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Publications of year 2011

Thesis

  1. P. Guevara. Inference of a human brain fiber bundle atlas from high angular resolution diffusion imaging. PhD thesis, Université de Paris-Sud, Orsay , France, Oct. 2011. Keyword(s): Diffusion.
    @phdthesis{Guevara11,
    author = {P. Guevara},
    title = {Inference of a human brain fiber bundle atlas from high angular resolution diffusion imaging},
    school = {Université de Paris-Sud},
    year = 2011,
    type = {{PhD} thesis},
    address = {Orsay , France},
    month = {Oct.},
    keywords = {Diffusion},
    pdf = {http://tel.archives-ouvertes.fr/docs/00/63/87/66/PDF/VD2_GUEVARA_PAMELA_05102011.pdf} 
    }
    


  2. L. Marrakchi-Kacem. Connectivité anatomique des noyaux gris centraux : développements méthodologiques et application aux troubles moteurs. PhD thesis, Université de Paris-Sud, Orsay , France, July 2011.
    @phdthesis{Marrakchi-Kacem2011,
    author = {L. Marrakchi-Kacem},
    title = {Connectivité anatomique des noyaux gris centraux : développements méthodologiques et application aux troubles moteurs},
    school = {Université de Paris-Sud},
    year = 2011,
    type = {{PhD} thesis},
    address = {Orsay , France},
    month = {July},
    pdf = {http://tel.archives-ouvertes.fr/docs/00/62/22/67/PDF/VA2_KACEM_LINDA_08072011.pdf} 
    }
    


  3. P. Roca. Parcellisation du manteau cortical partir de la connectivité anatomique cartographiée par imagerie de diffusion. PhD thesis, Université Paris Sud XI, Faculté des Sciences d’Orsay, Orsay , France, Sep. 2011.
    @phdthesis{Roca11,
    author = {P. Roca},
    title = {Parcellisation du manteau cortical  partir de la connectivité anatomique cartographiée par imagerie de diffusion},
    school = {Université Paris Sud XI, Faculté des Sciences d’Orsay},
    year = 2011,
    type = {{PhD} thesis},
    address = {Orsay , France},
    month = {Sep.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/anatomist/documents/roca/these_Pauline_Roca_2011.pdf} 
    }
    


Articles in journal or book chapters

  1. G. Auzias, O. Colliot, J. A. Glaunès, M. Perrot, J.-F. Mangin, A. Trouvé, and S. Baillet. Diffeomorphic Brain Registration Under Exhaustive Sulcal Constraints. IEEE Trans Med Imaging, 30(6):1214-1227, 2011.
    @article{Auzias11,
    author = {G. Auzias and O. Colliot and J. A. Glaunès and M. Perrot and J.-F. Mangin and A. Trouvé and S. Baillet},
    title = {Diffeomorphic Brain Registration Under Exhaustive Sulcal Constraints},
    journal = {IEEE Trans Med Imaging},
    year = 2011,
    volume = 30,
    number = 6,
    pages = {1214--1227} 
    }
    


  2. S. L. Bogart, J.-F. Mangin, S. J. Schapiro, A. Bennett, P. Pierre, and W. D. Hopkins. CORTICAL ASYMMETRIES DETECTED IN SPECIES-SPECIFIC SULCI IN CHIMPANZEES BUT NOT MACAQUES. AMERICAN JOURNAL OF PRIMATOLOGY, 73:103-103, 2011.
    @article{Bogart11,
    author = {S. L. Bogart and J.-F. Mangin and S. J. Schapiro and A. Bennett and P. Pierre and W. D. Hopkins},
    title = {CORTICAL ASYMMETRIES DETECTED IN SPECIES-SPECIFIC SULCI IN CHIMPANZEES BUT NOT MACAQUES},
    journal = {AMERICAN JOURNAL OF PRIMATOLOGY},
    year = 2011,
    volume = 73,
    pages = {103--103},
    publisher = {WILEY-BLACKWELL} 
    }
    


  3. V. Brion, C. Poupon, O. Riff, S. Aja-Fernández, A. Tristán-Vega, J.-F. Mangin, D. Le Bihan, and F. Poupon. Parallel MRI noise correction: an extension of the LMMSE to non central $\chi$ distributions. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, pp 226-233, 2011.
    @article{Brion11,
    author = {V. Brion and C. Poupon and O. Riff and S. Aja-Fernández and A. Tristán-Vega and J.-F. Mangin and D. Le Bihan and F. Poupon},
    title = {Parallel MRI noise correction: an extension of the LMMSE to non central $\chi$ distributions},
    journal = {Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011},
    year = 2011,
    pages = {226--233},
    publisher = {Springer Berlin/Heidelberg} 
    }
    


