1721-1731, 2008.
    @article{chetelat08,
    author = {G. Chételat and M. Fouquet and G. Kalpouzos and I. Denghien and De la Sayette, V. and F. Viader and F. Mézenge and B. Landeau and J. C. Baron and F. Eustache and B. Desgranges},
    title = {Three-dimensional surface mapping of hippocampal atrophy progression from {MCI} to {AD} and over normal aging as assessed using voxel-based morphometry},
    journal = {Neuropsychologia},
    year = 2008,
    volume = 46,
    number = 6,
    pages = {1721--1731} 
    }
    


  7. P. Ciuciu, P. Abry, C. Rabrait, and H. Wendt. Log wavelet Leaders cumulant based multifractal analysis of EVI fMRI time series: evidence of scaling in ongoing and evoked brain activity. IEEE Journal of Selected Topics in Signal Processing, 2(6):929-943, Dec. 2008.
    @article{Ciuciu08e,
    author = {P. Ciuciu and Abry, P. and Rabrait, C. and Wendt, H.},
    title = {Log wavelet Leaders cumulant based multifractal analysis of {EVI fMRI} time series: evidence of scaling in ongoing and evoked brain activity},
    journal = {{IEEE Journal of Selected Topics in Signal Processing}},
    year = 2008,
    month = {Dec.},
    volume = 2,
    number = 6,
    pages = {929--943},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/J-STSP-FAHBM-116--R2-2008_Ciuciu_FINAL.pdf} 
    }
    


  8. M. D. Cykowski, P Kochunov, R. J. Ingham, J. C. Ingham, J.-F. Mangin, D. Rivière, J. L. Lancaster, and P. T. Fox. Perisylvian Sulcal Morphology and Cerebral Asymmetry Patterns in Adults Who Stutter. Cereb. Cortex, 18(3):571-83, 2008. Keyword(s): Sulci, brainvisa.
    @article{Cykowski08,
    author = {M. D. Cykowski and P Kochunov and R. J. Ingham and J. C. Ingham and J.-F. Mangin and D. Rivière and J. L. Lancaster and P. T. Fox},
    title = {Perisylvian Sulcal Morphology and Cerebral Asymmetry Patterns in Adults Who Stutter},
    journal = {{{C}ereb. {C}ortex}},
    year = 2008,
    volume = 18,
    number = 3,
    pages = {571--83},
    keywords = {Sulci,brainvisa},
    pdf = {http://static.lnao.fr/papers/Cykowski-CC08.pdf} 
    }
    


  9. J. Dubois, M. Benders, C. Borradori-Tolsa, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S. V. Sizonenko, S. K. Warfield, J.-F. Mangin, and P. S. Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development. Brain, 131(8):2028-41, 2008. Keyword(s): Sulci, Anatomy, brainvisa.
    @article{Dubois08e,
    author = {J. Dubois and M. Benders and C. Borradori-Tolsa and A. Cachia and F. Lazeyras and Ha-Vinh Leuchter, R. and S. V. Sizonenko and S. K. Warfield and J.-F. Mangin and P. S. Hüppi},
    title = {Primary cortical folding in the human newborn: an early marker of later functional development},
    journal = {Brain},
    year = 2008,
    volume = 131,
    number = 8,
    pages = {2028--41},
    keywords = {Sulci,Anatomy,brainvisa},
    pdf = {http://static.lnao.fr/papers/Dubois-Brain08.pdf} 
    }
    


  10. J. Dubois, M. Benders, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S.V. Sizonenko, C. Borradori-Tolsa, J.-F. Mangin, and P. S. Hüppi. Mapping the early cortical folding process in the preterm newborn brain. Cereb. Cortex, 18(6):1444-54, 2008. Keyword(s): Sulci, Anatomy, brainvisa.
    @article{Dubois08d,
    author = {J. Dubois and M. Benders and A. Cachia and F. Lazeyras and R. Ha-Vinh Leuchter and S.V. Sizonenko and C. Borradori-Tolsa and J.-F. Mangin and P. S. Hüppi},
    title = {Mapping the early cortical folding process in the preterm newborn brain},
    journal = {{{C}ereb. {C}ortex}},
    year = 2008,
    volume = 18,
    number = 6,
    pages = {1444--54},
    keywords = {Sulci,Anatomy,brainvisa},
    pdf = {http://static.lnao.fr/papers/Dubois-CC08.pdf} 
    }
    


