Publications of year 2008


  1. P. Ciuciu. Dynamique cérébrale en neuro-imagerie fonctionnelle. Habilitation thesis, Orsay, France, 2008. Keyword(s): fMRI, EM, MCMC, HRF, wavelets, multifractal, mixture models. [bibtex-entry]

Articles in journal or book chapters

  1. T. Adali, Z.J. Wang, M.J. Mc Keown, P. Ciuciu, L.K. Hansen, A. Cichocki, and V.D. Calhoun. Introduction to the issue on fMRI analysis for human brain mapping. IEEE Journal of Selected Topics in Signal Processing, 2(6):813-816, Dec. 2008. [bibtex-entry]

  2. J. Andoh, E Artiges, C Pallier, D. Rivière, J.-F. Mangin, M. L. Paillère-Martinot, and J.-L. Martinot. Priming frequencies of transcranial magnetic stimulation over Wernicke's area modulate word detection. Cereb. Cortex, 18(1):210-6, 2008. Keyword(s): brainvisa. [bibtex-entry]

  3. Anne Botzung, Ekaterina Denkova, P. Ciuciu, Christian Scheiber, and Lilianne Manning. The neural bases of the constructive nature of autobiographical memories studied with a self-paced fMRI design. Memory, 16(4):351-363, Apr. 2008. Keyword(s): autobiographical memories, fMRI, self-paced, Hemodynamic Response Function. [bibtex-entry]

  4. A. Cachia, M.-L. Paillère-Martinot, A. Galinowski, D. Januel, R. De Beaurepaire, F. Bellivier, E. Artiges, T. Gallarda, J. Andoh, D. Bartrés-Faz, E. Duchesnay, D. Rivière, Y. Cointepas, M. Plaze, J.-F. Mangin, and J.-L. Martinot. Cortical folding abnormalities in schizophrenia patients with resistant auditory hallucinations. Neuroimage, 39(3):927-935, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]

  5. S. Chanraud, M. Reynaud, M. Wessa, J. Penttilä, N. Kostogianni, A. Cachia, E. Artiges, F. Delain, M. Perrin, H-J. Aubin, Y. Cointepas, C. Martelli, and J-L. Martinot. Diffusion tensor tractography in mesencephalic bundles: relation to mental flexibility in detoxified alcohol-dependent subjects. Neuropsychopharmacology, 34(5):1223-1232, 2008. Keyword(s): brainvisa. [bibtex-entry]

  6. G. Chételat, M. Fouquet, G. Kalpouzos, I. Denghien, V. De la Sayette, F. Viader, F. Mézenge, B. Landeau, J. C. Baron, F. Eustache, and B. Desgranges. Three-dimensional surface mapping of hippocampal atrophy progression from MCI to AD and over normal aging as assessed using voxel-based morphometry. Neuropsychologia, 46(6):1721-1731, 2008. [bibtex-entry]

  7. P. Ciuciu, P. Abry, C. Rabrait, and H. Wendt. Log wavelet Leaders cumulant based multifractal analysis of EVI fMRI time series: evidence of scaling in ongoing and evoked brain activity. IEEE Journal of Selected Topics in Signal Processing, 2(6):929-943, Dec. 2008. [bibtex-entry]

  8. M. D. Cykowski, P Kochunov, R. J. Ingham, J. C. Ingham, J.-F. Mangin, D. Rivière, J. L. Lancaster, and P. T. Fox. Perisylvian Sulcal Morphology and Cerebral Asymmetry Patterns in Adults Who Stutter. Cereb. Cortex, 18(3):571-83, 2008. Keyword(s): Sulci, brainvisa. [bibtex-entry]

  9. J. Dubois, M. Benders, C. Borradori-Tolsa, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S. V. Sizonenko, S. K. Warfield, J.-F. Mangin, and P. S. Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development. Brain, 131(8):2028-41, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]

  10. J. Dubois, M. Benders, A. Cachia, F. Lazeyras, R. Ha-Vinh Leuchter, S.V. Sizonenko, C. Borradori-Tolsa, J.-F. Mangin, and P. S. Hüppi. Mapping the early cortical folding process in the preterm newborn brain. Cereb. Cortex, 18(6):1444-54, 2008. Keyword(s): Sulci, Anatomy, brainvisa. [bibtex-entry]

  11. J. Dubois, G. Dehaene-Lambertz, M. Perrin, J.-F. Mangin, Y. Cointepas, E. Duchesnay, D. Le Bihan, and L. Hertz-Pannier. Asynchrony of the early maturation of white matter bundles in healthy infants: quantitative landmarks revealed noninvasively by diffusion tensor imaging. Hum. Brain Mapp., 29(1):14-27, 2008. Keyword(s): brainvisa. [bibtex-entry]

  12. J. Dubois, G. Dehaene-Lambertz, C. Soarès, Y. Cointepas, D. Le Bihan, and L. Hertz-Pannier. Microstructural correlates of infant functional development: example of the visual pathways. J Neurosci., 28(8):1943-8, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]

