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Publications of year 2009

Thesis

  1. M. Perrot. Reconnaissance Automatique des Sillons Corticaux. PhD thesis, ENS de Cachan, Cachan , France, Oct. 2009. Keyword(s): Sulci, Computer Science, Anatomy, Registration, Markov Random Field, Circular distributions, Riemannian calculus. [bibtex-entry]


Articles in journal or book chapters

  1. J. Andoh, D. Rivière, J-F. Mangin, E. Artiges, Y. Cointepas, M-L. Paillère-Martinot, J-L. Martinot, and A. Cachia. A low-cost MRI-guided method for TMS coil positioning. Brain Stimulation, 2:123-131, 2009. Keyword(s): brainvisa. [bibtex-entry]


  2. T. Aso, S.-I. Urayama, C. Poupon, N. Sawamoto, H. Fukuyama, and D. Le Bihan. An intrinsic diffusion response function for analyzing diffusion functional MRI time series. Neuroimage, 47(4):1487-1495, 2009. [bibtex-entry]


  3. N. Boulant, J.-F. Mangin, and A. Amadon. Counteracting radio frequency inhomogeneity in the human brain at 7 Tesla using strongly modulating pulses. Magn Reson Med., 61(5):1165-1172, 2009. [bibtex-entry]


  4. D. Bristow, G. Dehaene-Lambertz, J. Mattout, S. Soares, T. Gliga, S. Baillet, and J.-F. Mangin. Hearing faces: How the infant brain matches the face it sees with the speech it hears. Journal of Cognitive Neuroscience, 21(5):905-21, 2009. [bibtex-entry]


  5. M. Descoteaux, J. Calder, and R. Deriche. Optimal real-time Q-ball imaging using regularized Kalman filtering with incremental orientation sets. Medical Image Analysis, 13(4):564-79, 2009. [bibtex-entry]


  6. G. Douaud, T. E. Behrens, C. Poupon, Y. Cointepas, S. Jbabdi, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A. C. Bachoud-Lévi, P. Hantraye, and P. Remy. In vivo evidence for the selective subcortical degeneration in Huntington's disease. Neuroimage, 46(4):958-966, 2009. Keyword(s): brainvisa. [bibtex-entry]


  7. J. Dubois, L. Hertz-Pannier, A. Cachia, J.-F. Mangin, D. Le Bihan, and G. Dehaene-Lambertz. Structural asymmetries in the infant language and sensori-motor networks. Cereb. Cortex, 19(2):414-423, 2009. Keyword(s): Diffusion, brainvisa. [bibtex-entry]


  8. M. Fouquet, B. Desgranges, B. Landeau, E. Duchesnay, F. Mézenge, V. de la Sayette, F. Viader, J.-C. Baron, F. Eustache, and G. Chételat. Longitudinal brain metabolic changes from amnestic Mild Cognitive Impairment to Alzheimer’s Disease. Brain, 132:2058-2067, 2009. [bibtex-entry]


  9. A. Knops, B. Thirion, E. M. Hubbard, V. Michel, and S. Dehaene. Recruitment of an area involved in eye movements during mental arithmetic. Science, 324:1583-5, 2009. [bibtex-entry]


  10. J. Penttilä, A. Cachia, J.-L. Martinot, D. Ringuenet, M. Wessa, J. Houenou, A. Galinowski, F. Bellivier, T. Gallarda, E. Duchesnay, E. Artiges, M. Leboyer, J.-P. Olié, J.-F. Mangin, and M.-L. Paillère-Martinot. Cortical folding difference between patients with early-onset and patients with intermediate-onset bipolar disorder. Bipolar Disorder, 11(4):361-70, 2009. Keyword(s): brainvisa. [bibtex-entry]


  11. J. Penttilä, M-L Paillère-Martinot, J-L Martinot, D. Ringuenet, A. Galinowski, J. Houenou, F. Bellivier, M. Wessa, E. Artiges, T. Gallarda, P. Bruguière, F. Pinabel, M. Leboyer, J-P Olié, E. Duchesnay, J-F Mangin, and A. Cachia. Cortical folding in patients with bipolar disorder or unipolar depression. J Psychiatry Neurosci., 34(2):127-35, 2009. Keyword(s): brainvisa. [bibtex-entry]


  12. M. Wessa, J. Houenou, M. Leboyer, S. Chanraud, C. Poupon, J.-L. Martinot, and M.-L. Paillère-Martinot. Microstructural white matter changes in euthymic bipolar patients: a whole-brain diffusion tensor imaging study. Bipolar Disord., 11(5):504-514, 2009. [bibtex-entry]