  11. J. Dubois, G. Dehaene-Lambertz, M. Perrin, J.-F. Mangin, Y. Cointepas, E. Duchesnay, D. Le Bihan, and L. Hertz-Pannier. Asynchrony of the early maturation of white matter bundles in healthy infants: quantitative landmarks revealed noninvasively by diffusion tensor imaging. Hum. Brain Mapp., 29(1):14-27, 2008. Keyword(s): brainvisa.
    @article{Dubois08b,
    author = {J. Dubois and G. Dehaene-Lambertz and M. Perrin and J.-F. Mangin and Y. Cointepas and E. Duchesnay and Le~Bihan, D. and L. Hertz-Pannier},
    title = {Asynchrony of the early maturation of white matter bundles in healthy infants: quantitative landmarks revealed noninvasively by diffusion tensor imaging},
    journal = {{{H}um. Brain {M}app.}},
    year = 2008,
    volume = 29,
    number = 1,
    pages = {14--27},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Dubois-HBM08.pdf} 
    }
    


  12. J. Dubois, G. Dehaene-Lambertz, C. Soarès, Y. Cointepas, D. Le Bihan, and L. Hertz-Pannier. Microstructural correlates of infant functional development: example of the visual pathways. J Neurosci., 28(8):1943-8, 2008. Keyword(s): Diffusion, brainvisa.
    @article{Dubois08,
    author = {J. Dubois and G. Dehaene-Lambertz and C. Soarès and Y. Cointepas and Le~Bihan, D. and L. Hertz-Pannier},
    title = {Microstructural correlates of infant functional development: example of the visual pathways},
    journal = {J Neurosci.},
    year = 2008,
    volume = 28,
    number = 8,
    pages = {1943--8},
    keywords = {Diffusion,brainvisa},
    pdf = {http://static.lnao.fr/papers/dubois_jneuro.pdf} 
    }
    


  13. A. Dubois, A. S. Hérard, G. Flandin, E. Duchesnay, L. Besret, V. Frouin, P. Hantraye, G. Bonvento, and T. Delzescaux. Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation. Neuroimage, 40(2):482-494, 2008. Keyword(s): brainvisa.
    @article{ADubois08,
    author = {A. Dubois and A. S. Hérard and G. Flandin and E. Duchesnay and L. Besret and V. Frouin and P. Hantraye and G. Bonvento and T. Delzescaux},
    title = {Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation},
    journal = {Neuroimage},
    year = 2008,
    volume = 40,
    number = 2,
    pages = {482--494},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/ADubois-NI08.pdf} 
    }
    


  14. S. Epelbaum, P. Pinel, R. Gaillard, C. Delmaire, M. Perrin, S. Dupont, S. Dehaene, and L. Cohen. Pure alexia as a disconnection syndrome: new diffusion imaging evidence for an old concept. Cortex, 44(8):962-74, 2008. Keyword(s): Diffusion, brainvisa, U562, CENIR, UPMC.
    @article{Epelbaum08,
    author = {S. Epelbaum and P. Pinel and R. Gaillard and C. Delmaire and M. Perrin and S. Dupont and S. Dehaene and L. Cohen},
    title = {Pure alexia as a disconnection syndrome: new diffusion imaging evidence for an old concept},
    journal = {Cortex},
    year = 2008,
    volume = 44,
    number = 8,
    pages = {962--74},
    keywords = {Diffusion,brainvisa, U562, CENIR, UPMC} 
    }
    


  15. E. Jouvent, J.-F. Mangin, R. Porcher, A. Viswanathan, M. O'Sullivan, J.-P. Guichard, M. Dichgans, M.-G. Bousser, and H. Chabriat. Cortical changes in cerebral small vessel diseases: a 3D MRI study of cortical morphology in CADASIL. Brain, 131(8):2201-8, 2008. Keyword(s): brainvisa.
    @article{Jouvent08,
    author = {E. Jouvent and J.-F. Mangin and R. Porcher and A. Viswanathan and O'Sullivan, M. and J.-P. Guichard and M. Dichgans and M.-G. Bousser and H. Chabriat},
    title = {Cortical changes in cerebral small vessel diseases: a {3D} {MRI} study of cortical morphology in {CADASIL}},
    journal = {Brain},
    year = 2008,
    volume = 131,
    number = 8,
    pages = {2201--8},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Jouvent-Brain08.pdf} 
    }
    


