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Publications of year 2010

Thesis

  1. E. Jouvent. Etude du cortex cérébral dans CADASIL, un modèle de démence vasculaire sous-corticale. PhD thesis, Université Pierre et Marie Curie, Paris , France, Nov. 2010. Keyword(s): Sulci, Segmentation, Anatomy. [bibtex-entry]


Articles in journal or book chapters

  1. L. Chaari, J.-C. Pesquet, J.-Y. Tourneret, P. Ciuciu, and A. Benazza-Benyahia. A Hierarchical Bayesian Model for Frame Representation. IEEE Trans. Signal Processing, 58(11):5560-6671, Nov. 2010. [bibtex-entry]


  2. P. Ciuciu, T. Vincent, L. Risser, and Sophie Donnet. A joint detection-estimation framework for analysing within-subject fMRI data. Journal de la Société Francaise de Statistiques, 151(1):58-89, 2010. [bibtex-entry]


  3. C. Clouchoux, D. Rivière, J.-F. Mangin, G. Operto, J. Régis, and O. Coulon. Model-driven parameterization of the cortical surface for localization and inter-subject matching. Neuroimage, 50(2):552-66, 2010. [bibtex-entry]


  4. M. Descoteaux, R. Deriche, D. Le Bihan, J.-F. Mangin, and C. Poupon. Multiple q-shell diffusion propagator imaging. Medical Image Analysis, 2010. [bibtex-entry]


  5. J. Dubois, M. Benders, F. Lazeyras, C. Borradori-Tolsa, R. H. V. Leuchter, J.-F. Mangin, and P. S. Hüppi. Structural asymmetries of perisylvian regions in the preterm newborn. Neuroimage, 2010. [bibtex-entry]


  6. W. D. Hopkins, O. Coulon, and J.-F. Mangin. Observer-independent characterization of sulcal landmarks and depth asymmetry in the central sulcus of the chimpanzee brain.. Neuroscience, 171(2):544-551, 2010. [bibtex-entry]


  7. K. Im, H. J. Jo, J.-F. Mangin, A. C. Evans, S. I. Kim, and J.-M. Lee. Spatial Distribution of Deep Sulcal Landmarks and Hemispherical Asymmetry on the Cortical Surface. Cerebral Cortex, 20(3):602-611, 2010. [bibtex-entry]


  8. I. Kezele, M. Descoteaux, C. Poupon, F. Poupon, and J.-F. Mangin. Spherical wavelet transform for ODF sharpening. Medical Image Analysis, 14:332-342, 2010. [bibtex-entry]


  9. S. Klöppel, J.-F. Mangin, A. Vongerichten, R. Frackowiak, and H. R. Siebner. Nurture versus nature: long-term impact of forced right-handedness on structure of pericentral cortex and basal ganglia. J Neurosci., 30(9):3271-5, 2010. [bibtex-entry]


  10. P. Kochunov, D. C. Glahn, P. T. Fox, J. L. Lancaster, K. Saleem, W. Shelledy, K. Zilles, P. M. Thompson, O. Coulon, J.-F. Mangin, J. Blangero, and J. Rogers. Genetics of primary cerebral gyrification: Heritability of length, depth and area of primary sulci in an extended pedigree of Papio baboons. Neuroimage, 2010. [bibtex-entry]


  11. J. Lefèvre and J.-F. Mangin. A reaction-diffusion model of the human brain development. PLoS Comput Biol, 6(4):e1000749, 2010. [bibtex-entry]


  12. J.-F. Mangin, E. Jouvent, and A. Cachia. In vivo measurement of cortical morphology: means and meanings. Current Opinion in Neurology, 23(4):359-67, 2010. [bibtex-entry]


  13. M.-L. Paillère Martinot, A. Galinowski, D. Ringuenet, T. Gallarda, J.P. Lefaucheur, F. Bellivier, C. Picq, P. Bruguière, J.-F. Mangin, D. Rivière, J.C. Willer, B. Falissard, M. Leboyer, J.P. Olié, E. Artiges, and J.L. Martinot. Influence of prefrontal target region on the efficacy of repetitive transcranial magnetic stimulation in patients with medication-resistant depression: a [18F]-fluorodeoxyglucose PET and MRI study. Int J Neuropsychopharmacol, 13(1):45-59, 2010. [bibtex-entry]