Conference articles

  1. T. Aso, C. Poupon, S.-I. Urayama, H. Fukuyama, and D. Le Bihan. Evaluation of Diffusion FMRI (DfMRI) with Short Event Related Paradigms. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  2. G. Auzias, J. A. Glaunès, O. Colliot, M. Perrot, J.-F. Mangin, A. Trouvé, and S. Baillet. DISCO: a Coherent Diffeomorphic Framework for Brain Registration under Exhaustive Sulcal Constraints. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009. [bibtex-entry]


  3. L. Chaari, Amel Benazza-Benyahia, J.-C. Pesquet, and P. Ciuciu. Wavelet based parallel MRI regularization using bivariate sparsity promoting priors. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 1725-1728, Nov. 2009. [bibtex-entry]


  4. L. Chaari, P. Ciuciu, A. Benazza-Benyahia, and J.-C. Pesquet. Performance of Three Parallel MRI Reconstruction Methods in the Presence of Coil Sensitivity Map Errors. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  5. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. Minimization of a sparsity promoting criterion for the recovery of complex-valued signals. In Remi Gribonval, editor, SPARS'09: Signal Processing with Adaptive Sparse Structured Representation, Saint Malo, France, Apr. 2009. Inria Rennes - Bretagne Atlantique. [bibtex-entry]


  6. P. Ciuciu, S. Sockeel, J. Idier, and T. Vincent. Modélisation de l'habtituation neurovasculaire de l'activité cérébrale en IRM fonctionnelle. In Actes du 22$^{\mathrm{e}}$ colloque GRETSI, Dijon, France, pages -, Sep. 2009. [bibtex-entry]


  7. P. Ciuciu, S. Sockeel, T. Vincent, and J. Idier. Modelling the neurovascular habituation effect on fMRI time series. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 433-436, Apr. 2009. [bibtex-entry]


  8. M. Descoteaux, J. Calder, C. Poupon, F. Poupon, and R. Deriche. Optimal Real-Time Q-Ball Imaging with Incremental Recursive Orientation Sets. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  9. M. Descoteaux, K.-H. Cho, Y.-P. Chao, C.-H. Yeh, J.-F. Mangin, C.-P. Lin, and C. Poupon. Diffusion Propagator Imaging (DPI): An Alternative to Diffusion Spectrum Imaging (DSI). In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  10. M. Descoteaux, R. Deriche, D. Le Bihan, J.-F. Mangin, and C. Poupon. Diffusion Propagator Imaging: Using Laplace's Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 1-13, July 2009. Springer. [bibtex-entry]


  11. M. Descoteaux, J.-F. Mangin, and C. Poupon. Diffusion Propagator Imaging: A Novel Technique for Reconstructing the Diffusion Propagator from Multiple Shell Acquisitions. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  12. M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, and C. Poupon. NEX or No NEX? a High Angular Resolution Diffusion Imaging Study. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  13. S. Durrleman, P. Fillard, X. Pennec, A. Trouvé, and N. Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 114-125, July 2009. Springer. [bibtex-entry]


  14. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI. [bibtex-entry]


  15. P. Fillard, C. Poupon, and J.-F. Mangin. A Novel Global Tractography Framework based on an Adaptive Spin Glass Model. In Proc. 12th MICCAI, 2009. [bibtex-entry]


  16. P. Fillard, C. Poupon, and J.-F. Mangin. Free Spin Tracking: A Novel Global Tractography Algorithm. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  17. A.-L. Fouque, P. Ciuciu, and L. Risser. Multivariate spatial Gaussian mixture modeling for statistical clustering of hemodynamic parameters in functional MRI. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 445-448, Apr. 2009. Keyword(s): brainvisa. [bibtex-entry]


  18. P. Guevara, Y. Cointepas, D. Rivière, C. Poupon, B. Thirion, and J.-F. Mangin. Inference of a fiber bundle atlas using a two-level clustering strategy. In MICCAI 2009 Workshop on Diffusion Modelling, 2009. [bibtex-entry]


  19. M. Keller, M. Lavielle, M. Perrot, and A. Roche. Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis. In 12th MICCAI, London, U.K., Sep. 2009. [bibtex-entry]


  20. I. Kezele, C. Poupon, M. Descoteaux, F. Poupon, and J.-F. Mangin. Importance of Multiscale Analysis in HARDI Studies. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  21. D. Le Bihan, T. Aso, S.-I. Urayama, C. Poupon, N Sawamoto, K. Aso, and H. Fukuyama. How Vascular Effects Contribute to Heavily Diffusion-Weighted FMRI Signal. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  22. J. Lefèvre, F. Leroy, S. Khan, J. Dubois, P. S. Hüppi, S. Baillet, and J.-F. Mangin. Identification of Growth Seeds in the Neonate Brain through Surfacic Helmholtz Decomposition. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 252-263, July 2009. Springer. [bibtex-entry]