  16. M. Keller, A. Roche, A. Tucholka, and B.Thirion. Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling. Statistica Sinica, 18(4):1357-1374, 2008.
    @article{Keller08,
    author = {M. Keller and A. Roche and A. Tucholka and B.Thirion},
    title = {{Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling}},
    journal = {{Statistica Sinica}},
    year = 2008,
    volume = 18,
    number = 4,
    pages = {1357--1374} 
    }
    


  17. P. Kochunov, P.M. Thompson, T.R. Coyle, J. L. Lancaster, V. Kochunov, D.R. Royall, J.-F. Mangin, D. Rivière, and P. T. Fox. Relationship among neuroimaging indices of cerebral health during normal aging. Hum. Brain Mapp., 29(1):36-45, 2008. Keyword(s): Sulci, Diffusion, brainvisa.
    @article{Kochunov08,
    author = {P. Kochunov and P.M. Thompson and T.R. Coyle and J. L. Lancaster and V. Kochunov and D.R. Royall and J.-F. Mangin and D. Rivière and P. T. Fox},
    title = {Relationship among neuroimaging indices of cerebral health during normal aging},
    journal = {{{H}um. Brain {M}app.}},
    year = 2008,
    volume = 29,
    number = 1,
    pages = {36--45},
    keywords = {Sulci,Diffusion,brainvisa},
    pdf = {http://static.lnao.fr/papers/Kochunov-HBM08.pdf} 
    }
    


  18. S. Makni, J. Idier, T. Vincent, B. Thirion, G. Dehaene-Lambertz, and P. Ciuciu. A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI. Neuroimage, 41(3):941-969, July 2008. Keyword(s): fMRI.
    @article{Makni08,
    author = {S. Makni and J. Idier and T. Vincent and B. Thirion and Dehaene-Lambertz, G. and P. Ciuciu},
    title = {A fully {B}ayesian approach to the parcel-based detection-estimation of brain activity in {fMRI}},
    journal = {{{N}euroimage}},
    year = 2008,
    month = {July},
    volume = 41,
    number = 3,
    pages = {941--969},
    keywords = {fMRI} 
    }
    


  19. R. Maroy, R. Boisgard, C. Comtat, V. Frouin, P. Cathier, E. Duchesnay, F. Dollé, P. E.Nielsen, R. Trébossen, and B. Tavitian. Segmentation of rodent whole-body dynamic PET images: an unsupervised method based on voxel dynamics. IEEE Trans Med Imaging, 27(3):342-54, 2008. Keyword(s): brainvisa.
    @article{Maroy08,
    author = {R. Maroy and R. Boisgard and C. Comtat and V. Frouin and P. Cathier and E. Duchesnay and F. Dollé and P. E.Nielsen and R. Trébossen and B. Tavitian},
    title = {Segmentation of rodent whole-body dynamic {PET} images: an unsupervised method based on voxel dynamics},
    journal = {IEEE Trans Med Imaging},
    year = 2008,
    volume = 27,
    number = 3,
    pages = {342--54},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Maroy-TMI08.pdf} 
    }
    


  20. M. O'Sullivan, E. Jouvent, P. G. Saemann, J.-F. Mangin, A. Viswanathan, A. Gschwendtner, L. Bracoud, C. Pachai, H. Chabriat, and M. Dichgans. Measurement of brain atrophy in subcortical vascular disease: a comparison of different approaches and the impact of ischaemic lesions. Neuroimage, 43(2):312-20, 2008.
    @article{OSullivan08,
    author = {M. O'Sullivan and E. Jouvent and P. G. Saemann and J.-F. Mangin and A. Viswanathan and A. Gschwendtner and L. Bracoud and C. Pachai and H. Chabriat and M. Dichgans},
    title = {Measurement of brain atrophy in subcortical vascular disease: a comparison of different approaches and the impact of ischaemic lesions},
    journal = {Neuroimage},
    year = 2008,
    volume = 43,
    number = 2,
    pages = {312--20} 
    }
    