  14. G. Varoquaux, S. Sadaghiani, P. Pinel, A. Kleinschmidt, J.-B. Poline, and B. Thirion. A group model for stable multi-subject ICA on fMRI datasets. Neuroimage, 51(1):288-299, 2010. [bibtex-entry]


  15. T. Vincent, L. Risser, and P. Ciuciu. Spatially adaptive mixture modeling for analysis of within-subject fMRI time series. IEEE Trans. Med. Imag., 29(4):1059-1074, Apr. 2010. [bibtex-entry]


Conference articles

  1. S. Badillo, S. Desmidt, and P. Ciuciu. A group level fMRI comparative study between 12 and 32 channel coils at 3 Tesla. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  2. S. Badillo, T. Vincent, and P. Ciuciu. Spatially adaptive subject level analyses improve random effects fMRI group studies. In IEEE ISABEL Symposium, Roma, Italia, Nov. 2010. Keyword(s): JDE, HRF, Bayesian, MCMC, parallel MRI, reconstruction, sparsity, RFX, group studies. [bibtex-entry]


  3. L. Chaari, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on brain activity detection in fMRI. In IEEE ISABEL'10 Symposium, Roma, Italia, Nov. 2010. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity. [bibtex-entry]


  4. L. Chaari, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on the statistical sensitivity in fMRI. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity. [bibtex-entry]


  5. L. Chaari, J.-C. Pesquet, Amel Benazza-Benyahia, and P. Ciuciu. A hierarchical Bayesian model for frame representation. In 35th Proc. IEEE ICASSP, Dallas, TX, USA, pages 4086-4089, Mar. 2010. [bibtex-entry]


  6. P. Ciuciu, S. Desmidt, T. Vincent, S. Roger, B. Thirion, and A. Roche. What is the statistical difference between SPM5 and the BrainVISA fMRI toolbox?. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison. [bibtex-entry]


  7. Y. Cointepas, D. Geffroy, N. Souedet, I. Denghien, and D. Rivière. The BrainVISA project: a shared software development infrastructure for biomedical imaging research. In Proc. 16th HBM, 2010. Keyword(s): brainvisa. [bibtex-entry]


  8. J. Dubois, C. Poupon, F. Leroy, G. Santoro, J.-F. Mangin, L. Hertz-Pannier, and G. Dehaene-Lambertz. Quantification of tissues’ maturation in the infant brain with multi-parametric MRI. In Proc. Intl. Soc. Mag. Reson. Med, volume 18, pages 740, 2010. [bibtex-entry]


  9. P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, L. Marrakchi, M. Descoteaux, P. Fillard, B. Thirion, and J.-F. Mangin. Inference of a HARDI fiber bundle atlas using a two-level clustering strategy.. In MICCAI, volume 13, pages 550-557, 2010. [bibtex-entry]


  10. I. Kezele, D. C. Alexander, P. Batchelor, J.-F. Mangin, D. Le Bihan, and C. Poupon. Measuring microstructural features related to neuronal activation using diffusion MRI and three-compartment diffusion models: a feasibility study. In International Society for Magnetic Resonance in Medicine 18th Annual Scientific Meeting and Exhibition: 2010 Proceedings, pages 1580-1580, 2010. International Society for Magnetic Resonance in Medicine. [bibtex-entry]


  11. I. Kezele, P. Batchelor, C. Poupon, J.-F. Mangin, D. Le Bihan, and D. C. Alexander. Feasibility of Measuring Microstructural Features of Systems with Intermediate Exchange and Sub-Cellular Compartmentalization Using Diffusion MRI. In Proc. Intl. Soc. Mag. Reson. Med, volume 18, pages 301, 2010. [bibtex-entry]


  12. J. Lefèvre and J.-F. Mangin. In 7th Proc. IEEE ISBI, Rotterdam, The Netherlands, Apr. 2010. [bibtex-entry]


  13. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Analysis of the striato-thalamo-cortical connectivity on the cortical surface to infer biomarkers of Huntington's disease.. In MICCAI, volume 13, pages 217-224, 2010. [bibtex-entry]


