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Publications of year 2013

Articles in journal or book chapters

  1. G. Auzias, J. Lefèvre, A. Le Troter, C. Fischer, M. Perrot, J. Régis, and O. Coulon. Model-driven harmonic parameterization of the cortical surface: HIP-HOP. Medical Imaging, IEEE Transactions on, 32(5):873-887, 2013.
    @article{Auzias13,
    author = {G. Auzias and J. Lefèvre and A. Le Troter and C. Fischer and M. Perrot and J. Régis and O. Coulon},
    title = {Model-driven harmonic parameterization of the cortical surface: HIP-HOP},
    journal = {Medical Imaging, IEEE Transactions on},
    year = 2013,
    volume = 32,
    number = 5,
    pages = {873--887},
    publisher = {IEEE} 
    }
    


  2. S. Badillo, T. Vincent, and P. Ciuciu. Group-level impacts of within- and between-subject hemodynamic variability in fMRI. Neuroimage, 82:433-448, 2013.
    @article{Boddaert05c,
    author = {S. Badillo and T. Vincent and P. Ciuciu},
    title = {Group-level impacts of within- and between-subject hemodynamic variability in fMRI},
    journal = {{{N}euroimage}},
    year = 2013,
    volume = 82,
    pages = {433--448},
    doi = {http://dx.doi.org/10.1016/j.neuroimage.2013.05.100} 
    }
    


  3. S. Badillo, T. Vincent, and P. Ciuciu. Group-level impacts of within- and between-subject hemodynamic variability in fMRI. Neuroimage, 82:433-448, 15 Nov. 2013.
    @article{Badillo13b,
    author = {S. Badillo and T. Vincent and P. Ciuciu},
    title = {Group-level impacts of within- and between-subject hemodynamic variability in {fMRI}},
    journal = {{{N}euroimage}},
    year = 2013,
    month = {15 Nov.},
    volume = 82,
    pages = {433--448} 
    }
    


  4. V. Brion, C. Poupon, O. Riff, S. Aja-Fernández, A. Tristán-Vega, J.-F. Mangin, D. Le Bihan, and F. Poupon. Noise correction for HARDI and HYDI data obtained with multi-channel coils and Sum of Squares reconstruction: An anisotropic extension of the LMMSE. Magnetic resonance imaging, 31(8):1360-1371, 2013.
    @article{Brion13,
    author = {V. Brion and C. Poupon and O. Riff and S. Aja-Fernández and A. Tristán-Vega and J.-F. Mangin and D. Le Bihan and F. Poupon},
    title = {Noise correction for HARDI and HYDI data obtained with multi-channel coils and Sum of Squares reconstruction: An anisotropic extension of the LMMSE},
    journal = {Magnetic resonance imaging},
    year = 2013,
    volume = 31,
    number = 8,
    pages = {1360--1371},
    publisher = {Elsevier} 
    }
    


  5. L. Chaari, T. Vincent, F. Forbes, M. Dojat, and P. Ciuciu. Fast joint detection-estimation of evoked brain activity in event-related fMRI using a variational approach. IEEE Trans. Med. Imag., 32(5):821-837, May 2013.
    @article{Chaari13,
    author = {L. Chaari and T. Vincent and F. Forbes and M. Dojat and P. Ciuciu},
    title = {Fast joint detection-estimation of evoked brain activity in event-related {fMRI} using a variational approach},
    journal = {{{IEEE} {T}rans. {M}ed. {I}mag.}},
    year = 2013,
    month = {May},
    volume = 32,
    number = 5,
    pages = {821--837} 
    }
    


  6. L. Edward, G. Operto, S. Poret, Y. Cointepas, N. Cheaib, L. Makkaoui, and B. Batrancourt. OntoCATI: Towards an ontology of neuroimaging measures in the CATI Platform. Informatics 2013, pp 283, 2013.
    @article{Edward13,
    author = {L. Edward and G. Operto and S. Poret and Y. Cointepas and N. Cheaib and L. Makkaoui and B. Batrancourt},
    title = {OntoCATI: Towards an ontology of neuroimaging measures in the CATI Platform},
    journal = {Informatics 2013},
    year = 2013,
    pages = 283,
    publisher = {Citeseer} 
    }
    


