BrainVISA software documentation


BrainVISA software documentation

BrainVISA is the general name of all the projects we are developing in IFR49 / I2BM or co-developing with partner labs: the final goal is to provide a complete software package for brain cartography. It's a long term goal, of course. So BrainVISA package includes BrainVISA and its toolboxes, Anatomist, and several software projects: AIMS/VIP (image processing), Sigraph (sulcal graphs processing).

Here are some links to the different projects docs:

All available docs in bulk

Documentation Index

BrainVISA Toolboxes

BrainRAT manual [PDF]

Sulci atlas v. 2011 used in BrainVISA Morphologist toolbox for sulci identification with SPAM method (since BrainVISA v. 3.2.1 ).
Until BrainVISA v. 3.2.0, the sulci identification (ANN method) used the following nomenclature.

AIMS library and commandlines

AIMS help pages
AIMS Changelog
AIMS tutorial [PDF]

Soma-workflow

A unified and simple interface to parallel computing resources. See documentation here.

Documentation of some of our disk Formats

.mesh surface format documentation: [PDF] [LaTeX] [examples]
.tex texture format documentation: [PDF] [LaTeX]
.bck "bucket" format documentation: [PDF] [LaTeX]

Miscelaneous documents

The french document of the BrainVISA training course 2009 [PDF version]. Associated data is available for download here (demo_data.zip).

And, of course, here is a link to the web site of BrainVISA and Anatomist:
http://brainvisa.info