  4. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. A wavelet-based regularized reconstruction algorithm for SENSE parallel MRI with applications to neuroimaging. Medical Image Analysis, 15(2):185-201, 2011. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity.
    @article{Chaari10c,
    author = {L. Chaari and J.-C. Pesquet and A. Benazza-Benyahia and P. Ciuciu},
    title = {A wavelet-based regularized reconstruction algorithm for {SENSE parallel MRI} with applications to neuroimaging},
    journal = {Medical Image Analysis},
    year = 2011,
    volume = 15,
    number = 2,
    pages = {185--201},
    keywords = {wavelet, parallel MRI, reconstruction, sparsity} 
    }
    


  5. E. Duchesnay, A. Cachia, N. Boddaert, N. Chabane, J.-F. Mangin, J.-L. Martinot, and M. Zilbovicius. Feature selection and classification of imbalanced datasets. Application to PET images of children with Autistic Spectrum Disorders. Neuroimage, 57(3):1003-1014, 2011.
    @article{Duchesnay11,
    author = {E. Duchesnay and A. Cachia and N. Boddaert and N. Chabane and J.-F. Mangin and J.-L. Martinot and M. Zilbovicius},
    title = {Feature selection and classification of imbalanced datasets. Application to {PET} images of children with Autistic Spectrum Disorders},
    journal = {{{N}euroimage}},
    year = 2011,
    volume = 57,
    number = 3,
    pages = {1003--1014} 
    }
    


  6. P. Fillard, M. Descoteaux, A. Goh, S. Gouttard, B. Jeurissen, J. Malcolm, A. Ramirez-Manzanares, M. Reisert, K. Sakaie, F. Tensaouti, T. Yo, J.-F. Mangin, and C. Poupon. Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom. Neuroimage, 56(1):220-34, 2011.
    @article{Fillard11,
    author = {P. Fillard and M. Descoteaux and A. Goh and S. Gouttard and B. Jeurissen and J. Malcolm and A. Ramirez-Manzanares and M. Reisert and K. Sakaie and F. Tensaouti and T. Yo and J.-F. Mangin and C. Poupon},
    title = {Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom},
    journal = {Neuroimage},
    year = 2011,
    volume = 56,
    number = 1,
    pages = {220--34} 
    }
    


  7. M. Fouquet, B. Desgranges, R. La Joie, D. Rivière, B. Landeau, F. Mézenge, V. de La Sayette, F. Viader, J.-F. Mangin, J.-C. Baron, and others. A specific relationship between hippocampal CA1 subfield atrophy and episodic memory encoding in amnestic mild cognitive impairment. Alzheimer's & Dementia, 7(4):S734-S735, 2011.
    @article{Fouquet11,
    author = {M. Fouquet and B. Desgranges and R. La Joie and D. Rivière and B. Landeau and F. Mézenge and V. de La Sayette and F. Viader and J.-F. Mangin and J.-C. Baron and others},
    title = {A specific relationship between hippocampal CA1 subfield atrophy and episodic memory encoding in amnestic mild cognitive impairment},
    journal = {Alzheimer's \& Dementia},
    year = 2011,
    volume = 7,
    number = 4,
    pages = {S734--S735},
    publisher = {Elsevier} 
    }
    


  8. H. Glasel, F. Leroy, J. Dubois, L. Hertz-Pannier, J.-F. Mangin, and G. Dehaene-Lambertz. A robust cerebral asymmetry in the infant brain: The rightward superior temporal sulcus. Neuroimage, 2011.
    @article{Glasel11,
    author = {H. Glasel and F. Leroy and J. Dubois and L. Hertz-Pannier and J.-F. Mangin and G. Dehaene-Lambertz},
    title = {A robust cerebral asymmetry in the infant brain: The rightward superior temporal sulcus},
    journal = {Neuroimage},
    year = 2011 
    }
    


  9. P. Guevara, D. Duclap, C. Poupon, L. Marrakchi-Kacem, J. Houenou, M. Leboyer, and J.-F. Mangin. Segmentation of short association bundles in massive tractography datasets using a multi-subject bundle atlas. Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, pp 701-708, 2011.
    @article{guevara11d,
    author = {P. Guevara and D. Duclap and C. Poupon and L. Marrakchi-Kacem and J. Houenou and M. Leboyer and J.-F. Mangin},
    title = {Segmentation of short association bundles in massive tractography datasets using a multi-subject bundle atlas},
    journal = {Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications},
    year = 2011,
    pages = {701--708},
    publisher = {Springer Berlin Heidelberg} 
    }
    


