Search found 20 matches

by sebastian
Tue Dec 05, 2017 1:07 am
Forum: BrainVISA
Topic: Problem with installing brain visa on a mac
Replies: 3
Views: 14695

Re: Problem with installing brain visa on a mac

Dear Steph, try this : 1 - mount the installation file "brainvisa_installer-4.5.0-osx-online.dmg" (double-click) 2 - run Terminal (Applications/Utilities) 3 - go far away inside the folder mounted by the .dmg file as : cd /Volumes/BrainVISA-installer/brainvisa_installer-4.5.0-osx-online.ap...
by sebastian
Tue Dec 05, 2017 1:05 am
Forum: BrainVISA
Topic: installation error on Mac
Replies: 1
Views: 11918

Re: installation error on Mac

Dear monarosenke, try this : 1 - mount the installation file "brainvisa_installer-4.5.0-osx-online.dmg" (double-click) 2 - run Terminal (Applications/Utilities) 3 - go far away inside the folder mounted by the .dmg file as : cd /Volumes/BrainVISA-installer/brainvisa_installer-4.5.0-osx-onl...
by sebastian
Wed Dec 09, 2009 12:48 am
Forum: BrainVISA
Topic: AimsFileConvert
Replies: 3
Views: 4174

Re: AimsFileConvert

Dear Brainvisa,

private message sent to Denis giving the way to access the DICOM files.

To be continued ...

Best regards

Sebastian
by sebastian
Sat Dec 05, 2009 1:03 am
Forum: BrainVISA
Topic: Brainvisa T1 pipeline problem
Replies: 31
Views: 24597

Re: Brainvisa T1 pipeline problem

Dear Keepmoon, dear Denis, I'm wrong ! "Resampling" needs size and dim to be set. If you set 1 for sizex you need to set dimx according to the initial dimensions of the image. For example : size x equal 2 mm and dim x 256 if you want to resample size x to 1 mm you must set dim x to 512. Be...
by sebastian
Sat Dec 05, 2009 12:31 am
Forum: BrainVISA
Topic: Brainvisa T1 pipeline problem
Replies: 31
Views: 24597

Re: Brainvisa T1 pipeline problem

Dear Keepmoon, xsize and ysize are quiet different here (1.21 vs 1.0001) you may reslice your image to get the same value for both dimensions (x & y). To do so, switch to "expert" user level (BrainVisa menu > preferences > userLevel and choose "expert") and relaunch brainvisa...
by sebastian
Wed Dec 02, 2009 12:35 am
Forum: BrainVISA
Topic: AimsFileConvert
Replies: 3
Views: 4174

AimsFileConvert

Dear Brainvisa experts, The following green quoted text comes from another topic about general import error. I submit this this new topic to discuss more precisely about confusing orientation after converting DICOM to ANALYZE or NIFTI. I find a bug in the previous (and actually the newer 3.2.0) Aims...
by sebastian
Wed Dec 02, 2009 12:22 am
Forum: BrainVISA
Topic: general import error
Replies: 10
Views: 10574

Re: general import error

Denis, I try the third method. I use, as root, "chcon -t texrel_shlib_t /usr/local/cartopack-Fedora-4-i686-3.2.0-2009_11_05/lib/*". The dicom conversion is OK. Here the output of AimsFileInfo --info -verbose 2 libaimsvida.so.3.2.0: libaimsvida.so.3.2.0: cannot open shared object file: No s...
by sebastian
Tue Dec 01, 2009 12:22 pm
Forum: BrainVISA
Topic: Brainvisa T1 pipeline problem
Replies: 31
Views: 24597

Re: Brainvisa T1 pipeline problem

Dear keepmoon, I know this problem. May be the x and y size are different (exemple : xsize = 0.9375 and ysize = 0.9374999999). If I'm correct you have to edit the yourimage.ima.minf and may be yourimage.dim to get exact xsize and ysize and let the pipeline do the whole process without any error. Use...
by sebastian
Tue Dec 01, 2009 11:08 am
Forum: BrainVISA
Topic: general import error
Replies: 10
Views: 10574

Re: general import error

Denis, exactly, the 2 digits dicom plugin fails : AimsFileInfo --info --verbose 2 libaimsvida.so.3.2.0: libaimsvida.so.3.2.0: cannot open shared object file: No such file or directory library libaimsvida.so.3.2 successfully loaded. libaimsdicom.so.3.2.0: libaimsdicom.so.3.2.0: cannot open shared obj...
by sebastian
Mon Nov 30, 2009 9:08 pm
Forum: BrainVISA
Topic: general import error
Replies: 10
Views: 10574

Re: general import error

Denis, interesting command line informations from the two versions of brainvisa : Brainvisa : cartopack-Fedora-4-i686-3.2.0-2009_11_05 AimsFileInfo --info | grep DICOM DICOM input : no Brainvisa : cartopack-Fedora-4-i686-3.1.6-2009_05_14 AimsFileConvert --info | grep DICOM DICOM input : no 2 DICOM r...
by sebastian
Mon Nov 30, 2009 8:59 pm
Forum: BrainVISA
Topic: general import error
Replies: 10
Views: 10574

Import error ARRRRRRRRRRRRRRH!!!

Denis, I use AimsFileConvert to convert DICOM to NIFTI. Since the last version (cartopack-Fedora-4-i686-3.2.0-2009_11_05), AimsFileConvert couldn't recognize DICOM input (AimsFileConvert: ../blablabla/i3703459.MRDC.1 : unsupported data type Volume / UNKNOWN). echo $DCMDICTPATH works. On my computer,...
by sebastian
Tue Nov 17, 2009 12:33 pm
Forum: BrainVISA
Topic: x86_64 package on Fedora 11
Replies: 1
Views: 2763

x86_64 package on Fedora 11

Dear BrainVisa experts,

nice job ! On my laptop, Fedora core 11 x86_64, the Mandriva08 X86_64 version gives "segmentation error" during ./setup.sh. The i686 version works fine.

Best regards

Sebastian
by sebastian
Sun Aug 23, 2009 10:40 pm
Forum: BrainVISA
Topic: FC 11?
Replies: 6
Views: 5229

Re: FC 11?

Denis,

fine ! It works. Thank you.

Best regards

Sebastian
by sebastian
Wed Jul 29, 2009 1:10 pm
Forum: BrainVISA
Topic: FC 11?
Replies: 6
Views: 5229

Re: FC 11?

Denis, thanks ! I'm sorry a new error message now : Building BrainVISA cache Traceback (most recent call last): File "<string>", line 27, in <module> File "/usr/local/cartopack-Fedora-4-i686-3.1.6-2009_05_14/brainvisa/neuro.py", line 49, in <module> from soma.wip.application.api ...
by sebastian
Tue Jul 28, 2009 10:46 pm
Forum: BrainVISA
Topic: FC 11?
Replies: 6
Views: 5229

Re: FC 11?

FC 11 i386 or x86_64 ? On my laptop (FC11 x86_64) I couldn't get proper installation : ./setup.sh tells : Building BrainVISA cache python: can't open file 'est': [Errno 2] No such file or directory BrainVISA/Anatomist is now installed. Enjoy. and brainvisa command : python: can't open file 'est': [E...