  23. S. Lehéricy, E. Bardinet, J. Yelnik, F. Poupon, K. Ugurbil, P.-F. Van de Moortele, and C. Poupon. Gradient Echo Versus Spin Echo T2-Weighted Imaging of Deep Brain Structures of the Human Brain at 7 Tesla. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  24. M. Perrot, D. Rivière, A. Tucholka, and J.-F. Mangin. Joint Bayesian Cortical Sulci Recognition and Spatial Normalization. In Proc. 21th IPMI, LNCS-5636, Williamsburg, VA, pages 176-187, July 2009. Springer Verlag. [bibtex-entry]


  25. F. Poupon, D. Hasboun, L. Marrakchi, E. Bardinet, J.-F. Mangin, I. Kezele, S. Fernandez-Vidal, K. Ugurbil, S. Lehericy, C. Poupon, P.-F. Van de Moortele, and J. Yelnik. Atlas-Based Analysis of Human Brainstem Anatomy as Revealed by Gradient-Echo T2 Weighted MR Imaging at 7T. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  26. C. Poupon, C. Wiggins, M. Descoteaux, T. Feiweier, J.-F. Mangin, and D. Le Bihan. Millimeter Analytical Q-Ball Fiber Density Function for a Better Separation of Fiber Populations at 7T. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  27. L. Risser, J. Idier, and P. Ciuciu. Bilinear extrapolation scheme For Fast Estimation of 3D Ising Field Partition Function. Application to fMRI Time Course Analysis.. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 833-836, Nov. 2009. [bibtex-entry]


  28. L. Risser, T. Vincent, and P. Ciuciu. Schéma d'extrapolation de fonctions de partition de champs de Potts. Application l'analyse d'images en IRMf. In Actes du 22$^{\mathrm{e}}$ colloque GRETSI, Dijon, France, Sep. 2009. [bibtex-entry]


  29. L. Risser, T. Vincent, P. Ciuciu, and J. Idier. Robust extrapolation scheme for fast estimation of 3D Ising field partition functions. Application to within-subject fMRI data analysis.. In G.-Z. Yang, editor, 12th Proc. MICCAI, LNCS 5761, London, UK, pages 975-983, Sep. 2009. Springer Verlag Berlin Heidelberg. [bibtex-entry]


  30. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. BrainVISA: an extensible software environment for sharing multimodal neuroimaging data and processing tools. In Proc. 15th HBM, 2009. Keyword(s): brainvisa. [bibtex-entry]


  31. P. Roca, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. DWI-based parcellation of the human cortex with a new dimension reduction of the connectivity matrix. In Proc. 15th HBM, 2009. Keyword(s): brainvisa. [bibtex-entry]


  32. P. Roca, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Tractography-Based Parcellation of the Cortex using a Spatially-Informed Dimension Reduction of the Connectivity Matrix. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009. [bibtex-entry]


  33. Z. Y. Sun, M. Perrot, A. Tucholka, D. Rivière, and J.-F. Mangin. Constructing a Dictionary of Human Brain Folding Patterns. In MICCAI 2009, Part II, LNCS 5762, Springer-Verlag, pages 117-124, 2009. [bibtex-entry]


  34. T. Vincent, L. Risser, P. Ciuciu, and J. Idier. Spatially unsupervised analysis of within-subject fMRI data using multiple extrapolations of 3D Ising field partition functions. In 2009 IEEE international workshop on Machine Learning for Signal Processing, Grenoble, France, Sep. 2009. [bibtex-entry]


  35. T. Vincent, L. Risser, J. Idier, and P. Ciuciu. Spatially adaptive mixture modelling for analysis of fMRI time series. In Proc. 15th HBM, San Francisco, CA, USA, June 2009. [bibtex-entry]


  36. C.-H. Yeh, J.-D. Tournier, K.-H. Cho, C. Poupon, and C.-P. Lin. Evaluation of Angular Uncertainties of Q-Space Diffusion MRI Under Finite Gradient Pulse Widths : A Phantom Study. In Proc. 17th ISMRM, Honolulu, Hawaii, 2009. [bibtex-entry]


  37. T.-S. Yo, A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. R. Knösche. Quantifying Brain Connectivity: a comparative tractography study. In MICCAI 2009, LNCS 5762, Springer-Verlag, 2009. [bibtex-entry]


Internal reports

  1. Christine Keribin. Les méthodes bayésiennes variationnelles et leur application en neuroimagerie: une étude de l'existant. Research Rep.7091, INRIA Saclay, Select, Orsay, France, Nov. 2009. [bibtex-entry]



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