  10. P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, M. Descoteaux, B. Thirion, and J.-F. Mangin. Robust clustering of massive tractography datasets.. Neuroimage, 54(3):1975-1993, 2011.
    @article{Guevara11b,
    author = {P. Guevara and C. Poupon and D. Rivière and Y. Cointepas and M. Descoteaux and B. Thirion and J.-F. Mangin},
    title = {Robust clustering of massive tractography datasets.},
    journal = {Neuroimage},
    year = 2011,
    volume = 54,
    number = 3,
    pages = {1975--1993},
    url = {http://dx.doi.org/10.1016/j.neuroimage.2010.10.028} 
    }
    


  11. W. D. Hopkins, S. L. Bogart, J.-F. Mangin, and S. Schapiro. NEURAL CORRELATES OF ORO-FACIAL MOTOR CONTROL IN CHIMPANZEES: IMPLICATIONS FOR THE ORIGINS OF SPEECH. AMERICAN JOURNAL OF PRIMATOLOGY, 73:44-44, 2011.
    @article{Hopkins11,
    author = {W. D. Hopkins and S. L. Bogart and J.-F. Mangin and S. Schapiro},
    title = {NEURAL CORRELATES OF ORO-FACIAL MOTOR CONTROL IN CHIMPANZEES: IMPLICATIONS FOR THE ORIGINS OF SPEECH},
    journal = {AMERICAN JOURNAL OF PRIMATOLOGY},
    year = 2011,
    volume = 73,
    pages = {44--44},
    publisher = {WILEY-BLACKWELL} 
    }
    


  12. C. R. Jr Jack, F. Barkhof, M. A. Bernstein, M. Cantillon, P. E. Cole, C. Decarli, B. Dubois, S. Duchesne, N. C. Fox, G. B. Frisoni, H. Hampel, D. L. Hill, K. Johnson, J.-F. Mangin, P. Scheltens, A. J. Schwarz, R. Sperling, J. Suhy, P. M. Thompson, M. Weiner, and N. L. Foster. Steps to standardization and validation of hippocampal volumetry as a biomarker in clinical trials and diagnostic criterion for Alzheimer's disease. Alzheimers Dement., 7(4):474-485, 2011.
    @article{Jack11,
    author = {Jack, C. R. Jr and F. Barkhof and M. A. Bernstein and M. Cantillon and P. E. Cole and C. Decarli and B. Dubois and S. Duchesne and N. C. Fox and G. B. Frisoni and H. Hampel and D. L. Hill and K. Johnson and J.-F. Mangin and P. Scheltens and A. J. Schwarz and R. Sperling and J. Suhy and P. M. Thompson and M. Weiner and N. L. Foster},
    title = {Steps to standardization and validation of hippocampal volumetry as a biomarker in clinical trials and diagnostic criterion for Alzheimer's disease},
    journal = {Alzheimers Dement.},
    year = 2011,
    volume = 7,
    number = 4,
    pages = {474--485} 
    }
    


  13. E. Jouvent, C. Poupon, F. Gray, C. Paquet, J.-F. Mangin, D Le Bihan, and H. Chabriat. Intracortical infarcts in small vessel disease: a combined 7-T postmortem MRI and neuropathological case study in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy. Stroke, 42(3):27-30, 2011.
    @article{Jouvent11b,
    author = {E. Jouvent and C. Poupon and F. Gray and C. Paquet and J.-F. Mangin and Le~Bihan, D, and H. Chabriat},
    title = {Intracortical infarcts in small vessel disease: a combined {7-T} postmortem {MRI} and neuropathological case study in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy},
    journal = {Stroke},
    year = 2011,
    volume = 42,
    number = 3,
    pages = {27--30} 
    }
    


  14. E. Jouvent, S. Reyes S, J.-F. Mangin, P. Roca, M. Perrot, B. Thyreau, D. Hervé, M. Dichgans, and H. Chabriat. Apathy is related to cortex morphology in CADASIL: A sulcal-based morphometry study. Neurology, 76(17):1472-7, 2011.
    @article{Jouvent11a,
    author = {E. Jouvent and S. Reyes S and J.-F. Mangin and P. Roca and M. Perrot and B. Thyreau and D. Hervé and M. Dichgans and H. Chabriat},
    title = {Apathy is related to cortex morphology in CADASIL: A sulcal-based morphometry study},
    journal = {Neurology},
    year = 2011,
    volume = 76,
    number = 17,
    pages = {1472--7} 
    }
    


