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Publications of year 2009

Thesis

  1. M. Perrot. Reconnaissance Automatique des Sillons Corticaux. PhD thesis, ENS de Cachan, Cachan , France, Oct. 2009. Keyword(s): Sulci, Computer Science, Anatomy, Registration, Markov Random Field, Circular distributions, Riemannian calculus.
    @phdthesis{Perrot09b,
    author = {M. Perrot},
    title = {Reconnaissance Automatique des Sillons Corticaux},
    school = {ENS de Cachan},
    year = 2009,
    type = {{PhD} thesis},
    address = {Cachan , France},
    month = {Oct.},
    keywords = {Sulci,Computer Science,Anatomy,Registration,Markov Random Field,Circular distributions,Riemannian calculus},
    pdf = {http://static.lnao.fr/papers/Perrot-thesis09.pdf} 
    }
    


Articles in journal or book chapters

  1. J. Andoh, D. Rivière, J-F. Mangin, E. Artiges, Y. Cointepas, M-L. Paillère-Martinot, J-L. Martinot, and A. Cachia. A low-cost MRI-guided method for TMS coil positioning. Brain Stimulation, 2:123-131, 2009. Keyword(s): brainvisa.
    @article{Andoh09,
    author = {J. Andoh and D. Rivière and J-F. Mangin and E. Artiges and Y. Cointepas and M-L. Paillère-Martinot and J-L. Martinot and A. Cachia},
    title = {A low-cost {MRI}-guided method for {TMS} coil positioning},
    journal = {Brain Stimulation},
    year = 2009,
    volume = 2,
    pages = {123--131},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Andoh-BrainStim09.pdf},
    timestamp = {2009.01.06} 
    }
    


  2. T. Aso, S.-I. Urayama, C. Poupon, N. Sawamoto, H. Fukuyama, and D. Le Bihan. An intrinsic diffusion response function for analyzing diffusion functional MRI time series. Neuroimage, 47(4):1487-1495, 2009.
    @article{Aso09,
    author = {T. Aso and S.-I. Urayama and C. Poupon and N. Sawamoto and H. Fukuyama and Le~Bihan, D.},
    title = {An intrinsic diffusion response function for analyzing diffusion functional {MRI} time series},
    journal = {Neuroimage},
    year = 2009,
    volume = 47,
    number = 4,
    pages = {1487--1495},
    timestamp = {2009.01.06} 
    }
    


  3. N. Boulant, J.-F. Mangin, and A. Amadon. Counteracting radio frequency inhomogeneity in the human brain at 7 Tesla using strongly modulating pulses. Magn Reson Med., 61(5):1165-1172, 2009.
    @article{Boulant09,
    author = {N. Boulant and J.-F. Mangin and A. Amadon},
    title = {Counteracting radio frequency inhomogeneity in the human brain at 7 {Tesla} using strongly modulating pulses},
    journal = { Magn Reson Med.},
    year = 2009,
    volume = 61,
    number = 5,
    pages = {1165--1172},
    pdf = {http://static.lnao.fr/papers/Boulant-MRM09.pdf} 
    }
    


  4. D. Bristow, G. Dehaene-Lambertz, J. Mattout, S. Soares, T. Gliga, S. Baillet, and J.-F. Mangin. Hearing faces: How the infant brain matches the face it sees with the speech it hears. Journal of Cognitive Neuroscience, 21(5):905-21, 2009.
    @article{Bristow09,
    author = {D. Bristow and G. Dehaene-Lambertz and J. Mattout and S. Soares and T. Gliga and S. Baillet and J.-F. Mangin},
    title = {Hearing faces: How the infant brain matches the face it sees with the speech it hears},
    journal = {Journal of Cognitive Neuroscience},
    year = 2009,
    volume = 21,
    number = 5,
    pages = {905--21},
    pdf = {http://www.unicog.org/bblab/liens/crossmodalspeech-infant-deffile.pdf} 
    }
    


  5. M. Descoteaux, J. Calder, and R. Deriche. Optimal real-time Q-ball imaging using regularized Kalman filtering with incremental orientation sets. Medical Image Analysis, 13(4):564-79, 2009.
    @article{MDescoteaux09de,
    author = {Descoteaux, M. and Calder, J. and Deriche, R.},
    title = {Optimal real-time Q-ball imaging using regularized Kalman filtering with incremental orientation sets},
    journal = {Medical Image Analysis},
    year = 2009,
    volume = 13,
    number = 4,
    pages = {564--79} 
    }
    