  7. J. Lefevre, V. Intwali, L. Hertz-Pannier, P. S. Hüppi, J.-F. Mangin, J. Dubois, and D. Germanaud. Surface smoothing: a way back in early brain morphogenesis. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2013, pp 590-597, 2013.
    @article{Lefevre13,
    author = {J. Lefevre and V. Intwali and L. Hertz-Pannier and P. S. Hüppi and J.-F. Mangin and J. Dubois and D. Germanaud},
    title = {Surface smoothing: a way back in early brain morphogenesis},
    journal = {Medical Image Computing and Computer-Assisted Intervention--MICCAI 2013},
    year = 2013,
    pages = {590--597},
    publisher = {Springer Berlin Heidelberg} 
    }
    


  8. J.-F. Mangin, P. Fillard, Y. Cointepas, D. Le Bihan, V. Frouin, and C. Poupon. Toward global tractography. NeuroImage, 80:290-296, 2013.
    @article{Mangin13,
    author = {J.-F. Mangin and P. Fillard and Y. Cointepas and D. Le Bihan and V. Frouin and C. Poupon},
    title = {Toward global tractography},
    journal = {NeuroImage},
    year = 2013,
    volume = 80,
    pages = {290--296},
    publisher = {Academic Press} 
    }
    


  9. L. Marrakchi-Kacem, C. Delmaire, P. Guevara, F. Poupon, S. Lecomte, A. Tucholka, P. Roca, J. Yelnik, A. Durr, J.-F. Mangin, and others. Mapping cortico-striatal connectivity onto the cortical surface: a new tractography-based approach to study Huntington disease. PloS one, 8(2):e53135, 2013.
    @article{Marrakchi13,
    author = {L. Marrakchi-Kacem and C. Delmaire and P. Guevara and F. Poupon and S. Lecomte and A. Tucholka and P. Roca and J. Yelnik and A. Durr and J.-F. Mangin and others},
    title = {Mapping cortico-striatal connectivity onto the cortical surface: a new tractography-based approach to study Huntington disease},
    journal = {PloS one},
    year = 2013,
    volume = 8,
    number = 2,
    pages = {e53135},
    publisher = {Public Library of Science} 
    }
    


  10. A. Schwarz, B. Pinsard, V. Perlbarg, Y. Lu, L. Marais, D. Hill, and J.-F. Mangin. Task-free fMRI in clinical trials: Selection of covariates and numeric endpoints. Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 9(4):P588, 2013.
    @article{schwarz13b,
    author = {A. Schwarz and B. Pinsard and V. Perlbarg and Y. Lu and L. Marais and D. Hill and J.-F. Mangin},
    title = {Task-free fMRI in clinical trials: Selection of covariates and numeric endpoints},
    journal = {Alzheimer's \& Dementia: The Journal of the Alzheimer's Association},
    year = 2013,
    volume = 9,
    number = 4,
    pages = {P588},
    publisher = {Elsevier} 
    }
    


  11. A. Schwarz, C. Longo dos Santos, D. Duclap, C. Poupon, L. Marais, D. Hill, and J.-F. Mangin. Automatic diffusion-based fractional anisotropy measurements weighted by fiber density. Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 9(4):P97, 2013.
    @article{Schwarz13,
    author = {A. Schwarz and C. Longo dos Santos and D. Duclap and C. Poupon and L. Marais and D. Hill and J.-F. Mangin},
    title = {Automatic diffusion-based fractional anisotropy measurements weighted by fiber density},
    journal = {Alzheimer's \& Dementia: The Journal of the Alzheimer's Association},
    year = 2013,
    volume = 9,
    number = 4,
    pages = {P97},
    publisher = {Elsevier} 
    }
    


  12. G. Spulber, A. Redolfi, L.-O. Wahlund, K. Cover, C. Finocchiaro, R. McClatchey, D. Manset, J.-F. Mangin, P. Giannakopoulos, A. Toga, and others. N4U: a web-based gateway to neuroimaging research. European Psychiatry, 28:1, 2013.
    @article{Spulber13,
    author = {G. Spulber and A. Redolfi and L.-O. Wahlund and K. Cover and C. Finocchiaro and R. McClatchey and D. Manset and J.-F. Mangin and P. Giannakopoulos and A. Toga and others},
    title = {N4U: a web-based gateway to neuroimaging research},
    journal = {European Psychiatry},
    year = 2013,
    volume = 28,
    pages = 1,
    publisher = {Elsevier Masson} 
    }
    