  15. F. Leroy, H. Glasel, J. Dubois, L. Hertz-Pannier, B. Thirion, J.-F. Mangin, and G. Dehaene-Lambertz. Early maturation of the linguistic dorsal pathway in human infants. J Neurosci, 31(4):1500-6, 2011.
    @article{Leroy11,
    author = {F. Leroy and H. Glasel and J. Dubois and L. Hertz-Pannier and B. Thirion and J.-F. Mangin and G. Dehaene-Lambertz},
    title = {Early maturation of the linguistic dorsal pathway in human infants},
    journal = {J Neurosci},
    year = 2011,
    volume = 31,
    number = 4,
    pages = {1500--6} 
    }
    


  16. F. Leroy, J.-F. Mangin, F. Rousseau, H. Glasel, L. Hertz-Pannier, J. Dubois, and G. Dehaene-Lambertz. Atlas-free surface reconstruction of the cortical grey-white interface in infants. PLoS One, 6(11):e27128, 2011. Keyword(s): brainvisa, lnao.
    @article{Leroy11b,
    author = {F. Leroy and J.-F. Mangin and F. Rousseau and H. Glasel and L. Hertz-Pannier and J. Dubois and G. Dehaene-Lambertz},
    title = {Atlas-free surface reconstruction of the cortical grey-white interface in infants},
    journal = {PLoS One},
    year = 2011,
    volume = 6,
    number = 11,
    pages = {e27128},
    keywords = {brainvisa, lnao} 
    }
    


  17. A. Meguerditchian, S. L. Bogart, C. Cantalupo, T. M. Nir, O. Coulon, J.-F. Mangin, and W. D. Hopkins. THE SOUND OF ONE HAND CLAPPING IN THE CHIMPANZEES BRAIN (PAN TROGLODYTES): NEUROCORRELATES OF ASYMMETRIES FOR AUDITORY GESTURES IN THE MOTOR HAND AND HOMOLOGOUS LANGUAGE AREAS. AMERICAN JOURNAL OF PRIMATOLOGY, 73:74-74, 2011.
    @article{meguerditchian11,
    author = {A. Meguerditchian and S. L. Bogart and C. Cantalupo and T. M. Nir and O. Coulon and J.-F. Mangin and W. D. Hopkins},
    title = {THE SOUND OF ONE HAND CLAPPING IN THE CHIMPANZEES BRAIN (PAN TROGLODYTES): NEUROCORRELATES OF ASYMMETRIES FOR AUDITORY GESTURES IN THE MOTOR HAND AND HOMOLOGOUS LANGUAGE AREAS},
    journal = {AMERICAN JOURNAL OF PRIMATOLOGY},
    year = 2011,
    volume = 73,
    pages = {74--74},
    publisher = {WILEY-BLACKWELL} 
    }
    


  18. M. Perrot, D. Rivière, and J.-F. Mangin. Cortical sulci recognition and spatial normalization. Medical Image Analysis, 15(4):529-550, 2011. Keyword(s): sulci, SPAM, brainvisa.
    @article{Perrot11,
    author = {M. Perrot and D. Rivière and J.-F. Mangin},
    title = {Cortical sulci recognition and spatial normalization},
    journal = {Medical Image Analysis},
    year = 2011,
    volume = 15,
    number = 4,
    pages = {529--550},
    keywords = {sulci, SPAM, brainvisa},
    pdf = {http://static.lnao.fr/papers/perrot_matthieu_media2011_preprint.pdf} 
    }
    


  19. M. Plaze, M.-L. Paillère-Martinot, J. Penttilä, D. Januel, Renaud de Beaurepaire, F. Bellivier, J. Andoh, A. Galinowski, T. Gallarda, E. Artiges, J.-P. Olié, J.-F. Mangin, J.-L. Martinot, and A. Cachia. Where do auditory hallucinations come from?--a brain morphometry study of schizophrenia patients with inner or outer space hallucinations.. Schizophr Bull, 37(1):212-221, 2011.
    @article{Plaze11,
    author = {M. Plaze and M.-L. Paillère-Martinot and J. Penttilä and D. Januel and de Beaurepaire, Renaud and Bellivier, F. and Andoh, J. and Galinowski, A. and Gallarda, T. and Artiges, E. and Olié, J.-P. and Mangin, J.-F. and Martinot, J.-L. and Cachia, A.},
    title = {"Where do auditory hallucinations come from?"--a brain morphometry study of schizophrenia patients with inner or outer space hallucinations.},
    journal = {Schizophr Bull},
    year = 2011,
    volume = 37,
    number = 1,
    pages = {212--221},
    pdf = {http://static.lnao.fr/papers/Plaze-SchizoBull09.pdf} 
    }
    