  6. G. Douaud, T. E. Behrens, C. Poupon, Y. Cointepas, S. Jbabdi, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A. C. Bachoud-Lévi, P. Hantraye, and P. Remy. In vivo evidence for the selective subcortical degeneration in Huntington's disease. Neuroimage, 46(4):958-966, 2009. Keyword(s): brainvisa.
    @article{Douaud09,
    author = {G. Douaud and T. E. Behrens and C. Poupon and Y. Cointepas and S. Jbabdi and V. Gaura and N. Golestani and P. Krystkowiak and C. Verny and P. Damier and A. C. Bachoud-Lévi and P. Hantraye and P. Remy},
    title = {In vivo evidence for the selective subcortical degeneration in {Huntington's} disease},
    journal = {Neuroimage},
    year = 2009,
    volume = 46,
    number = 4,
    pages = {958--966},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Douaud-NI09.pdf} 
    }
    


  7. J. Dubois, L. Hertz-Pannier, A. Cachia, J.-F. Mangin, D. Le Bihan, and G. Dehaene-Lambertz. Structural asymmetries in the infant language and sensori-motor networks. Cereb. Cortex, 19(2):414-423, 2009. Keyword(s): Diffusion, brainvisa.
    @article{Dubois09,
    author = {J. Dubois and L. Hertz-Pannier and A. Cachia and J.-F. Mangin and Le~Bihan, D. and G. Dehaene-Lambertz},
    title = {Structural asymmetries in the infant language and sensori-motor networks},
    journal = {{{C}ereb. {C}ortex}},
    year = 2009,
    volume = 19,
    number = 2,
    pages = {414--423},
    keywords = {Diffusion,brainvisa},
    pdf = {http://static.lnao.fr/papers/Dubois-CC08b.pdf} 
    }
    


  8. M. Fouquet, B. Desgranges, B. Landeau, E. Duchesnay, F. Mézenge, V. de la Sayette, F. Viader, J.-C. Baron, F. Eustache, and G. Chételat. Longitudinal brain metabolic changes from amnestic Mild Cognitive Impairment to Alzheimer’s Disease. Brain, 132:2058-2067, 2009.
    @article{Fouquet09,
    author = {M. Fouquet and B. Desgranges and B. Landeau and E. Duchesnay and F. Mézenge and V. de la Sayette and F. Viader and J.-C. Baron and F. Eustache and G. Chételat},
    title = {Longitudinal brain metabolic changes from amnestic Mild Cognitive Impairment to Alzheimer’s Disease},
    journal = {Brain},
    year = 2009,
    volume = 132,
    pages = {2058--2067} 
    }
    


  9. A. Knops, B. Thirion, E. M. Hubbard, V. Michel, and S. Dehaene. Recruitment of an area involved in eye movements during mental arithmetic. Science, 324:1583-5, 2009.
    @article{Knops09,
    author = {A. Knops and B. Thirion and E. M. Hubbard and V. Michel and S. Dehaene},
    title = {Recruitment of an area involved in eye movements during mental arithmetic},
    journal = {Science},
    year = 2009,
    volume = 324,
    pages = {1583--5},
    timestamp = {2009.01.06} 
    }
    


  10. J. Penttilä, A. Cachia, J.-L. Martinot, D. Ringuenet, M. Wessa, J. Houenou, A. Galinowski, F. Bellivier, T. Gallarda, E. Duchesnay, E. Artiges, M. Leboyer, J.-P. Olié, J.-F. Mangin, and M.-L. Paillère-Martinot. Cortical folding difference between patients with early-onset and patients with intermediate-onset bipolar disorder. Bipolar Disorder, 11(4):361-70, 2009. Keyword(s): brainvisa.
    @article{Penttila09,
    author = {J. Penttilä and A. Cachia and J.-L. Martinot and D. Ringuenet and M. Wessa and J. Houenou and A. Galinowski and F. Bellivier and T. Gallarda and E. Duchesnay and E. Artiges and M. Leboyer and J.-P. Olié and J.-F. Mangin and M.-L. Paillère-Martinot},
    title = {Cortical folding difference between patients with early-onset and patients with intermediate-onset bipolar disorder},
    journal = {Bipolar Disorder},
    year = 2009,
    volume = 11,
    number = 4,
    pages = {361--70},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Penttila-BP2009.pdf} 
    }
    


