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Publications of year 2011

Thesis

  1. P. Guevara. Inference of a human brain fiber bundle atlas from high angular resolution diffusion imaging. PhD thesis, Université de Paris-Sud, Orsay , France, Oct. 2011. Keyword(s): Diffusion. [bibtex-entry]


  2. L. Marrakchi-Kacem. Connectivité anatomique des noyaux gris centraux : développements méthodologiques et application aux troubles moteurs. PhD thesis, Université de Paris-Sud, Orsay , France, July 2011. [bibtex-entry]


  3. P. Roca. Parcellisation du manteau cortical partir de la connectivité anatomique cartographiée par imagerie de diffusion. PhD thesis, Université Paris Sud XI, Faculté des Sciences d’Orsay, Orsay , France, Sep. 2011. [bibtex-entry]


Articles in journal or book chapters

  1. G. Auzias, O. Colliot, J. A. Glaunès, M. Perrot, J.-F. Mangin, A. Trouvé, and S. Baillet. Diffeomorphic Brain Registration Under Exhaustive Sulcal Constraints. IEEE Trans Med Imaging, 30(6):1214-1227, 2011. [bibtex-entry]


  2. S. L. Bogart, J.-F. Mangin, S. J. Schapiro, A. Bennett, P. Pierre, and W. D. Hopkins. CORTICAL ASYMMETRIES DETECTED IN SPECIES-SPECIFIC SULCI IN CHIMPANZEES BUT NOT MACAQUES. AMERICAN JOURNAL OF PRIMATOLOGY, 73:103-103, 2011. [bibtex-entry]


  3. V. Brion, C. Poupon, O. Riff, S. Aja-Fernández, A. Tristán-Vega, J.-F. Mangin, D. Le Bihan, and F. Poupon. Parallel MRI noise correction: an extension of the LMMSE to non central $\chi$ distributions. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, pp 226-233, 2011. [bibtex-entry]


  4. L. Chaari, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. A wavelet-based regularized reconstruction algorithm for SENSE parallel MRI with applications to neuroimaging. Medical Image Analysis, 15(2):185-201, 2011. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity. [bibtex-entry]


  5. E. Duchesnay, A. Cachia, N. Boddaert, N. Chabane, J.-F. Mangin, J.-L. Martinot, and M. Zilbovicius. Feature selection and classification of imbalanced datasets. Application to PET images of children with Autistic Spectrum Disorders. Neuroimage, 57(3):1003-1014, 2011. [bibtex-entry]


  6. P. Fillard, M. Descoteaux, A. Goh, S. Gouttard, B. Jeurissen, J. Malcolm, A. Ramirez-Manzanares, M. Reisert, K. Sakaie, F. Tensaouti, T. Yo, J.-F. Mangin, and C. Poupon. Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom. Neuroimage, 56(1):220-34, 2011. [bibtex-entry]


  7. M. Fouquet, B. Desgranges, R. La Joie, D. Rivière, B. Landeau, F. Mézenge, V. de La Sayette, F. Viader, J.-F. Mangin, J.-C. Baron, and others. A specific relationship between hippocampal CA1 subfield atrophy and episodic memory encoding in amnestic mild cognitive impairment. Alzheimer's & Dementia, 7(4):S734-S735, 2011. [bibtex-entry]


  8. H. Glasel, F. Leroy, J. Dubois, L. Hertz-Pannier, J.-F. Mangin, and G. Dehaene-Lambertz. A robust cerebral asymmetry in the infant brain: The rightward superior temporal sulcus. Neuroimage, 2011. [bibtex-entry]


  9. P. Guevara, D. Duclap, C. Poupon, L. Marrakchi-Kacem, J. Houenou, M. Leboyer, and J.-F. Mangin. Segmentation of short association bundles in massive tractography datasets using a multi-subject bundle atlas. Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, pp 701-708, 2011. [bibtex-entry]


  10. P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, M. Descoteaux, B. Thirion, and J.-F. Mangin. Robust clustering of massive tractography datasets.. Neuroimage, 54(3):1975-1993, 2011. [bibtex-entry]


  11. W. D. Hopkins, S. L. Bogart, J.-F. Mangin, and S. Schapiro. NEURAL CORRELATES OF ORO-FACIAL MOTOR CONTROL IN CHIMPANZEES: IMPLICATIONS FOR THE ORIGINS OF SPEECH. AMERICAN JOURNAL OF PRIMATOLOGY, 73:44-44, 2011. [bibtex-entry]