  20. L. Risser, T. Vincent, F. Forbes, J. Idier, and P. Ciuciu. Min-max extrapolation scheme for fast estimation of 3D Potts field partition functions. Application to the joint detection-estimation of brain activity in fMRI.. J. Sig. Proc. Syst., 65(3):325-338, Dec. 2011.
    @article{Risser10,
    author = {L. Risser and T. Vincent and F. Forbes and J. Idier and P. Ciuciu},
    title = {{Min-max} extrapolation scheme for fast estimation of {3D Potts} field partition functions. Application to the joint detection-estimation of brain activity in {fMRI}.},
    journal = {{{J}. {S}ig. {P}roc. {S}yst.}},
    year = 2011,
    month = {Dec.},
    volume = 65,
    number = 3,
    pages = {325--338} 
    }
    


  21. J. Régis, M. Tamura, M. Park, A. McGonigal, D. Rivière, O. Coulon, F. Bartolomei, N. Girard, D. Figarella-Branger, P. Chauvel, and J.-F. Mangin. Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with MRI–negative frontal lobe epilepsy. Neurosurgery, 69(1):80-94, 2011. Keyword(s): Sulci, brainvisa.
    @article{Regis11,
    author = {J. Régis and M. Tamura and M. Park and A. McGonigal and D. Rivière and O. Coulon and F. Bartolomei and N. Girard and D. Figarella-Branger and P. Chauvel and J.-F. Mangin},
    title = {Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with {MRI–negative} frontal lobe epilepsy},
    journal = {Neurosurgery},
    year = 2011,
    volume = 69,
    number = 1,
    pages = {80--94},
    keywords = {Sulci, brainvisa} 
    }
    


  22. A. Sarrazin, B. Etain, F. E. Vederine, M. A d'Albis, N. Hamdani, C. Daban, M. Delavest, J. P. Lépine, M. Leboyer, J.-F. Mangin, C. Poupon, and J. Houenou. MRI exploration of pineal volume in bipolar disorder. J Affect Disord., 135(1-3):377-9, 2011.
    @article{Sarrazin11,
    author = {A. Sarrazin and B. Etain and F. E. Vederine and d'Albis, M. A and N. Hamdani and C. Daban and M. Delavest and J. P. Lépine and M. Leboyer and J.-F. Mangin and C. Poupon and J. Houenou},
    title = {{MRI} exploration of pineal volume in bipolar disorder},
    journal = {J Affect Disord.},
    year = 2011,
    volume = 135,
    number = {1-3},
    pages = {377--9} 
    }
    


Conference articles

  1. M. Audette, D. Rivière, M. Ewend, A. Enquobahrie, and S. Valette. Approach-guided controlled resolution brain meshing for fe-based interactive neurosurgery simulation. In Workshop on Mesh Processing in Medical Image Analysis, in conjunction with MICCAI 2011, pages 176-186, 2011.
    @inproceedings{Audette11,
    author = {M. Audette and D. Rivière and M. Ewend and A. Enquobahrie and S. Valette},
    title = {Approach-guided controlled resolution brain meshing for fe-based interactive neurosurgery simulation},
    booktitle = {Workshop on Mesh Processing in Medical Image Analysis, in conjunction with MICCAI 2011},
    year = 2011,
    pages = {176--186} 
    }
    


  2. M. Audette, D. Rivière, C. Law, L. Ibanez, S. R. Aylward, J. Finet, X. Wu, and M. G. Ewend. Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software. In SPIE Medical Imaging, pages 79642J-79642J, 2011. International Society for Optics and Photonics.
    @inproceedings{Audette11b,
    author = {M. Audette and D. Rivière and C. Law and L. Ibanez and S. R. Aylward and J. Finet and X. Wu and M. G. Ewend},
    title = {Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software},
    booktitle = {SPIE Medical Imaging},
    year = 2011,
    pages = {79642J--79642J},
    organization = {International Society for Optics and Photonics} 
    }
    


  3. G. Auzias, J. Lefèvre, A. Le Troter, C. Fischer, M. Perrot, J. Régis, and O. Coulon. Model-driven harmonic parameterization of the cortical surface. In Proc. MICCAI, volume 14, pages 310-317, 2011. Keyword(s): brainvisa.
    @inproceedings{Auzias11b,
    author = {G. Auzias and J. Lefèvre and A. Le Troter and C. Fischer and M. Perrot and J. Régis and O. Coulon},
    title = {Model-driven harmonic parameterization of the cortical surface},
    booktitle = {{P}roc. {{MICCAI}}},
    year = 2011,
    volume = 14,
    pages = {310--317},
    keywords = {brainvisa} 
    }
    