  11. J. Penttilä, M-L Paillère-Martinot, J-L Martinot, D. Ringuenet, A. Galinowski, J. Houenou, F. Bellivier, M. Wessa, E. Artiges, T. Gallarda, P. Bruguière, F. Pinabel, M. Leboyer, J-P Olié, E. Duchesnay, J-F Mangin, and A. Cachia. Cortical folding in patients with bipolar disorder or unipolar depression. J Psychiatry Neurosci., 34(2):127-35, 2009. Keyword(s): brainvisa.
    @article{Penttila09b,
    author = {J. Penttilä and M-L Paillère-Martinot and J-L Martinot and D. Ringuenet and A. Galinowski and J. Houenou and F. Bellivier and M. Wessa and E. Artiges and T. Gallarda and P. Bruguière and F. Pinabel and M. Leboyer and J-P Olié and E. Duchesnay and J-F Mangin and A. Cachia},
    title = {Cortical folding in patients with bipolar disorder or unipolar depression},
    journal = {J Psychiatry Neurosci.},
    year = 2009,
    volume = 34,
    number = 2,
    pages = {127--35},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Penttila-PsychiatryNeurosci09.pdf},
    timestamp = {2009.01.06} 
    }
    


  12. M. Wessa, J. Houenou, M. Leboyer, S. Chanraud, C. Poupon, J.-L. Martinot, and M.-L. Paillère-Martinot. Microstructural white matter changes in euthymic bipolar patients: a whole-brain diffusion tensor imaging study. Bipolar Disord., 11(5):504-514, 2009.
    @article{Wessa09,
    author = {M. Wessa and J. Houenou and M. Leboyer and S. Chanraud and C. Poupon and J.-L. Martinot and M.-L. Paillère-Martinot},
    title = {Microstructural white matter changes in euthymic bipolar patients: a whole-brain diffusion tensor imaging study},
    journal = {Bipolar Disord.},
    year = 2009,
    volume = 11,
    number = 5,
    pages = {504--514},
    timestamp = {2009.01.06} 
    }
    


Conference articles

  1. T. Aso, C. Poupon, S.-I. Urayama, H. Fukuyama, and D. Le Bihan. Evaluation of Diffusion FMRI (DfMRI) with Short Event Related Paradigms. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Aso09b,
    author = {Aso, T. and Poupon, C. and Urayama, S.-I. and Fukuyama, H. and Le Bihan, D.},
    title = {Evaluation of Diffusion FMRI (DfMRI) with Short Event Related Paradigms},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Aso-ISMRM09.pdf} 
    }
    


  2. G. Auzias, J. A. Glaunès, O. Colliot, M. Perrot, J.-F. Mangin, A. Trouvé, and S. Baillet. DISCO: a Coherent Diffeomorphic Framework for Brain Registration under Exhaustive Sulcal Constraints. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009.
    @inproceedings{Auzias09,
    author = {G. Auzias and J. A. Glaunès and O. Colliot and M. Perrot and J.-F. Mangin and A. Trouvé and S. Baillet},
    title = {{DISCO}: a Coherent Diffeomorphic Framework for Brain Registration under Exhaustive Sulcal Constraints},
    booktitle = {MICCAI 2009, LNCS 5762, Springer-Verlag},
    year = 2009 
    }
    


  3. L. Chaari, Amel Benazza-Benyahia, J.-C. Pesquet, and P. Ciuciu. Wavelet based parallel MRI regularization using bivariate sparsity promoting priors. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 1725-1728, Nov. 2009.
    @inproceedings{Chaari09c,
    author = {L. Chaari and Benazza-Benyahia, Amel and Pesquet, J.-C. and P. Ciuciu},
    title = {Wavelet based parallel {MRI} regularization using bivariate sparsity promoting priors},
    booktitle = { 16th {{P}roc. {IEEE} {I}CIP}},
    year = 2009,
    pages = {1725--1728},
    address = {Cairo, Egypt},
    month = {Nov.} 
    }
    


  4. L. Chaari, P. Ciuciu, A. Benazza-Benyahia, and J.-C. Pesquet. Performance of Three Parallel MRI Reconstruction Methods in the Presence of Coil Sensitivity Map Errors. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Chaari09b,
    author = {L. Chaari and P. Ciuciu and Benazza-Benyahia, A. and Pesquet, J.-C.},
    title = {Performance of Three Parallel MRI Reconstruction Methods in the Presence of Coil Sensitivity Map Errors},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Lofti-ISMRM09.pdf} 
    }
    