  13. A. Dubois, A. S. Hérard, G. Flandin, E. Duchesnay, L. Besret, V. Frouin, P. Hantraye, G. Bonvento, and T. Delzescaux. Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation. Neuroimage, 40(2):482-494, 2008. Keyword(s): brainvisa. [bibtex-entry]

  14. S. Epelbaum, P. Pinel, R. Gaillard, C. Delmaire, M. Perrin, S. Dupont, S. Dehaene, and L. Cohen. Pure alexia as a disconnection syndrome: new diffusion imaging evidence for an old concept. Cortex, 44(8):962-74, 2008. Keyword(s): Diffusion, brainvisa, U562, CENIR, UPMC. [bibtex-entry]

  15. E. Jouvent, J.-F. Mangin, R. Porcher, A. Viswanathan, M. O'Sullivan, J.-P. Guichard, M. Dichgans, M.-G. Bousser, and H. Chabriat. Cortical changes in cerebral small vessel diseases: a 3D MRI study of cortical morphology in CADASIL. Brain, 131(8):2201-8, 2008. Keyword(s): brainvisa. [bibtex-entry]

  16. M. Keller, A. Roche, A. Tucholka, and B.Thirion. Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling. Statistica Sinica, 18(4):1357-1374, 2008. [bibtex-entry]

  17. P. Kochunov, P.M. Thompson, T.R. Coyle, J. L. Lancaster, V. Kochunov, D.R. Royall, J.-F. Mangin, D. Rivière, and P. T. Fox. Relationship among neuroimaging indices of cerebral health during normal aging. Hum. Brain Mapp., 29(1):36-45, 2008. Keyword(s): Sulci, Diffusion, brainvisa. [bibtex-entry]

  18. S. Makni, J. Idier, T. Vincent, B. Thirion, G. Dehaene-Lambertz, and P. Ciuciu. A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI. Neuroimage, 41(3):941-969, July 2008. Keyword(s): fMRI. [bibtex-entry]

  19. R. Maroy, R. Boisgard, C. Comtat, V. Frouin, P. Cathier, E. Duchesnay, F. Dollé, P. E.Nielsen, R. Trébossen, and B. Tavitian. Segmentation of rodent whole-body dynamic PET images: an unsupervised method based on voxel dynamics. IEEE Trans Med Imaging, 27(3):342-54, 2008. Keyword(s): brainvisa. [bibtex-entry]

  20. M. O'Sullivan, E. Jouvent, P. G. Saemann, J.-F. Mangin, A. Viswanathan, A. Gschwendtner, L. Bracoud, C. Pachai, H. Chabriat, and M. Dichgans. Measurement of brain atrophy in subcortical vascular disease: a comparison of different approaches and the impact of ischaemic lesions. Neuroimage, 43(2):312-20, 2008. [bibtex-entry]

  21. J. Penttilä, A. Cachia, M.-L. Paillère-Martinot, J.-F. Mangin, L. Burke, R. Corrigall, S. Frangou, and J.-L. Martinot. Global and Temporal Cortical Folding in Patients With Early-Onset Schizophrenia. Journal of the American Academy of Child & Adolescent Psychiatry, 47(10):1125-1133, 2008. Keyword(s): Sulci, Anatomy. [bibtex-entry]

  22. M. Perrin, Y. Cointepas, A. Cachia, C. Poupon, B. Thirion, D. Rivière, P. Cathier, V. El Kouby, A. Constantinesco, D. Le Bihan, and J.-F. Mangin. Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging. Int J Biomed Imaging, 2008. Keyword(s): Diffusion, brainvisa. [bibtex-entry]

  23. C. Poupon, B. Rieul, I. Kezele, M. Perrin, F. Poupon, and J.-F. Mangin. New diffusion phantoms dedicated to the study and validation of HARDI models. Magnetic Resonance in Medicine, 60(6):1276-83, 2008. [bibtex-entry]

  24. C. Poupon, A. Roche, J. Dubois, J.-F. Mangin, and F. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. Medical Image Analysis, 12(5):527-34, 2008. [bibtex-entry]

  25. C. Rabrait, P. Ciuciu, A. Ribès, C. Poupon, P. Leroux, V. Lebon, G. Dehaene-Lambertz, D. Le Bihan, and F. Lethimonnier. High temporal resolution functional MRI using parallel echo volume imaging. Journal of Magnetic Resonance Imaging, 27(4):744-753, Mar. 2008. [bibtex-entry]

Conference articles

  1. G. Auzias, J. A. Glaunès, A. Cachia, P. Cathier, E. Bardinet, O. Colliot, J.-F. Mangin, A. Trouvé, and S. Baillet. Multi-scale diffeomorphic cortical registration under manifold sulcal constraints. In 5th Proc. IEEE ISBI, Paris, France, pages 1127-1130, 2008. [bibtex-entry]

  2. M. Bhattacharjee, A. Pitiot, A. Roche, D. Dormont, and E. Bardinet. Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs using Confidence-Based Block-Matching. In MICCAI (MICCAI'08), LNCS, New York, USA, Sep. 2008. Springer Verlag. [bibtex-entry]