  21. J. Penttilä, A. Cachia, M.-L. Paillère-Martinot, J.-F. Mangin, L. Burke, R. Corrigall, S. Frangou, and J.-L. Martinot. Global and Temporal Cortical Folding in Patients With Early-Onset Schizophrenia. Journal of the American Academy of Child & Adolescent Psychiatry, 47(10):1125-1133, 2008. Keyword(s): Sulci, Anatomy.
    @article{Penttila08,
    author = {J. Penttilä and A. Cachia and M.-L. Paillère-Martinot and J.-F. Mangin and L. Burke and R. Corrigall and S. Frangou and J.-L. Martinot},
    title = {Global and Temporal Cortical Folding in Patients With Early-Onset Schizophrenia},
    journal = {Journal of the American Academy of Child \& Adolescent Psychiatry},
    year = 2008,
    volume = 47,
    number = 10,
    pages = {1125--1133},
    keywords = {Sulci,Anatomy} 
    }
    


  22. M. Perrin, Y. Cointepas, A. Cachia, C. Poupon, B. Thirion, D. Rivière, P. Cathier, V. El Kouby, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging. Int J Biomed Imaging, 2008. Keyword(s): Diffusion, brainvisa.
    @article{Perrin08,
    author = {M. Perrin and Y. Cointepas and A. Cachia and C. Poupon and B. Thirion and D. Rivière and P. Cathier and El~Kouby, V. and A. Constantinesco and Le~Bihan, D. and J.-F. Mangin},
    title = {Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging},
    journal = {Int J Biomed Imaging},
    year = 2008,
    keywords = {Diffusion,brainvisa},
    pdf = {http://static.lnao.fr/papers/Perrin-IJBI08.pdf} 
    }
    


  23. C. Poupon, B. Rieul, I. Kezele, M. Perrin, F. Poupon, and J.-F. Mangin. New diffusion phantoms dedicated to the study and validation of HARDI models. Magnetic Resonance in Medicine, 60(6):1276-83, 2008.
    @article{Poupon08b,
    author = {C. Poupon and B. Rieul and I. Kezele and M. Perrin and F. Poupon and J.-F. Mangin},
    title = {New diffusion phantoms dedicated to the study and validation of HARDI models},
    journal = {Magnetic Resonance in Medicine},
    year = 2008,
    volume = 60,
    number = 6,
    pages = {1276--83} 
    }
    


  24. C. Poupon, A. Roche, J. Dubois, J.-F. Mangin, and F. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. Medical Image Analysis, 12(5):527-34, 2008.
    @article{Poupon08a,
    author = {C. Poupon and A. Roche and J. Dubois and J.-F. Mangin and F. Poupon},
    title = {Real-time {MR} diffusion tensor and {Q-ball} imaging using {Kalman} filtering},
    journal = {Medical Image Analysis},
    year = 2008,
    volume = 12,
    number = 5,
    pages = {527--34} 
    }
    


  25. C. Rabrait, P. Ciuciu, A. Ribès, C. Poupon, P. Leroux, V. Lebon, G. Dehaene-Lambertz, D. Le Bihan, and F. Lethimonnier. High temporal resolution functional MRI using parallel echo volume imaging. Journal of Magnetic Resonance Imaging, 27(4):744-753, Mar. 2008.
    @article{Rabrait08b,
    author = {Rabrait, C. and P. Ciuciu and Ribès, A. and Poupon, C. and Leroux, P. and Lebon, V. and Dehaene-Lambertz, G. and Le~Bihan, D. and Lethimonnier, F.},
    title = {High temporal resolution functional {MRI} using parallel echo volume imaging},
    journal = {Journal of Magnetic Resonance Imaging},
    year = 2008,
    month = {Mar.},
    volume = 27,
    number = 4,
    pages = {744--753},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Rabrait08.pdf} 
    }
    


Conference articles

  1. G. Auzias, J. A. Glaunès, A. Cachia, P. Cathier, E. Bardinet, O. Colliot, J.-F. Mangin, A. Trouvé, and S. Baillet. Multi-scale diffeomorphic cortical registration under manifold sulcal constraints. In 5th Proc. IEEE ISBI, Paris, France, pages 1127-1130, 2008.
    @inproceedings{Auzias08,
    author = {G. Auzias and J. A. Glaunès and A. Cachia and P. Cathier and E. Bardinet and O. Colliot and J.-F. Mangin and A. Trouvé and S. Baillet},
    title = {Multi-scale diffeomorphic cortical registration under manifold sulcal constraints},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {1127--1130},
    address = {Paris, France},
    pdf = {http://static.lnao.fr/papers/Auzias-ISBI08.pdf} 
    }
    