  5. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. Minimization of a sparsity promoting criterion for the recovery of complex-valued signals. In Remi Gribonval, editor, SPARS'09: Signal Processing with Adaptive Sparse Structured Representation, Saint Malo, France, Apr. 2009. Inria Rennes - Bretagne Atlantique.
    @inproceedings{Chaari09,
    author = {L. Chaari and J.-C. Pesquet and A. Benazza-Benyahia and P. Ciuciu},
    title = {Minimization of a sparsity promoting criterion for the recovery of complex-valued signals},
    editor = {{R}{e}mi {G}ribonval},
    booktitle = {{SPARS'09: Signal Processing with Adaptive Sparse Structured Representation}},
    year = 2009,
    address = {Saint Malo, France},
    month = {Apr.},
    organization = {{I}nria {R}ennes - {B}retagne {A}tlantique },
    pdf = {http://hal.inria.fr/inria-00369590/en/} 
    }
    


  6. P. Ciuciu, S. Sockeel, J. Idier, and T. Vincent. Modélisation de l'habtituation neurovasculaire de l'activité cérébrale en IRM fonctionnelle. In Actes du 22$^{\mathrm{e}}$ colloque GRETSI, Dijon, France, pages -, Sep. 2009.
    @inproceedings{Ciuciu09b,
    author = {P. Ciuciu and Sockeel, S. and J. Idier and T. Vincent},
    title = {Modélisation de l'habtituation neurovasculaire de l'activité cérébrale en {IRM} fonctionnelle},
    booktitle = {{{A}ctes du }22{$^{\mathrm{e}}$ colloque {GRETSI}}},
    year = 2009,
    pages = {-},
    address = {Dijon, France},
    month = {Sep.} 
    }
    


  7. P. Ciuciu, S. Sockeel, T. Vincent, and J. Idier. Modelling the neurovascular habituation effect on fMRI time series. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 433-436, Apr. 2009.
    @inproceedings{Ciuciu09,
    author = {P. Ciuciu and Sockeel, S. and T. Vincent and J. Idier},
    title = {Modelling the neurovascular habituation effect on {fMRI} time series},
    booktitle = { 34th {{P}roc. {IEEE} {I}CASSP}},
    year = 2009,
    pages = {433--436},
    address = {Taipei, Taiwan},
    month = {Apr.} 
    }
    


  8. M. Descoteaux, J. Calder, C. Poupon, F. Poupon, and R. Deriche. Optimal Real-Time Q-Ball Imaging with Incremental Recursive Orientation Sets. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{MDescoteaux09d,
    author = {Descoteaux, M. and Calder, J. and Poupon, C. and Poupon, F. and Deriche, R.},
    title = {Optimal Real-Time Q-Ball Imaging with Incremental Recursive Orientation Sets},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Descoteaux-ISMRM09d.pdf} 
    }
    


  9. M. Descoteaux, K.-H. Cho, Y.-P. Chao, C.-H. Yeh, J.-F. Mangin, C.-P. Lin, and C. Poupon. Diffusion Propagator Imaging (DPI): An Alternative to Diffusion Spectrum Imaging (DSI). In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{MDescoteaux09a,
    author = {Descoteaux, M. and Cho, K.-H. and Chao, Y.-P. and Yeh, C.-H. and Mangin, J.-F. and Lin, C.-P. and Poupon, C.},
    title = {Diffusion Propagator Imaging (DPI): An Alternative to Diffusion Spectrum Imaging (DSI)},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Descoteaux-ISMRM09a.pdf} 
    }
    


  10. M. Descoteaux, R. Deriche, D. Le Bihan, J.-F. Mangin, and C. Poupon. Diffusion Propagator Imaging: Using Laplace's Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 1-13, July 2009. Springer.
    @inproceedings{Descoteaux09,
    author = {M. Descoteaux and R. Deriche and Le~Bihan, D. and J.-F. Mangin and C. Poupon},
    title = {Diffusion Propagator Imaging: Using {Laplace's} Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator},
    booktitle = {{P}roc. 21th {{IPMI}}},
    year = 2009,
    series = {LNCS-5636},
    pages = {1--13},
    address = {Williamsburg, {VA}},
    month = {July},
    publisher = {Springer},
    pdf = {http://static.lnao.fr/papers/Descoteaux-IPMI09.pdf} 
    }
    


  11. M. Descoteaux, J.-F. Mangin, and C. Poupon. Diffusion Propagator Imaging: A Novel Technique for Reconstructing the Diffusion Propagator from Multiple Shell Acquisitions. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{MDescoteaux09b,
    author = {Descoteaux, M. and Mangin, J.-F. and Poupon, C.},
    title = {Diffusion Propagator Imaging: A Novel Technique for Reconstructing the Diffusion Propagator from Multiple Shell Acquisitions},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Descoteaux-ISMRM09b.pdf} 
    }
    


