Search found 22 matches
- Fri Jun 20, 2008 3:32 pm
- Forum: BrainVISA
- Topic: VipSplitBrain Failure
- Replies: 1
- Views: 2557
VipSplitBrain Failure
Hi When processing the anatomical pipeline, we have the following problem with the Split Brain step: in Vip Split Brain 1 RuntimeError: System command exited with non null value : 111 In the log, we found the following information: erosion of size 4.000000 mm dist: 4.0 cc(16928) highest point: x:83,...
- Thu Apr 19, 2007 7:26 pm
- Forum: AIMS
- Topic: CSF characteristics from VipHistoAnalysis
- Replies: 3
- Views: 16224
- Thu Apr 19, 2007 3:14 pm
- Forum: AIMS
- Topic: CSF characteristics from VipHistoAnalysis
- Replies: 3
- Views: 16224
CSF characteristics from VipHistoAnalysis
Hi,
Which options should I use in VipHistoAnalysis in order to obtain the mean and standard-deviation of CSF, in addition to those of GM and WM?
Many thanks,
Olivier
PS: I put this question in this forum even though it is not a Aims command. Please let me know if I should post it elsewhere.
Which options should I use in VipHistoAnalysis in order to obtain the mean and standard-deviation of CSF, in addition to those of GM and WM?
Many thanks,
Olivier
PS: I put this question in this forum even though it is not a Aims command. Please let me know if I should post it elsewhere.
- Mon Nov 27, 2006 5:50 pm
- Forum: BrainVISA
- Topic: Intracranial volume
- Replies: 2
- Views: 3396
- Mon Nov 27, 2006 4:27 pm
- Forum: BrainVISA
- Topic: Intracranial volume
- Replies: 2
- Views: 3396
Intracranial volume
Hi,
Is there a process or command-line in BV that computes the intracranial volume?
There is a "Brainvolume" process but the CSF segmentation does not seem to include all of the outer CSF (which I guess is not distinguishable from skull based on T1 only)
Thanks
Olivier
Is there a process or command-line in BV that computes the intracranial volume?
There is a "Brainvolume" process but the CSF segmentation does not seem to include all of the outer CSF (which I guess is not distinguishable from skull based on T1 only)
Thanks
Olivier
- Wed Jun 28, 2006 10:44 am
- Forum: AIMS
- Topic: Substration of two pictures
- Replies: 2
- Views: 5603
Yes, NmrSNR is in my package and this is exactly what I need. Thanks! Just two last questions/remarks: 1) When giving the ROI as a mask, I guess that the mean of the signal is computed on the mask and the SD of the noise is computed on the complementary of the mask. Is it possible to compute the sig...
AimsSNR
Hi, I am having difficulties using AimsSNR command line. As far as I understand, I guess that one has to provide a ROI in which the standard deviation of the noise will be estimated. It seems that this ROI can be provided either as a sphere (coordinates x,y,z and radius) or as a binary volume. But I...
- Tue Feb 21, 2006 5:19 pm
- Forum: BrainVISA
- Topic: Import MINC data
- Replies: 4
- Views: 4831
- Tue Mar 22, 2005 8:54 pm
- Forum: BrainVISA
- Topic: error in save the result figure ?
- Replies: 2
- Views: 4198
- Thu Mar 17, 2005 8:45 pm
- Forum: AIMS
- Topic: Compiling aims (problem with share directory)
- Replies: 8
- Views: 9888
- Wed Mar 16, 2005 12:50 am
- Forum: AIMS
- Topic: Compiling aims (problem with share directory)
- Replies: 8
- Views: 9888
Concerning the missing libaimsminc.so (with the previous development version, not the one you uploaded yesterday) I think I found the problem. In this previous version, there was no directory bundle_aimsminc under aimsdata/src So I just copied this directory from the new version of the package and ...
- Wed Mar 16, 2005 12:29 am
- Forum: AIMS
- Topic: Compiling aims (problem with share directory)
- Replies: 8
- Views: 9888
- Tue Mar 15, 2005 5:06 pm
- Forum: AIMS
- Topic: Compiling aims (problem with share directory)
- Replies: 8
- Views: 9888
Thanks a lot Denis. It helps. I decided to conform to the binary distrib and it seems to work, except that it still does not find the minc plugin (even though it finds the jpeg plugin). I have the impression that it is related to a .so vs .dylib issue. It seems that I have a .dylib library for each ...