  13. M. Tamura, M. Hayashi, Y. Konishi, N. Tamura, J. Regis, J.-F. Mangin, T. Taira, Y. Okada, Y. Muragaki, and H. Iseki. Advanced image coregistration within the Leksell workstation for the planning of glioma surgery: initial experience. Journal of neurological surgery reports, 74(2):118, 2013.
    @article{Tamura13,
    author = {M. Tamura and M. Hayashi and Y. Konishi and N. Tamura and J. Regis and J.-F. Mangin and T. Taira and Y. Okada and Y. Muragaki and H. Iseki},
    title = {Advanced image coregistration within the Leksell workstation for the planning of glioma surgery: initial experience},
    journal = {Journal of neurological surgery reports},
    year = 2013,
    volume = 74,
    number = 2,
    pages = 118,
    publisher = {Thieme Medical Publishers} 
    }
    


  14. M. Tamura, Y. Konishi, N. Tamura, M. Hayashi, N. Nakao, Y. Uematsu, T. Itakura, J. Régis, J.-F. Mangin, Y. Muragaki, and others. Usefulness of Leksell GammaPlan for preoperative planning of brain tumor resection: Delineation of the cranial nerves and fusion of the neuroimaging data, including diffusion tensor imaging. Gamma Knife Neurosurgery in the Management of Intracranial Disorders, pp 179-185, 2013.
    @article{Tamura13b,
    author = {M. Tamura and Y. Konishi and N. Tamura and M. Hayashi and N. Nakao and Y. Uematsu and T. Itakura and J. Régis and J.-F. Mangin and Y. Muragaki and others},
    title = {Usefulness of Leksell GammaPlan for preoperative planning of brain tumor resection: Delineation of the cranial nerves and fusion of the neuroimaging data, including diffusion tensor imaging},
    journal = {Gamma Knife Neurosurgery in the Management of Intracranial Disorders},
    year = 2013,
    pages = {179--185},
    publisher = {Springer Vienna} 
    }
    


  15. M. Tamura, T. Maruyama, Y. Konishi, M. Hayashi, J. Régis, J.-F. Mangin, T. Taira, Y. Okada, Y. Muragaki, and H. Iseki. The Impact of Image Co-registration within Leksell Workstation For Glioma Surgery Management. STEREOTACTIC AND FUNCTIONAL NEUROSURGERY, 91:308-308, 2013.
    @article{Tamura13c,
    author = {M. Tamura and T. Maruyama and Y. Konishi and M. Hayashi and J. Régis and J.-F. Mangin and T. Taira and Y. Okada and Y. Muragaki and H. Iseki},
    title = {The Impact of Image Co-registration within Leksell Workstation For Glioma Surgery Management},
    journal = {STEREOTACTIC AND FUNCTIONAL NEUROSURGERY},
    year = 2013,
    volume = 91,
    pages = {308--308},
    publisher = {KARGER} 
    }
    


Conference articles

  1. S. Badillo, G. Varoquaux, and P. Ciuciu. Hemodynamic estimation based on consensus clustering. In IEEE Pattern Recognition in Neuroimaging (PRNI), Philadelphia, USA, June 2013.
    @inproceedings{Badillo13c,
    author = {Badillo, S. and Varoquaux, G. and P. Ciuciu},
    title = {Hemodynamic estimation based on consensus clustering},
    booktitle = {{IEEE Pattern Recognition in Neuroimaging (PRNI)}},
    year = 2013,
    address = {Philadelphia, USA},
    month = {June} 
    }
    


  2. S. Badillo, T. Vincent, and P. Ciuciu. Multi-session extension of the joint-detection framework in fMRI. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 1504-1507, Apr. 2013.
    @inproceedings{Badillo13,
    author = {S. Badillo and T. Vincent and P. Ciuciu},
    title = {Multi-session extension of the joint-detection framework in f{MRI}},
    booktitle = { 10th {{P}roc. {IEEE} {I}SBI}},
    year = 2013,
    pages = {1504--1507},
    address = {San Francisco, {CA}},
    month = {Apr.} 
    }
    


  3. C. Bakhous, F. Forbes, T. Vincent, M. Dojat, and P. Ciuciu. Variational variable selection to assess experimental condition relevance in event-related fMRI. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 1500-1503, Apr. 2013.
    @inproceedings{Bakhous13,
    author = {Bakhous, C. and F. Forbes and T. Vincent and Dojat, M. and P. Ciuciu},
    title = {Variational variable selection to assess experimental condition relevance in event-related f{MRI}},
    booktitle = { 10th {{P}roc. {IEEE} {I}SBI}},
    year = 2013,
    pages = {1500--1503},
    address = {San Francisco, {CA}},
    month = {Apr.} 
    }
    