  12. M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, and C. Poupon. NEX or No NEX? a High Angular Resolution Diffusion Imaging Study. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{MDescoteaux09c,
    author = {Descoteaux, M. and Wiest-Daesslé, N. and Prima, S. and Barillot, C. and Deriche, R. and Poupon, C.},
    title = {NEX or No NEX? a High Angular Resolution Diffusion Imaging Study},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Descoteaux-ISMRM09c.pdf} 
    }
    


  13. S. Durrleman, P. Fillard, X. Pennec, A. Trouvé, and N. Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 114-125, July 2009. Springer.
    @inproceedings{Durrleman09,
    author = {S. Durrleman and P. Fillard and X. Pennec and A. Trouvé and N. Ayache},
    title = {A Statistical Model of White Matter Fiber Bundles based on Currents},
    booktitle = {{P}roc. 21th {{IPMI}}},
    year = 2009,
    series = {LNCS-5636},
    pages = {114--125},
    address = {Williamsburg, {VA}},
    month = {July},
    publisher = {Springer},
    pdf = {http://static.lnao.fr/papers/Durrleman-IPMI09.pdf} 
    }
    


  14. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI.
    @conference{Favre09,
    author = {Favre, L. and Fouque, A.-L. and Vincent, T. and Tucholka, A. and Keller, M. and Operto, G. and Thyreau, B. and Clouchoux, C. and Risser, L. and Moreno, A. and Geffroy, D. and Cointepas, Y. and Coulon, O. and Ciuciu, P. and Thirion, B. and Roche, A.},
    title = {A Comprehensive fMRI Processing Toolbox for BrainVISA},
    booktitle = {{{H}um. Brain {M}app.}},
    year = 2009,
    keywords = {brainvisa, fMRI},
    timestamp = {2009.07.10} 
    }
    


  15. P. Fillard, C. Poupon, and J.-F. Mangin. A Novel Global Tractography Framework based on an Adaptive Spin Glass Model. In Proc. 12th MICCAI, 2009.
    @inproceedings{Fillard09b,
    author = {P. Fillard and C. Poupon and J.-F. Mangin},
    title = {A Novel Global Tractography Framework based on an Adaptive Spin Glass Model},
    booktitle = {{P}roc. 12th {{MICCAI}}},
    year = 2009,
    pdf = {http://static.lnao.fr/papers/Fillard-MICCAI09.pdf} 
    }
    


  16. P. Fillard, C. Poupon, and J.-F. Mangin. Free Spin Tracking: A Novel Global Tractography Algorithm. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Fillard09a,
    author = {P. Fillard and C. Poupon and J.-F. Mangin},
    title = {Free Spin Tracking: A Novel Global Tractography Algorithm},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Fillard-ISMRM09.pdf} 
    }
    


  17. A.-L. Fouque, P. Ciuciu, and L. Risser. Multivariate spatial Gaussian mixture modeling for statistical clustering of hemodynamic parameters in functional MRI. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 445-448, Apr. 2009. Keyword(s): brainvisa.
    @inproceedings{Fouque09,
    author = {A.-L. Fouque and P. Ciuciu and L. Risser},
    title = {Multivariate spatial {G}aussian mixture modeling for statistical clustering of hemodynamic parameters in functional {MRI}},
    booktitle = { 34th {{P}roc. {IEEE} {I}CASSP}},
    year = 2009,
    pages = {445--448},
    address = {Taipei, Taiwan},
    month = {Apr.},
    keywords = {brainvisa} 
    }
    


  18. P. Guevara, Y. Cointepas, D. Rivière, C. Poupon, B. Thirion, and J.-F. Mangin. Inference of a fiber bundle atlas using a two-level clustering strategy. In MICCAI 2009 Workshop on Diffusion Modelling, 2009.
    @inproceedings{Guevara09,
    author = {P. Guevara and Y. Cointepas and D. Rivière and C. Poupon and B. Thirion and J.-F. Mangin},
    title = {Inference of a fiber bundle atlas using a two-level clustering strategy},
    booktitle = {MICCAI 2009 Workshop on Diffusion Modelling},
    year = 2009 
    }
    