  2. M. Bhattacharjee, A. Pitiot, A. Roche, D. Dormont, and E. Bardinet. Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs using Confidence-Based Block-Matching. In MICCAI (MICCAI'08), LNCS, New York, USA, Sep. 2008. Springer Verlag.
    @inproceedings{Bhattacharjee08,
    author = {Bhattacharjee, M. and Pitiot, A. and A. Roche and Dormont, D. and Bardinet, E.},
    title = {{Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs using Confidence-Based Block-Matching}},
    booktitle = {{{MICCAI}} (MICCAI'08)},
    year = 2008,
    series = {LNCS},
    address = {New York, USA},
    month = {Sep.},
    publisher = {Springer Verlag} 
    }
    


  3. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. Autocalibrated regularized parallel MRI reconstruction in the wavelet domain. In 5th Proc. IEEE ISBI, Paris, France, pages 756-759, May 2008.
    @inproceedings{Chaari08,
    author = {L. Chaari and J.-C. Pesquet and A. Benazza-Benyahia and P. Ciuciu},
    title = {Autocalibrated regularized parallel {MRI} reconstruction in the wavelet domain},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {756--759},
    address = {Paris, France},
    month = {May},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Chaari08.pdf} 
    }
    


  4. P. Ciuciu, T. Vincent, A.-L. Fouque, and A. Roche. Improved fMRI group studies based on spatially varying non-parametric BOLD signal modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 1263-1266, May 2008.
    @inproceedings{Ciuciu08b,
    author = {P. Ciuciu and T. Vincent and Fouque, A.-L. and Roche, A.},
    title = {Improved {fMRI} group studies based on spatially varying non-parametric {BOLD} signal modeling},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {1263--1266},
    address = {Paris, France},
    month = {May},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Ciuciu08.pdf} 
    }
    


  5. C. Damon, P. Pinel, M. Perrot, V. Michel, E. Duchesnay, J.-B. Poline, and B. Thirion. Discriminating Between Populations of Subjects Based on FMRI Data Using Sparse Features Selection and SRDA Classifier. In MICCAI 2008 Workshop on Analysis of Functional Medical Images, New York, Sept 2008.
    @conference{Damon08,
    author = {Damon, C. and Pinel, P. and Perrot, M. and Michel, V. and E. Duchesnay and J.-B. Poline and B. Thirion},
    title = {Discriminating Between Populations of Subjects Based on {FMRI} Data Using Sparse Features Selection and {SRDA} Classifier},
    booktitle = {MICCAI 2008 Workshop on Analysis of Functional Medical Images},
    year = 2008,
    address = {New York},
    month = {Sept},
    owner = {cd215950} 
    }
    


  6. A. Dubois, J. Dauguet, N. Souedet, A. S. Hérard, D. Rivière, Y. Cointepas, G. Bonvento, P. Hantraye, and T. Delzescaux. BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the 3D reconstruction of anatomo-functional brain sections in rodents. In 38th annual meeting of the Society for Neuroscience, Washington, 2008. Keyword(s): brainvisa.
    @inproceedings{ADubois08b,
    author = {A. Dubois and J. Dauguet and N. Souedet and A. S. Hérard and D. Rivière and Y. Cointepas and G. Bonvento and P. Hantraye and T. Delzescaux },
    title = {BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the {3D} reconstruction of anatomo-functional brain sections in rodents},
    booktitle = {38th annual meeting of the Society for Neuroscience},
    year = 2008,
    address = {Washington},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/ADubois-SFN08.pdf},
    timestamp = {2008.12.18} 
    }
    


  7. P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, D. Rivière, C. Poupon, and J.-F. Mangin. Connectivity-based parcellation of the cortical surface using Q-ball imaging. In 5th Proc. IEEE ISBI, Paris, France, pages 903-906, May 2008.
    @inproceedings{Guevara08,
    author = {P. Guevara and M. Perrin and P. Cathier and Y. Cointepas and D. Rivière and C. Poupon and J.-F. Mangin},
    title = {Connectivity-based parcellation of the cortical surface using {Q}-ball imaging},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {903--906},
    address = {Paris, France},
    month = {May},
    pdf = {http://static.lnao.fr/papers/Guevara-ISBI08.pdf} 
    }
    


  8. M. Keller and A. Roche. Increased sensitivity in fMRI group analysis using mixed-effect modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 548-551, May 2008.
    @inproceedings{Keller08b,
    author = {M. Keller and A. Roche},
    title = {Increased sensitivity in f{MRI} group analysis using mixed-effect modeling},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {548--551},
    address = {Paris, France},
    month = {May},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Keller08.pdf} 
    }
    