  4. A. Cachia, G. Borst, J. Vidal, C. Fischer, A. Pineau, J.-F. Mangin, and O. Houde. Differences in executive control efficiency in prescool children is predicted by differences in ACC morphology. In 20th Annual Meeting of the Cognitive-Neuroscience-Society, Journal of Cognitive Neuroscience, Supplement: S, San Francisco, pages 43-43, 2013.
    @inproceedings{Cachia13,
    author = {A. Cachia and G. Borst and J. Vidal and C. Fischer and A. Pineau and J.-F. Mangin and O. Houde},
    title = {Differences in executive control efficiency in prescool children is predicted by differences in ACC morphology},
    booktitle = {20th Annual Meeting of the Cognitive-Neuroscience-Society, Journal of Cognitive Neuroscience, Supplement: S},
    year = 2013,
    pages = {43--43},
    address = {San Francisco} 
    }
    


  5. N. Chauffert, P. Ciuciu, J. Kahn, and P. Weiss. Traveling salesman-based variable density sampling. In 10th International CConference on Sampling Theory and Applications, Bremen, Germany, pages -, July 2013.
    @inproceedings{Chauffert13c,
    author = {N. Chauffert and P. Ciuciu and Kahn, J. and P. Weiss},
    title = {Traveling salesman-based variable density sampling},
    booktitle = { 10th {{I}nternational {C}Conference on {S}ampling {T}heory and {A}pplications}},
    year = 2013,
    pages = {--},
    address = {Bremen, Germany},
    month = {July} 
    }
    


  6. N. Chauffert, P. Ciuciu, and P. Weiss. Variable density compressed sensing in MRI. Theoretical vs heuristic sampling strategies. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 298-301, Apr. 2013.
    @inproceedings{Chauffert13,
    author = {N. Chauffert and P. Ciuciu and P. Weiss},
    title = {Variable density compressed sensing in {MRI}. Theoretical vs heuristic sampling strategies},
    booktitle = { 10th {{P}roc. {IEEE} {I}SBI}},
    year = 2013,
    pages = {298--301},
    address = {San Francisco, {CA}},
    month = {Apr.} 
    }
    


  7. N. Chauffert, P. Ciuciu, P. Weiss, and F. Gamboa. From variable density sampling to continuous sampling using Markov chains. In 10th International CConference on Sampling Theory and Applications, Bremen, Germany, pages -, July 2013.
    @inproceedings{Chauffert13b,
    author = {N. Chauffert and P. Ciuciu and P. Weiss and Gamboa, F.},
    title = {From variable density sampling to continuous sampling using {M}arkov chains},
    booktitle = { 10th {{I}nternational {C}Conference on {S}ampling {T}heory and {A}pplications}},
    year = 2013,
    pages = {--},
    address = {Bremen, Germany},
    month = {July} 
    }
    


  8. A.-L. Fouque, C. Fischer, V. Frouin, P. Ciuciu, and E. Duchesnay. Comparison of Features for Voxel-Based Analysis and Classification of Anatomical Neuroimaging Data. In 3rd Innernal Workshop on Pattern Recognition in Neuroimaging (PRNI), IEEE, 2013.
    @inproceedings{Fouque13,
    author = {A.-L. Fouque and C. Fischer and V. Frouin and P. Ciuciu and E. Duchesnay},
    title = {Comparison of Features for Voxel-Based Analysis and Classification of Anatomical Neuroimaging Data},
    booktitle = {{3rd Innernal Workshop on Pattern Recognition in Neuroimaging (PRNI), IEEE}},
    year = 2013 
    }
    


  9. N. Labra, M. Figueroa, P. Guevara, D. Duclap, J. Hoeunou, C. Poupon, and J.-F. Mangin. GPU-Based acceleration of an automatic white matter segmentation algorithm using CUDA. In Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, pages 89-92, 2013. IEEE.
    @inproceedings{Labra13,
    author = {N. Labra and M. Figueroa and P. Guevara and D. Duclap and J. Hoeunou and C. Poupon and J.-F. Mangin},
    title = {GPU-Based acceleration of an automatic white matter segmentation algorithm using CUDA},
    booktitle = {Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE},
    year = 2013,
    pages = {89--92},
    organization = {IEEE} 
    }
    