  4. S. Badillo, T. Vincent, and P. Ciuciu. Impact of the joint detection-estimation approach on random effects group studies in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 376-380, Apr. 2011.
    @inproceedings{Badillo11,
    author = {S. Badillo and T. Vincent and P. Ciuciu},
    title = {Impact of the joint detection-estimation approach on random effects group studies in {fMRI}},
    booktitle = { 8th {{P}roc. {IEEE} {I}SBI}},
    year = 2011,
    pages = {376--380},
    address = {Chicago, {IL}},
    month = {Apr.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Badillo11.pdf} 
    }
    


  5. V. Brion, I. Kezele, O. Riff, M. Descoteaux, J.-F. Mangin, C. Poupon, and F. Poupon. Real-time Rician noise correction applied to real-time HARDI and HYDI. In Workshop CDMRI of MICCAI, pages 2-13, 2011.
    @inproceedings{Brion11b,
    author = {V. Brion and I. Kezele and O. Riff and M. Descoteaux and J.-F. Mangin and C. Poupon and F. Poupon},
    title = {Real-time Rician noise correction applied to real-time HARDI and HYDI},
    booktitle = {Workshop CDMRI of MICCAI},
    year = 2011,
    pages = {2--13} 
    }
    


  6. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in fMRI. In Journées de la Société Française de Statistiques, Tunis, Tunisie, May 2011.
    @inproceedings{Chaari11d,
    author = {L. Chaari and F. Forbes and P. Ciuciu and T. Vincent and M. Dojat},
    title = {A {V}ariational {B}ayesian approach for the {J}oint {D}etection {E}stimation of Brain Activity in {fMRI}},
    booktitle = {{Journées de la Société Française de Statistiques}},
    year = 2011,
    address = {Tunis, Tunisie},
    month = {May} 
    }
    


  7. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in functional MRI. In In 43eme Journées de la Société Française de Statistiques, Tunis, Tunisie, May 2011.
    @inproceedings{Chaari11f,
    author = { Chaari, L. and Forbes, F. and P. Ciuciu and Vincent, T. and Dojat, M.},
    title = {{A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in functional MRI}},
    booktitle = {In 43eme Journées de la Société Française de Statistiques},
    year = 2011,
    address = {Tunis, Tunisie},
    month = {May},
    x-international-audience = {no} 
    }
    


  8. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. Bayesian variational approximation for the joint Detection-Estimation of brain activity in fMRI. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011.
    @inproceedings{Chaari11b,
    author = {L. Chaari and F. Forbes and P. Ciuciu and T. Vincent and M. Dojat},
    title = {{Bayesian} variational approximation for the joint Detection-Estimation of brain activity in {fMRI}},
    booktitle = {{IEEE Workshop on Statistical Signal Processing (SSP 2011)}},
    year = 2011,
    address = {Nice, France},
    month = {June} 
    }
    


  9. L. Chaari, F. Forbes, T. Vincent, M. Dojat, and P. Ciuciu. Variational Solution to the Joint Detection Estimation of Brain Activity in fMRI. In 14th Proc. MICCAI, LNCS 6892 (Part II), Toronto, Canada, pages 260-268, Sep. 2011. Springer Verlag Berlin Heidelberg.
    @inproceedings{Chaari11e,
    author = {L. Chaari and F. Forbes and T. Vincent and M. Dojat and P. Ciuciu},
    title = {Variational Solution to the Joint Detection Estimation of Brain Activity in {fMRI}},
    booktitle = { 14th {P}roc. {MICCAI}},
    year = 2011,
    series = {LNCS 6892 (Part II)},
    pages = {260--268},
    address = {Toronto, Canada},
    month = {Sep.},
    publisher = {Springer Verlag Berlin Heidelberg} 
    }
    


  10. L. Chaari, S. Mériaux, S. Badillo, P. Ciuciu, and J.-C. Pesquet. 3D wavelet-based regularization for parallel MRI reconstruction: impact on subject and group-level statistical sensitivity in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 460-464, Apr. 2011.
    @inproceedings{Chaari11,
    author = {L. Chaari and S. Mériaux and S. Badillo and P. Ciuciu and Pesquet, J.-C.},
    title = {{3D} wavelet-based regularization for parallel {MRI} reconstruction: impact on subject and group-level statistical sensitivity in {fMRI}},
    booktitle = { 8th {{P}roc. {IEEE} {I}SBI}},
    year = 2011,
    pages = {460--464},
    address = {Chicago, {IL}},
    month = {Apr.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Chaari11.pdf} 
    }
    