  9. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Computing strings of average HARDI models using Procrustes-Based Fibre Alignment. In Proc. 16th ISMRM, Toronto, Canada, 2008.
    @inproceedings{Kezele08a,
    author = {I. Kezele and C. Poupon and M. Perrin and Y. Cointepas and El~Kouby, V. and F. Poupon and J.-F. Mangin},
    title = {Computing strings of average {HARDI} models using {Procrustes-Based} Fibre Alignment},
    booktitle = {{P}roc. 16th {{ISMRM}}},
    year = 2008,
    address = {Toronto, Canada} 
    }
    


  10. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Mean Q-ball strings obtained by constrained Procrustes analysis with point sliding. In 11th Proc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008.
    @inproceedings{Kezele08b,
    author = {I. Kezele and C. Poupon and M. Perrin and Y. Cointepas and El~Kouby, V. and F. Poupon and J.-F. Mangin},
    title = {Mean {Q-ball} strings obtained by constrained {Procrustes} analysis with point sliding},
    booktitle = {11th {P}roc. MICCAI, LNCS Springer Verlag},
    year = 2008,
    address = {New-York, USA} 
    }
    


  11. V. Michel, C. Damon, and B. Thirion. Mutual information-based feature selection enhances fMRI brain activity classification. In 5th Proc. IEEE ISBI, Paris, France, pages 592-595, May 2008.
    @inproceedings{Michel08,
    author = {Michel, V. and Damon, C. and B. Thirion},
    title = {Mutual information-based feature selection enhances f{MRI} brain activity classification},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {592--595},
    address = {Paris, France},
    month = {May},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Michel08.pdf} 
    }
    


  12. M. Perrot, D. Rivière, and J.-F. Mangin. Identifying cortical sulci from localizations, shape and local organization. In 5th Proc. IEEE ISBI, Paris, France, pages 420-423, May 2008.
    @inproceedings{Perrot08,
    author = {M. Perrot and D. Rivière and J.-F. Mangin},
    title = {Identifying cortical sulci from localizations, shape and local organization},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {420--423},
    address = {Paris, France},
    month = {May},
    pdf = {http://static.lnao.fr/papers/Perrot-ISBI08.pdf} 
    }
    


  13. F. Poupon, A. Roche, J.-F. Mangin, and C. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In ISMRM, Toronto, Toronto, Canada, 2008.
    @inproceedings{FPoupon08,
    author = {F. Poupon and A. Roche and J.-F. Mangin and C. Poupon},
    title = {Real-time {MR} diffusion tensor and {Q-ball} imaging using {Kalman} filtering},
    booktitle = {ISMRM, Toronto},
    year = 2008,
    address = {Toronto, Canada} 
    }
    


  14. C. Poupon, C. Wiggins, M. Chaumeil, V. Gudmundsdottir, and F. Poupon. Robust and mask free phase unwrapping technique dedicated to B0 and T2* phase imaging. In 16th ISMRM, Toronto, Canada, 2008.
    @inproceedings{Poupon08,
    author = {Poupon, C. and Wiggins, C. and Chaumeil, M. and Gudmundsdottir, V. and Poupon, F.},
    title = {Robust and mask free phase unwrapping technique dedicated to B0 and T2* phase imaging},
    booktitle = { 16th {{ISMRM}}},
    year = 2008,
    address = {Toronto, Canada},
    timestamp = {2009.01.06} 
    }
    


  15. C. Rabrait, P. Ciuciu, A. Ribés, C. Poupon, G. Dehaene-Lambertz, P. Leroux, D. Le Bihan, and F. Lethimonnier. Regularized Localized parallel EVI: application to the study of habituation effects in fMRI. In Proc. 16th ISMRM, Toronto, Canada, May 2008.
    @inproceedings{Rabrait08,
    author = {Rabrait, C. and P. Ciuciu and Ribés, A. and Poupon, C. and Dehaene-Lambertz, G. and Leroux, P. and Le~Bihan, D. and Lethimonnier, F.},
    title = {Regularized Localized parallel {EVI}: application to the study of habituation effects in {fMRI}},
    booktitle = {{P}roc. 16th {{ISMRM}}},
    year = 2008,
    address = {Toronto, Canada},
    month = {May} 
    }
    