  10. E. Pardo, P. Guevara, D. Duclap, J. Houenou, A. Lebois, B. Schmitt, D. Le Bihan, J.-F. Mangin, and C. Poupon. Study of the variability of short association bundles on a HARDI database. In Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, pages 77-80, 2013. IEEE.
    @inproceedings{Pardo13,
    author = {E. Pardo and P. Guevara and D. Duclap and J. Houenou and A. Lebois and B. Schmitt and D. Le Bihan and J.-F. Mangin and C. Poupon},
    title = {Study of the variability of short association bundles on a HARDI database},
    booktitle = {Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE},
    year = 2013,
    pages = {77--80},
    organization = {IEEE} 
    }
    


  11. B. Schmitt, D. Duclap, A. Lebois, P. Guevara, H. Zhang, Y. Assaf, F. Poupon, D. Rivière, Y. Cointepas, D. Le Bihan, J.-F. Mangin, and C. Poupon. A novel probabilistic connectivity atlas for the human connectome: the CONNECT/ARCHI atlas. In Proc. ISMRM, volume 21, pages 3155, 2013. Keyword(s): lnao.
    @inproceedings{Schmitt13,
    author = {B. Schmitt and D. Duclap and A. Lebois and P. Guevara and H. Zhang and Y. Assaf and F. Poupon and D. Rivière and Y. Cointepas and D. Le~Bihan and J.-F. Mangin and C. Poupon},
    title = {A novel probabilistic connectivity atlas for the human connectome: the CONNECT/ARCHI atlas},
    booktitle = {{P}roc. {{ISMRM}}},
    year = 2013,
    volume = 21,
    pages = 3155,
    keywords = {lnao} 
    }
    


  12. T. Vincent, F. Forbes, and P. Ciuciu. Bayesian BOLD and perfusion source separation and deconvolution from functional ASL imaging. In 38th Proc. IEEE ICASSP, Vancouver, Canada, pages 1003-1007, May 2013.
    @inproceedings{Vincent13,
    author = {T. Vincent and F. Forbes and P. Ciuciu},
    title = {Bayesian {BOLD} and perfusion source separation and deconvolution from functional {ASL} imaging},
    booktitle = { 38th {{P}roc. {IEEE} {I}CASSP}},
    year = 2013,
    pages = {1003--1007},
    address = {Vancouver, Canada},
    month = {May} 
    }
    


  13. T. Vincent, F. Forbes, and P. Ciuciu. Bayesian BOLD and perfusion source separation and deconvolution from functional ASL imaging. In 38th Proc. IEEE ICASSP, Vancouver, Canada, pages 1003-1007, May 2013.
    @inproceedings{Vincent13a,
    author = {T. Vincent and F. Forbes and P. Ciuciu},
    title = {Bayesian {BOLD} and perfusion source separation and deconvolution from functional {ASL} imaging},
    booktitle = { 38th {{P}roc. {IEEE} {I}CASSP}},
    year = 2013,
    pages = {1003--1007},
    address = {Vancouver, Canada},
    month = {May} 
    }
    


  14. T. Vincent, J. Warnking, M. Villien, A. Krainik, P. Ciuciu, and F. Forbes. Bayesian Joint Detection-Estimation of cerebral vasoreactivity from ASL fMRI data. In 16th Proc. Proc. MICCAI, LNCS Springer Verlag, volume 2, Nagoya, Japan, pages 616-623, Sep. 2013.
    @inproceedings{Vincent13b,
    author = {T. Vincent and J. Warnking and M. Villien and A. Krainik and P. Ciuciu and F. Forbes},
    title = {{Bayesian Joint Detection-Estimation of cerebral vasoreactivity from ASL fMRI data}},
    booktitle = { 16th {P}roc. Proc. MICCAI, LNCS Springer Verlag},
    year = 2013,
    volume = 2,
    pages = {616--623},
    address = {Nagoya, Japan},
    month = {Sep.} 
    }
    


  15. N. Zilber, P. Ciuciu, P. Abry, and V. van Wassenhove. Learning-induced modulation of scale-free properties of brain activity measured with MEG. In 10th Proc. IEEE ISBI, San Francisco, CA, pages 986-989, Apr. 2013.
    @inproceedings{Zilber13,
    author = {Zilber, N. and P. Ciuciu and Abry, P. and van Wassenhove, V.},
    title = {Learning-induced modulation of scale-free properties of brain activity measured with {MEG}},
    booktitle = { 10th {{P}roc. {IEEE} {I}SBI}},
    year = 2013,
    pages = {986--989},
    address = {San Francisco, {CA}},
    month = {Apr.} 
    }
    



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