  19. M. Keller, M. Lavielle, M. Perrot, and A. Roche. Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis. In 12th MICCAI, London, U.K., Sep. 2009.
    @inproceedings{Keller09,
    author = {M. Keller and M. Lavielle and M. Perrot and A. Roche},
    title = {{Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis}},
    booktitle = { 12th {{MICCAI}}},
    year = 2009,
    address = {London, U.K.},
    month = {Sep.} 
    }
    


  20. I. Kezele, C. Poupon, M. Descoteaux, F. Poupon, and J.-F. Mangin. Importance of Multiscale Analysis in HARDI Studies. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Kezele09,
    author = {Kezele, I. and Poupon, C. and Descoteaux, M. and Poupon, F. and Mangin, J.-F.},
    title = {Importance of Multiscale Analysis in HARDI Studies},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Kezele-ISMRM09.pdf} 
    }
    


  21. D. Le Bihan, T. Aso, S.-I. Urayama, C. Poupon, N Sawamoto, K. Aso, and H. Fukuyama. How Vascular Effects Contribute to Heavily Diffusion-Weighted FMRI Signal. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{LeBihan09,
    author = {Le~Bihan, D. and Aso, T. and Urayama, S.-I. and Poupon, C. and Sawamoto, N and Aso, K. and Fukuyama, H.},
    title = {How Vascular Effects Contribute to Heavily Diffusion-Weighted FMRI Signal},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/LeBihan-ISMRM09.pdf} 
    }
    


  22. J. Lefèvre, F. Leroy, S. Khan, J. Dubois, P. S. Hüppi, S. Baillet, and J.-F. Mangin. Identification of Growth Seeds in the Neonate Brain through Surfacic Helmholtz Decomposition. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 252-263, July 2009. Springer.
    @inproceedings{Lefevre09,
    author = {J. Lefèvre and F. Leroy and S. Khan and J. Dubois and P. S. Hüppi and S. Baillet and J.-F. Mangin},
    title = {Identification of Growth Seeds in the Neonate Brain through Surfacic Helmholtz Decomposition},
    booktitle = {{P}roc. 21th {{IPMI}}},
    year = 2009,
    series = {LNCS-5636},
    pages = {252--263},
    address = {Williamsburg, {VA}},
    month = {July},
    publisher = {Springer},
    pdf = {http://static.lnao.fr/papers/Lefevre-IPMI09.pdf} 
    }
    


  23. S. Lehéricy, E. Bardinet, J. Yelnik, F. Poupon, K. Ugurbil, P.-F. Van de Moortele, and C. Poupon. Gradient Echo Versus Spin Echo T2-Weighted Imaging of Deep Brain Structures of the Human Brain at 7 Tesla. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Lehericy09,
    author = {Lehéricy, S. and Bardinet, E. and Yelnik, J. and Poupon, F. and Ugurbil, K. and Van de Moortele, P.-F. and Poupon, C.},
    title = {Gradient Echo Versus Spin Echo T2-Weighted Imaging of Deep Brain Structures of the Human Brain at 7 Tesla},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Lehericy-ISMRM09.pdf} 
    }
    


  24. M. Perrot, D. Rivière, A. Tucholka, and J.-F. Mangin. Joint Bayesian Cortical Sulci Recognition and Spatial Normalization. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 176-187, July 2009. Springer Verlag.
    @inproceedings{Perrot09,
    author = {M. Perrot and D. Rivière and A. Tucholka and J.-F. Mangin},
    title = {{Joint Bayesian Cortical Sulci Recognition and Spatial Normalization}},
    booktitle = {{P}roc. 21th {{IPMI}}},
    year = 2009,
    series = {LNCS-5636},
    pages = {176--187},
    address = {Williamsburg, {VA}},
    month = {July},
    publisher = {Springer Verlag},
    pdf = {http://static.lnao.fr/papers/Perrot-IPMI09.pdf} 
    }
    


  25. F. Poupon, D. Hasboun, L. Marrakchi, E. Bardinet, J.-F. Mangin, I. Kezele, S. Fernandez-Vidal, K. Ugurbil, S. Lehericy, C. Poupon, P.-F. Van de Moortele, and J. Yelnik. Atlas-Based Analysis of Human Brainstem Anatomy as Revealed by Gradient-Echo T2 Weighted MR Imaging at 7T. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Fpoupon09,
    author = {Poupon, F. and Hasboun, D. and Marrakchi, L. and Bardinet, E. and Mangin, J.-F. and Kezele, I. and Fernandez-Vidal, S. and Ugurbil, K. and Lehericy, S. and Poupon, C. and Van de Moortele, P.-F. and Yelnik, J.},
    title = {Atlas-Based Analysis of Human Brainstem Anatomy as Revealed by Gradient-Echo T2 Weighted MR Imaging at 7T},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/FPoupon-ISMRM09.pdf} 
    }
    