  16. L. Risser, P. Ciuciu, Toshihiko Aso, and D. Le Bihan. Brain activation detection using diffusion weighted MRI and BOLD MRI: a comparative study. In MICCAI Workshop on Computational Diffusion MRI, New York, Sep. 2008.
    @inproceedings{Risser08,
    author = {L. Risser and P. Ciuciu and Aso, Toshihiko and Le~Bihan, D.},
    title = {Brain activation detection using diffusion weighted {MRI} and {BOLD MRI}: a comparative study},
    booktitle = {MICCAI Workshop on Computational Diffusion {MRI}},
    year = 2008,
    address = {New York},
    month = {Sep.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Risser08.pdf} 
    }
    


  17. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa.
    @inproceedings{Sun08,
    author = {Z. Y. Sun and D. Rivière and and E. Duchesnay and B. Thirion and F. Poupon and J.-F. Mangin},
    title = {Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {1629--1632},
    address = {Paris, France},
    month = {May},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Sun-ISBI08.pdf} 
    }
    


  18. A. Tucholka, B. Thirion, M. Perrot, P. Pinel, J.-F. Mangin, and J.-B. Poline. Probabilistic anatomo-functional parcellation of the cortex: how many regions?. In 11thProc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. Keyword(s): brainvisa.
    @inproceedings{Tucholka08b,
    author = {A. Tucholka and B. Thirion and M. Perrot and P. Pinel and J.-F. Mangin and J.-B. Poline},
    title = {Probabilistic anatomo-functional parcellation of the cortex: how many regions?},
    booktitle = {11th{P}roc. MICCAI, LNCS Springer Verlag},
    year = 2008,
    address = {New-York, USA},
    keywords = {brainvisa} 
    }
    


  19. A. Tucholka, B. Thirion, P. Pinel, J.-B. Poline, and J.-F. Mangin. Triangulating cortical functional networks with anatomical landmarks. In 5th Proc. IEEE ISBI, Paris, France, pages 612-615, May 2008. Keyword(s): brainvisa.
    @inproceedings{Tucholka08,
    author = {Tucholka, A. and B. Thirion and Pinel, P. and J.-B. Poline and J.-F. Mangin},
    title = {Triangulating cortical functional networks with anatomical landmarks},
    booktitle = {5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {612--615},
    address = {Paris, France},
    month = {May},
    keywords = {brainvisa},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Tucholka08.pdf} 
    }
    


  20. T. Vincent, P. Ciuciu, and B. Thirion. Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in fMRI. In 5th Proc. IEEE ISBI, Paris, France, pages 568-571, May 2008.
    @inproceedings{Vincent08,
    author = {T. Vincent and P. Ciuciu and B. Thirion},
    title = {Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in {fMRI}},
    booktitle = { 5th {{P}roc. {IEEE} {I}SBI}},
    year = 2008,
    pages = {568--571},
    address = {Paris, France},
    month = {May} 
    }
    


Internal reports

  1. P. Ciuciu, Sophie Donnet, Marion Soumoy, and T. Vincent. Bayesian model comparison and selection in fMRI. Research Rep., NeuroSpin/CEA-I2BM, Gif-sur-Yvette, France, July 2008. Keyword(s): fMRI, model selection, MCMC, Bayes factor.
    @techreport{Ciuciu08c,
    author = {P. Ciuciu and Donnet, Sophie and Soumoy, Marion and T. Vincent},
    title = {Bayesian model comparison and selection in fMRI},
    institution = {NeuroSpin/CEA-I2BM},
    year = 2008,
    type = {{R}esearch {R}ep.},
    address = {Gif-sur-Yvette, France},
    month = {July},
    keywords = {f{MRI}, model selection, MCMC, Bayes factor} 
    }
    


Miscellaneous

  1. A.-L. Fouque. Parcellisation du cortex pour l'analyse de l'activité cérébrale en IRMf. Msc thesis, ENS de Cachan, Gif-sur-Yvette, France, Sep. 2008.
    @mastersthesis{Fouque08,
    author = {A.-L. Fouque},
    title = {Parcellisation du cortex pour l'analyse de l'activité cérébrale en {IRMf}},
    school = {{ENS de Cachan}},
    year = 2008,
    type = {{Msc} thesis},
    address = {Gif-sur-Yvette, France},
    month = {Sep.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Fouque08-MSCthesis.pdf} 
    }
    



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