  12. C. R. Jr Jack, F. Barkhof, M. A. Bernstein, M. Cantillon, P. E. Cole, C. Decarli, B. Dubois, S. Duchesne, N. C. Fox, G. B. Frisoni, H. Hampel, D. L. Hill, K. Johnson, J.-F. Mangin, P. Scheltens, A. J. Schwarz, R. Sperling, J. Suhy, P. M. Thompson, M. Weiner, and N. L. Foster. Steps to standardization and validation of hippocampal volumetry as a biomarker in clinical trials and diagnostic criterion for Alzheimer's disease. Alzheimers Dement., 7(4):474-485, 2011. [bibtex-entry]


  13. E. Jouvent, C. Poupon, F. Gray, C. Paquet, J.-F. Mangin, D Le Bihan, and H. Chabriat. Intracortical infarcts in small vessel disease: a combined 7-T postmortem MRI and neuropathological case study in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy. Stroke, 42(3):27-30, 2011. [bibtex-entry]


  14. E. Jouvent, S. Reyes S, J.-F. Mangin, P. Roca, M. Perrot, B. Thyreau, D. Hervé, M. Dichgans, and H. Chabriat. Apathy is related to cortex morphology in CADASIL: A sulcal-based morphometry study. Neurology, 76(17):1472-7, 2011. [bibtex-entry]


  15. F. Leroy, H. Glasel, J. Dubois, L. Hertz-Pannier, B. Thirion, J.-F. Mangin, and G. Dehaene-Lambertz. Early maturation of the linguistic dorsal pathway in human infants. J Neurosci, 31(4):1500-6, 2011. [bibtex-entry]


  16. F. Leroy, J.-F. Mangin, F. Rousseau, H. Glasel, L. Hertz-Pannier, J. Dubois, and G. Dehaene-Lambertz. Atlas-free surface reconstruction of the cortical grey-white interface in infants. PLoS One, 6(11):e27128, 2011. Keyword(s): brainvisa, lnao. [bibtex-entry]


  17. A. Meguerditchian, S. L. Bogart, C. Cantalupo, T. M. Nir, O. Coulon, J.-F. Mangin, and W. D. Hopkins. THE SOUND OF ONE HAND CLAPPING IN THE CHIMPANZEES BRAIN (PAN TROGLODYTES): NEUROCORRELATES OF ASYMMETRIES FOR AUDITORY GESTURES IN THE MOTOR HAND AND HOMOLOGOUS LANGUAGE AREAS. AMERICAN JOURNAL OF PRIMATOLOGY, 73:74-74, 2011. [bibtex-entry]


  18. M. Perrot, D. Rivière, and J.-F. Mangin. Cortical sulci recognition and spatial normalization. Medical Image Analysis, 15(4):529-550, 2011. Keyword(s): sulci, SPAM, brainvisa. [bibtex-entry]


  19. M. Plaze, M.-L. Paillère-Martinot, J. Penttilä, D. Januel, Renaud de Beaurepaire, F. Bellivier, J. Andoh, A. Galinowski, T. Gallarda, E. Artiges, J.-P. Olié, J.-F. Mangin, J.-L. Martinot, and A. Cachia. Where do auditory hallucinations come from?--a brain morphometry study of schizophrenia patients with inner or outer space hallucinations.. Schizophr Bull, 37(1):212-221, 2011. [bibtex-entry]


  20. L. Risser, T. Vincent, F. Forbes, J. Idier, and P. Ciuciu. Min-max extrapolation scheme for fast estimation of 3D Potts field partition functions. Application to the joint detection-estimation of brain activity in fMRI.. J. Sig. Proc. Syst., 65(3):325-338, Dec. 2011. [bibtex-entry]


  21. J. Régis, M. Tamura, M. Park, A. McGonigal, D. Rivière, O. Coulon, F. Bartolomei, N. Girard, D. Figarella-Branger, P. Chauvel, and J.-F. Mangin. Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with MRI–negative frontal lobe epilepsy. Neurosurgery, 69(1):80-94, 2011. Keyword(s): Sulci, brainvisa. [bibtex-entry]


  22. A. Sarrazin, B. Etain, F. E. Vederine, M. A d'Albis, N. Hamdani, C. Daban, M. Delavest, J. P. Lépine, M. Leboyer, J.-F. Mangin, C. Poupon, and J. Houenou. MRI exploration of pineal volume in bipolar disorder. J Affect Disord., 135(1-3):377-9, 2011. [bibtex-entry]


Conference articles

  1. M. Audette, D. Rivière, M. Ewend, A. Enquobahrie, and S. Valette. Approach-guided controlled resolution brain meshing for fe-based interactive neurosurgery simulation. In Workshop on Mesh Processing in Medical Image Analysis, in conjunction with MICCAI 2011, pages 176-186, 2011. [bibtex-entry]