  11. L. Chaari, J.-C. Pesquet, J.-Y. Tourneret, and P. Ciuciu. Parameter estimation for hybrid wavelet Total Variation regularization. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011.
    @inproceedings{Chaari11c,
    author = {L. Chaari and J.-C. Pesquet and Tourneret, J.-Y. and P. Ciuciu},
    title = {Parameter estimation for hybrid wavelet {Total Variation} regularization},
    booktitle = {{IEEE Workshop on Statistical Signal Processing (SSP 2011)}},
    year = 2011,
    address = {Nice, France},
    month = {June} 
    }
    


  12. P. Ciuciu, G. Varoquaux, P. Abry, and M. Almog. Multifractal analysis of resting state networks in functional MRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 473-478, Apr. 2011.
    @inproceedings{Ciuciu11,
    author = {P. Ciuciu and Varoquaux, G. and Abry, P. and Almog, M.},
    title = {Multifractal analysis of resting state networks in functional {MRI}},
    booktitle = { 8th {{P}roc. {IEEE} {I}SBI}},
    year = 2011,
    pages = {473--478},
    address = {Chicago, {IL}},
    month = {Apr.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Ciuciu11.pdf} 
    }
    


  13. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa.
    @conference{Geffroy11,
    author = {D. Geffroy and D. Rivière and I. Denghien and N. Souedet and S. Laguitton and Y. Cointepas},
    title = {BrainVISA: a complete software platform for neuroimaging},
    booktitle = {Python in Neuroscience workshop},
    year = 2011,
    address = {Paris},
    month = {Aug.},
    keywords = {brainvisa},
    pdf = {http://static.lnao.fr/papers/brainvisa_python_neuroscience.pdf} 
    }
    


  14. P. Guevara, D. Duclap, L. Marrakchi-Kacem, D. Rivière, Y. Cointepas, C. Poupon, and F.-F. Mangin. Accurate tractography propagation mask using T1-weighted data rather than FA. In Proc. Intl. Soc. Mag. Reson. Med, volume 19, pages 2011, 2011.
    @inproceedings{guevara11c,
    author = {P. Guevara and D. Duclap and L. Marrakchi-Kacem and D. Rivière and Y. Cointepas and C. Poupon and F.-F. Mangin},
    title = {Accurate tractography propagation mask using T1-weighted data rather than FA},
    booktitle = {Proc. Intl. Soc. Mag. Reson. Med},
    year = 2011,
    volume = 19,
    pages = 2011 
    }
    


  15. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa.
    @conference{Laguitton11a,
    author = {S. Laguitton and D. Rivière and D. Geffroy and N. Souedet and Y. Cointepas},
    title = {Soma-Workflow: open source software for easy access to parallel computing resources},
    booktitle = {{P}roc. 17th {{HBM}}},
    year = 2011,
    keywords = {parallel computing, brainvisa},
    pdf = {ftp://ftp.cea.fr/pub/dsv/anatomist/papers/soma-workflow/poster_HBM_2011_somaworkflow.pdf} 
    }
    


  16. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): parallel computing, brainvisa.
    @inproceedings{Laguitton11c,
    author = {S. Laguitton and D. Rivière and T. Vincent and C. Fischer and D. Geffroy and N. Souedet and I. Denghien and Y. Cointepas},
    title = {Soma-workflow: a unified and simple interface to parallel computing resources},
    booktitle = {Python in Neuroscience workshop},
    year = 2011,
    address = {Paris},
    month = {Aug.},
    keywords = {parallel computing, brainvisa},
    pdf = {ftp://ftp.cea.fr/pub/dsv/anatomist/papers/soma-workflow/python_neuroscience_soma_workflow.pdf} 
    }
    


  17. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, Toronto, Sep. 2011. Keyword(s): parallel computing, brainvisa.
    @inproceedings{Laguitton11b,
    author = {S. Laguitton and D. Rivière and T. Vincent and C. Fischer and D. Geffroy and N. Souedet and I. Denghien and Y. Cointepas},
    title = {Soma-workflow: a unified and simple interface to parallel computing resources},
    booktitle = {{MICCAI} {W}orkshop on {H}igh {P}erformance and {D}istributed {C}omputing for {M}edical {I}maging},
    year = 2011,
    address = {Toronto},
    month = {Sep.},
    keywords = {parallel computing, brainvisa},
    pdf = {ftp://ftp.cea.fr/pub/dsv/anatomist/papers/soma-workflow/MICCAI_2011_soma_workflow.pdf} 
    }
    