  26. C. Poupon, C. Wiggins, M. Descoteaux, T. Feiweier, J.-F. Mangin, and D. Le Bihan. Millimeter Analytical Q-Ball Fiber Density Function for a Better Separation of Fiber Populations at 7T. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Cpoupon09,
    author = {Poupon, C. and Wiggins, C. and Descoteaux, M. and Feiweier, T. and Mangin, J.-F. and Le~Bihan, D.},
    title = {Millimeter Analytical Q-Ball Fiber Density Function for a Better Separation of Fiber Populations at 7T},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Cpoupon-ISMRM09.pdf} 
    }
    


  27. L. Risser, J. Idier, and P. Ciuciu. Bilinear extrapolation scheme For Fast Estimation of 3D Ising Field Partition Function. Application to fMRI Time Course Analysis.. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 833-836, Nov. 2009.
    @inproceedings{Risser09,
    author = {L. Risser and J. Idier and P. Ciuciu},
    title = {Bilinear extrapolation scheme For Fast Estimation of {3D} Ising Field Partition Function. {A}pplication to f{MRI} Time Course Analysis.},
    booktitle = { 16th {{P}roc. {IEEE} {I}CIP}},
    year = 2009,
    pages = {833--836},
    address = {Cairo, Egypt},
    month = {Nov.} 
    }
    


  28. L. Risser, T. Vincent, and P. Ciuciu. Schéma d'extrapolation de fonctions de partition de champs de Potts. Application l'analyse d'images en IRMf. In Actes du 22$^{\mathrm{e}}$ colloque GRETSI, Dijon, France, Sep. 2009.
    @inproceedings{Risser09c,
    author = {L. Risser and T. Vincent and P. Ciuciu},
    title = {Schéma d'extrapolation de fonctions de partition de champs de Potts. Application  l'analyse d'images en {IRMf}},
    booktitle = {{{A}ctes du }22{$^{\mathrm{e}}$ colloque {GRETSI}}},
    year = 2009,
    address = {Dijon, France},
    month = {Sep.} 
    }
    


  29. L. Risser, T. Vincent, P. Ciuciu, and J. Idier. Robust extrapolation scheme for fast estimation of 3D Ising field partition functions. Application to within-subject fMRI data analysis.. In G.-Z. Yang, editor, 12th Proc. MICCAI, LNCS 5761, London, UK, pages 975-983, Sep. 2009. Springer Verlag Berlin Heidelberg.
    @inproceedings{Risser09b,
    author = {L. Risser and T. Vincent and P. Ciuciu and J. Idier},
    title = {Robust extrapolation scheme for fast estimation of {3D Ising} field partition functions. Application to within-subject {fMRI} data analysis.},
    editor = {Yang, G.-Z. },
    booktitle = { 12th {P}roc. {MICCAI}},
    year = 2009,
    series = {LNCS 5761},
    pages = {975--983},
    address = {London, UK},
    month = {Sep.},
    publisher = {Springer Verlag Berlin Heidelberg} 
    }
    


  30. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. BrainVISA: an extensible software environment for sharing multimodal neuroimaging data and processing tools. In Proc. 15th HBM, 2009. Keyword(s): brainvisa.
    @conference{Riviere09,
    author = {Rivière, D. and Geffroy, D. and Denghien, I. and Souedet, N. and Cointepas, Y.},
    title = {{BrainVISA}: an extensible software environment for sharing multimodal neuroimaging data and processing tools},
    booktitle = {{P}roc. 15th {{HBM}}},
    year = 2009,
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Riviere-HBM09.pdf},
    timestamp = {2009.07.10} 
    }
    


  31. P. Roca, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. DWI-based parcellation of the human cortex with a new dimension reduction of the connectivity matrix. In Proc. 15th HBM, 2009. Keyword(s): brainvisa.
    @conference{Roca09b,
    author = {P. Roca and D. Rivière and P. Guevara and C. Poupon and J.-F. Mangin},
    title = {DWI-based parcellation of the human cortex with a new dimension reduction of the connectivity matrix},
    booktitle = {{P}roc. 15th {{HBM}}},
    year = 2009,
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/Roca-HBM09.pdf} 
    }
    