  2. M. Audette, D. Rivière, C. Law, L. Ibanez, S. R. Aylward, J. Finet, X. Wu, and M. G. Ewend. Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software. In SPIE Medical Imaging, pages 79642J-79642J, 2011. International Society for Optics and Photonics. [bibtex-entry]


  3. G. Auzias, J. Lefèvre, A. Le Troter, C. Fischer, M. Perrot, J. Régis, and O. Coulon. Model-driven harmonic parameterization of the cortical surface. In Proc. MICCAI, volume 14, pages 310-317, 2011. Keyword(s): brainvisa. [bibtex-entry]


  4. S. Badillo, T. Vincent, and P. Ciuciu. Impact of the joint detection-estimation approach on random effects group studies in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 376-380, Apr. 2011. [bibtex-entry]


  5. V. Brion, I. Kezele, O. Riff, M. Descoteaux, J.-F. Mangin, C. Poupon, and F. Poupon. Real-time Rician noise correction applied to real-time HARDI and HYDI. In Workshop CDMRI of MICCAI, pages 2-13, 2011. [bibtex-entry]


  6. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in fMRI. In Journées de la Société Française de Statistiques, Tunis, Tunisie, May 2011. [bibtex-entry]


  7. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in functional MRI. In In 43eme Journées de la Société Française de Statistiques, Tunis, Tunisie, May 2011. [bibtex-entry]


  8. L. Chaari, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. Bayesian variational approximation for the joint Detection-Estimation of brain activity in fMRI. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. [bibtex-entry]


  9. L. Chaari, F. Forbes, T. Vincent, M. Dojat, and P. Ciuciu. Variational Solution to the Joint Detection Estimation of Brain Activity in fMRI. In 14th Proc. MICCAI, LNCS 6892 (Part II), Toronto, Canada, pages 260-268, Sep. 2011. Springer Verlag Berlin Heidelberg. [bibtex-entry]


  10. L. Chaari, S. Mériaux, S. Badillo, P. Ciuciu, and J.-C. Pesquet. 3D wavelet-based regularization for parallel MRI reconstruction: impact on subject and group-level statistical sensitivity in fMRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 460-464, Apr. 2011. [bibtex-entry]


  11. L. Chaari, J.-C. Pesquet, J.-Y. Tourneret, and P. Ciuciu. Parameter estimation for hybrid wavelet Total Variation regularization. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. [bibtex-entry]


  12. P. Ciuciu, G. Varoquaux, P. Abry, and M. Almog. Multifractal analysis of resting state networks in functional MRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 473-478, Apr. 2011. [bibtex-entry]


  13. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa. [bibtex-entry]


  14. P. Guevara, D. Duclap, L. Marrakchi-Kacem, D. Rivière, Y. Cointepas, C. Poupon, and F.-F. Mangin. Accurate tractography propagation mask using T1-weighted data rather than FA. In Proc. Intl. Soc. Mag. Reson. Med, volume 19, pages 2011, 2011. [bibtex-entry]


  15. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  16. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  17. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, Toronto, Sep. 2011. Keyword(s): parallel computing, brainvisa. [bibtex-entry]


  18. A. Marin, C. Chaux, J.-C. Pesquet, and P. Ciuciu. Image reconstruction from multiple sensors using Stein’s principle. Application to parallel MRI. In 8th Proc. IEEE ISBI, Chicago, IL, pages 465-468, Apr. 2011. [bibtex-entry]


  19. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Distribution of the functional atrophy in the striatum territory of Huntington's patients.. In 19th ISMRM, Montréal, Canada, 2011. [bibtex-entry]


  20. L. Marrakchi-Kacem, C. Delmaire, A. Tucholka, P. Roca, P. Guevara, S. Lecomte, F. Poupon, J. Yelnik, A. Durr, J.-F. Mangin, S. Lehericy, and C. Poupon. Using surface connectivity atlases to measure striato-cortical disconnection rate in Huntington disease.. In 19th ISMRM, Montréal, Canada, 2011. [bibtex-entry]


  21. D. Rivière, B. Bernhardt, H. Kim, S.-J. Hong, M. Perrot, J.-F. Mangin, J. Régis, N. Bernasconi, and A. Bernasconi. Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies. In Proc. 17th HBM, 2011. Keyword(s): brainvisa, Sulci, Anatomy. [bibtex-entry]


  22. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. Anatomist: a python framework for interactive 3D visualization of neuroimaging data. In Python in Neuroscience workshop, 2011. Keyword(s): brainvisa. [bibtex-entry]


  23. G. Varoquaux, A. Gramfort, F. Pedregosa, V. Michel, and B. Thirion. Multi-subject dictionary learning to segment an atlas of brain spontaneous activity. In Proc. 22th IPMI, LNCS-, Monastery IrseeGermany, pages -, July 2011. Springer Verlag. [bibtex-entry]



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