  3. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. Autocalibrated regularized parallel MRI reconstruction in the wavelet domain. In 5th Proc. IEEE ISBI, Paris, France, pages 756-759, May 2008. [bibtex-entry]

  4. P. Ciuciu, T. Vincent, A.-L. Fouque, and A. Roche. Improved fMRI group studies based on spatially varying non-parametric BOLD signal modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 1263-1266, May 2008. [bibtex-entry]

  5. C. Damon, P. Pinel, M. Perrot, V. Michel, E. Duchesnay, J.-B. Poline, and B. Thirion. Discriminating Between Populations of Subjects Based on FMRI Data Using Sparse Features Selection and SRDA Classifier. In MICCAI 2008 Workshop on Analysis of Functional Medical Images, New York, Sept 2008. [bibtex-entry]

  6. A. Dubois, J. Dauguet, N. Souedet, A. S. Hérard, D. Rivière, Y. Cointepas, G. Bonvento, P. Hantraye, and T. Delzescaux. BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the 3D reconstruction of anatomo-functional brain sections in rodents. In 38th annual meeting of the Society for Neuroscience, Washington, 2008. Keyword(s): brainvisa. [bibtex-entry]

  7. P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, D. Rivière, C. Poupon, and J.-F. Mangin. Connectivity-based parcellation of the cortical surface using Q-ball imaging. In 5th Proc. IEEE ISBI, Paris, France, pages 903-906, May 2008. [bibtex-entry]

  8. M. Keller and A. Roche. Increased sensitivity in fMRI group analysis using mixed-effect modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 548-551, May 2008. [bibtex-entry]

  9. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Computing strings of average HARDI models using Procrustes-Based Fibre Alignment. In Proc. 16th ISMRM, Toronto, Canada, 2008. [bibtex-entry]

  10. I. Kezele, C. Poupon, M. Perrin, Y. Cointepas, V. El Kouby, F. Poupon, and J.-F. Mangin. Mean Q-ball strings obtained by constrained Procrustes analysis with point sliding. In 11th Proc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. [bibtex-entry]

  11. V. Michel, C. Damon, and B. Thirion. Mutual information-based feature selection enhances fMRI brain activity classification. In 5th Proc. IEEE ISBI, Paris, France, pages 592-595, May 2008. [bibtex-entry]

  12. M. Perrot, D. Rivière, and J.-F. Mangin. Identifying cortical sulci from localizations, shape and local organization. In 5th Proc. IEEE ISBI, Paris, France, pages 420-423, May 2008. [bibtex-entry]

  13. F. Poupon, A. Roche, J.-F. Mangin, and C. Poupon. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In ISMRM, Toronto, Toronto, Canada, 2008. [bibtex-entry]

  14. C. Poupon, C. Wiggins, M. Chaumeil, V. Gudmundsdottir, and F. Poupon. Robust and mask free phase unwrapping technique dedicated to B0 and T2* phase imaging. In 16th ISMRM, Toronto, Canada, 2008. [bibtex-entry]

  15. C. Rabrait, P. Ciuciu, A. Ribés, C. Poupon, G. Dehaene-Lambertz, P. Leroux, D. Le Bihan, and F. Lethimonnier. Regularized Localized parallel EVI: application to the study of habituation effects in fMRI. In Proc. 16th ISMRM, Toronto, Canada, May 2008. [bibtex-entry]

  16. L. Risser, P. Ciuciu, Toshihiko Aso, and D. Le Bihan. Brain activation detection using diffusion weighted MRI and BOLD MRI: a comparative study. In MICCAI Workshop on Computational Diffusion MRI, New York, Sep. 2008. [bibtex-entry]

  17. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa. [bibtex-entry]

  18. A. Tucholka, B. Thirion, M. Perrot, P. Pinel, J.-F. Mangin, and J.-B. Poline. Probabilistic anatomo-functional parcellation of the cortex: how many regions?. In 11thProc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008. Keyword(s): brainvisa. [bibtex-entry]

  19. A. Tucholka, B. Thirion, P. Pinel, J.-B. Poline, and J.-F. Mangin. Triangulating cortical functional networks with anatomical landmarks. In 5th Proc. IEEE ISBI, Paris, France, pages 612-615, May 2008. Keyword(s): brainvisa. [bibtex-entry]

  20. T. Vincent, P. Ciuciu, and B. Thirion. Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in fMRI. In 5th Proc. IEEE ISBI, Paris, France, pages 568-571, May 2008. [bibtex-entry]

Internal reports

  1. P. Ciuciu, Sophie Donnet, Marion Soumoy, and T. Vincent. Bayesian model comparison and selection in fMRI. Research Rep., NeuroSpin/CEA-I2BM, Gif-sur-Yvette, France, July 2008. Keyword(s): fMRI, model selection, MCMC, Bayes factor. [bibtex-entry]


  1. A.-L. Fouque. Parcellisation du cortex pour l'analyse de l'activité cérébrale en IRMf. Msc thesis, ENS de Cachan, Gif-sur-Yvette, France, Sep. 2008. [bibtex-entry]



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