  14. L. Marrakchi-Kacem, C. Poupon, C. Delmaire, A. Durr, J.-F. Mangin, S. Lehericy, and F. Poupon. Pathology-adapted Automatic Deep Nuclei Segmentation : Evaluation of accuracy on Huntington Patients. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  15. L. Marrakchi-Kacem, C. Poupon, E. Jouvent, I. Rekik, J.-F. Mangin, and F. Poupon. Robust Automatic Segmentation of Ventricles : Application to a Genetic Small Vessel Disease, CADASIL. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  16. L. Marrakchi-Kacem, C. Poupon, J.-F. Mangin, and F. Poupon. Multi-contrast deep nuclei segmentation using a probabilistic atlas. In Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on, pages 61-64, 2010. IEEE. [bibtex-entry]


  17. L. Marrakchi-Kacem, F. Poupon, P. Roca, A. Tucholka, C. Delmaire, E. Bardinet, M. Sharman, R. Valabregue, A. Messé, C. Malherbe, and others. Probabilistic atlas of the connections between the basal ganglia and the cortex. In Proceedings of the ISMRM 18th Annual Scientific Meeting and Exhibition, 2010. [bibtex-entry]


  18. L. Marrakchi-Kacem, F. Poupon, A. Tucholka, P. Roca, C. Delmaire, J. Yelnik, E. Bardinet, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Striato-Cortical Probabilistic Connectivity Atlases to infer Biomarkers of Huntington's Disease. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


  19. F. Poupon. Analyse en temps réel des données d'IRM. In 58th JFR, Paris, France, 2010. [bibtex-entry]


  20. C. Poupon, J. Dubois, L. Marrakchi, V. Brion, J.-F. Mangin, and F. Poupon. Real-time EPI T1, T2 and T2* mapping at 3T. In Proceedings of the International Society Magnetic Resonance in Medicine, volume 18, pages 4983, 2010. [bibtex-entry]


  21. I. Rekik, L. Marrakchi-Kacem, J.-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. Automatic Detection of the Anterior and Posterior Commissures from T1-weighted Images. In 18th ISMRM, Stockholm, Sweden, 2010. [bibtex-entry]


  22. L. Risser, T. Vincent, F. Forbes, J. Idier, and P. Ciuciu. How to deal with brain deactivations in the joint detection-estimation framework?. In D Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. [bibtex-entry]


  23. P. Roca, A. Tucholka, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Inter-subject Connectivity-based Parcellation of a Patch of Cerebral Cortex. In MICCAI 2010, LNCS 5762, Springer-Verlag, 2010. Keyword(s): brainvisa. [bibtex-entry]


  24. P. Roca, A. Tucholka, D. Rivière, P. Guevara, C. Poupon, and J.-F. Mangin. Inter-subject Connectivity-based Parcellation of the Human Post-central Gyrus. In Proc. 16th HBM, 2010. Keyword(s): brainvisa. [bibtex-entry]


  25. G. Varoquaux, M. Keller, J.-B. Poline, P. Ciuciu, and B. Thirion. ICA-based sparse features recovery from fMRI datasets. In 7th Proc. IEEE ISBI, Rotterdam, The Netherlands, pages 1177-1180, Apr. 2010. [bibtex-entry]


  26. T. Vincent, A. Tucholka, and P. Ciuciu. Surface-based joint detection-estimation of brain activity in functional MRI. In D. Le Bihan, editor, 16th Proc. HBM, Barcelona, Espania, June 2010. Elsevier. Keyword(s): JDE, HRF, Bayesian, MCMC, cortical surface. [bibtex-entry]


  27. F. poupon, I. Rekik, L. Marrakchi-Kacem, D. Le Bihan, J.-F. Mangin, and C. Poupon. Automatic Detection of the Anterior and Posterior Commissures from T1-weighted Images. In 16th HBM, Barcelona, Spain, 2010. [bibtex-entry]


Internal reports

  1. P. Ciuciu and S. Donnet. Bayesian model comparison and selection in neuroimaging from JDE results. Research Rep., LNAO, NeuroSpin/CEA, Gif-sur-Yvette, France, May 2010. [bibtex-entry]



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