  18. A. Marin, C. Chaux, J.-C. Pesquet, and P. Ciuciu. Image reconstruction from multiple sensors using Stein’s principle. Application to parallel MRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 465-468, Apr. 2011.
    @inproceedings{Marin11,
    author = {Marin, A. and Chaux, C. and Pesquet, J.-C. and P. Ciuciu},
    title = {Image reconstruction from multiple sensors using {Stein’s} principle. {A}pplication to parallel {MRI}},
    booktitle = { 8th {{P}roc. {IEEE} {I}SBI}},
    year = 2011,
    pages = {465--468},
    address = {Chicago, {IL}},
    month = {Apr.},
    pdf = {ftp://ftp.cea.fr/pub/dsv/madic/publis/Marin11.pdf} 
    }
    


  19. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Distribution of the functional atrophy in the striatum territory of Huntington's patients.. In 19th ISMRM, Montréal, Canada, 2011.
    @inproceedings{Marrakchi11,
    author = {L. Marrakchi-{K}acem and C. Delmaire and A. Tucholka and P. Roca and P. Guevara and S. Lecomte and F. Poupon and J. Yelnik and A. Durr and {J.-F.} Mangin and S. Lehericy and C. Poupon},
    title = {Distribution of the functional atrophy in the striatum territory of {H}untington's patients.},
    booktitle = {19th ISMRM},
    year = 2011,
    address = {Montréal, Canada} 
    }
    


  20. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Using surface connectivity atlases to measure striato-cortical disconnection rate in Huntington disease.. In 19th ISMRM, Montréal, Canada, 2011.
    @inproceedings{Marrakchi11b,
    author = {L. Marrakchi-{K}acem and C. Delmaire and A. Tucholka and P. Roca and P. Guevara and S. Lecomte and F. Poupon and J. Yelnik and A. Durr and {J.-F.} Mangin and S. Lehericy and C. Poupon},
    title = {Using surface connectivity atlases to measure striato-cortical "disconnection rate" in Huntington disease.},
    booktitle = {19th ISMRM},
    year = 2011,
    address = {Montréal, Canada} 
    }
    


  21. D. Rivière, B. Bernhardt, H. Kim, S.-J. Hong, M. Perrot, J.-F. Mangin, J. Régis, N. Bernasconi, and A. Bernasconi. Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies. In Proc. 17th HBM, 2011. Keyword(s): brainvisa, Sulci, Anatomy.
    @conference{Riviere11a,
    author = {D. Rivière and B. Bernhardt and H. Kim and S.-J. Hong and M. Perrot and J.-F. Mangin and J. Régis and N. Bernasconi and A. Bernasconi},
    title = {Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies},
    booktitle = {{P}roc. 17th {{HBM}}},
    year = 2011,
    keywords = {brainvisa, Sulci, Anatomy},
    pdf = {http://static.lnao.fr/papers/riviere-hbm11.pdf} 
    }
    


  22. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. Anatomist: a python framework for interactive 3D visualization of neuroimaging data. In Python in Neuroscience workshop, 2011. Keyword(s): brainvisa.
    @conference{Riviere11b,
    author = {D. Rivière and D. Geffroy and I. Denghien and N. Souedet and Y. Cointepas},
    title = {Anatomist: a python framework for interactive 3D visualization of neuroimaging data},
    booktitle = {Python in Neuroscience workshop},
    year = 2011,
    keywords = {brainvisa},
    pdf = {ftp://ftp.cea.fr/pub/dsv/anatomist/papers/anatomist_euroscipy_neuro.pdf} 
    }
    


  23. G. Varoquaux, A. Gramfort, F. Pedregosa, V. Michel, and B. Thirion. Multi-subject dictionary learning to segment an atlas of brain spontaneous activity. In Proc. 22th IPMI, LNCS-, Monastery IrseeGermany, pages -, July 2011. Springer Verlag.
    @inproceedings{Varoquaux11,
    author = {Varoquaux, G. and Gramfort, A. and Pedregosa, F. and Michel, V. and B. Thirion},
    title = {Multi-subject dictionary learning to segment an atlas of brain spontaneous activity},
    booktitle = {{P}roc. 22th {{IPMI}}},
    year = 2011,
    series = {LNCS-},
    pages = {--},
    address = {Monastery IrseeGermany},
    month = {July},
    publisher = {Springer Verlag} 
    }
    



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