  32. P. Roca, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Tractography-Based Parcellation of the Cortex using a Spatially-Informed Dimension Reduction of the Connectivity Matrix. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009.
    @inproceedings{Roca09,
    author = {P. Roca and D. Rivière and P. Guevara and C. Poupon and J.-F. Mangin},
    title = {Tractography-Based Parcellation of the Cortex using a Spatially-Informed Dimension Reduction of the Connectivity Matrix},
    booktitle = {MICCAI 2009, LNCS 5762, Springer-Verlag},
    year = 2009,
    pdf = {http://static.lnao.fr/papers/Roca-MICCAI09.pdf} 
    }
    


  33. Z. Y. Sun, M. Perrot, A. Tucholka, D. Rivière, and J.-F. Mangin. Constructing a Dictionary of Human Brain Folding Patterns. In MICCAI 2009, Part II, LNCS 5762, Springer-Verlag, pages 117-124, 2009.
    @inproceedings{Sun09,
    author = {Z. Y. Sun and M. Perrot and A. Tucholka and D. Rivière and J.-F. Mangin},
    title = {Constructing a Dictionary of Human Brain Folding Patterns},
    booktitle = {MICCAI 2009, Part II, LNCS 5762, Springer-Verlag},
    year = 2009,
    pages = {117--124},
    pdf = {http://static.lnao.fr/papers/Sun-MICCAI09.pdf} 
    }
    


  34. T. Vincent, L. Risser, P. Ciuciu, and J. Idier. Spatially unsupervised analysis of within-subject fMRI data using multiple extrapolations of 3D Ising field partition functions. In 2009 IEEE international workshop on Machine Learning for Signal Processing, Grenoble, France, Sep. 2009.
    @inproceedings{Vincent09b,
    author = {T. Vincent and L. Risser and P. Ciuciu and J. Idier},
    title = {Spatially unsupervised analysis of within-subject {fMRI} data using multiple extrapolations of {3D Ising} field partition functions},
    booktitle = {{2009 IEEE international workshop on Machine Learning for Signal Processing}},
    year = 2009,
    address = {Grenoble, France},
    month = {Sep.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Vincent09-MLSP.pdf} 
    }
    


  35. T. Vincent, L. Risser, J. Idier, and P. Ciuciu. Spatially adaptive mixture modelling for analysis of fMRI time series. In Proc. 15th HBM, San Francisco, CA, USA, June 2009.
    @inproceedings{Vincent09,
    author = {T. Vincent and L. Risser and J. Idier and P. Ciuciu},
    title = {Spatially adaptive mixture modelling for analysis of {fMRI} time series},
    booktitle = {{P}roc. 15th {{HBM}}},
    year = 2009,
    address = {San Francisco, CA, USA},
    month = {June} 
    }
    


  36. C.-H. Yeh, J.-D. Tournier, K.-H. Cho, C. Poupon, and C.-P. Lin. Evaluation of Angular Uncertainties of Q-Space Diffusion MRI Under Finite Gradient Pulse Widths : A Phantom Study. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009.
    @inproceedings{Yeh09,
    author = {Yeh, C.-H. and Tournier, J.-D. and Cho, K.-H. and Poupon, C. and Lin, C.-P.},
    title = {Evaluation of Angular Uncertainties of Q-Space Diffusion MRI Under Finite Gradient Pulse Widths : A Phantom Study},
    booktitle = {{P}roc. 17th {{ISMRM}}},
    year = 2009,
    address = {Honolulu, Hawaii},
    pdf = {http://static.lnao.fr/papers/Yeh-ISMRM09.pdf} 
    }
    


  37. T.-S. Yo, A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. R. Knösche. Quantifying Brain Connectivity: a comparative tractography study. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009.
    @inproceedings{Yo09,
    author = {T.-S. Yo and A. Anwander and M. Descoteaux and P. Fillard and C. Poupon and T. R. Knösche},
    title = {Quantifying Brain Connectivity: a comparative tractography study},
    booktitle = {MICCAI 2009, LNCS 5762, Springer-Verlag},
    year = 2009 
    }
    


Internal reports

  1. Christine Keribin. Les méthodes bayésiennes variationnelles et leur application en neuroimagerie: une étude de l'existant. Research Rep.7091, INRIA Saclay, Select, Orsay, France, Nov. 2009.
    @techreport{Keribin09,
    author = {Christine Keribin},
    title = {Les méthodes bayésiennes variationnelles et leur application en neuroimagerie: une étude de l'existant},
    institution = {INRIA Saclay, Select},
    year = 2009,
    type = {{R}esearch {R}ep.7091},
    address = {Orsay, France},
    month = {Nov.} 
    }
    



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