BrainVISA

Hello all,

I saw BrainVISA Sulci nomenclature.

The nomenclature of F.C.M.ant. and F.C.M.post. is the same definition of 'Cingulate sulci'?

I wonder there is a definition of 'Para cingulate sulcus' in BrainVISA Sulci nomenclature?

Please let me know it!


Jin-ju

Hello~all. I'd like to use brainvisa -b - c 'defaultContext().runProcess("RicPeterKSulcalLength", graph="/home/jinju/DB/test/Jang_WJ/t1mri/default_acquisition/default_analysis/folds/3.0/default_session_auto/LJang_WJ_default_session_auto.arg")' to run the scrip in batch mode. But ...

Thanks Denis!

Hello, I run the bv process following this: #!/usr/bin/python from neuroHierarchy import databases from neuroProcesses import * import os from subprocess import * from sys import * helpmsg=''' i_dir=argv[4] i_data=argv[5] name=argv[6] e.g) brainvisa -b -e /gpfs5/jinju/anadoall.py /gpfs5/jinju/data_p...

Dear bv experts, I'm running BV with batch script, and would like to extrc its sulci, but I am confronted with the message appearing below. Does anyone have any comments? Some data process well but others do not. I wonder whether my data are wrong or not. So, I attached my data. Loading toolbox RIC ...

Hi, Dominique Thank you for your answer. I did it as you say but I got some error message. Could you help me to solve the problem again? Error message: [jinju@localhost ~]$ brainvisa -b -c 'defaultContext().runProcess("ImportT1MRI", input="/home/jinju/t1_icbm.mnc", output = { &qu...

Thanks, Yann I did it on terminal for test. brainvisa -b -c 'defaultContext().runProcess("ImportT1MRI", input="/home/jinju/t1_icbm.mnc", output = { 'protocol': 'a test', 'subject': 'a ddd', 'acquisition': 'default_acquisition' } )' It doesn't work. Message is following this: Load...

Hi, Thank you sooooooo much! By the way, could you modify that? defaultContext().runProcess("ImportT1MRI", input="/home/jinju/t1_icbm.mnc", output = How to write protocol, subject?? ) defaultContext().runProcess("preparesubject", T1mri="/home/jinju/DB/test/ddd/ddd/...

Hi, again If I run the t1pipeline07 process on the server like this, brainvisa -b -c 'defaultContext().runProcess( "t1pipeline07", <parameters> )' What should I put in parameters? Could you tell me more in detail? How do I manage input and output files or argument? Nobody do like this?? Wh...

Thank you for your answer. By the way, I wrote the script with commandline from logfile. (I'm poor at programming so I did it.) It doesn't work at the siMorpho commandline. Who can modify my script?? or Who give me some advice?? (I'd like to receive the script for running T1 process.) It ended in fa...

Hi, BV users
Did anyone write a python script of the T1 pipeline 2007 process for running it on server??
It's my purpose to deal with lots of data on IBM server.
My problem is that I don't know how to write a python script.
Please, help me...
(I want to receive it.)

Hi, I'm writing the script in batch in order to run the bv process on server. During this work, I wonder where the bv_166754.sel creates? [I think it is from morphometry.py] Why does it creat?? What does it do?? Can I make this file?? *BEGIN TREE 1.0 siMorpho modelFile /usr/local/softwares/brainvisa...

By the way, I wonder when the bv_******.cfg creates? (I know it is parameters file for inputs for the command. ) Does it create before automatic recognition process? And, I have another query about RIC Peter Ks Magic Sulcal Length. I confirmed the commands from the log. =============================...

Hi, Yann
Thanks a lot for your answer.
I'm trying to...
But I'm sorry to keep troubling you.
I don't know how to use "siRelax" command.
Could you show me an example??


Jin-ju

Hi~

I'll run the BV to get some results from using the morphometry / automatic recognition process with a lot of patient data on IBM server.
I'd like to know how to use in batch mode.
Please, give me some advice to handle it.

Happy New Year

Jin-ju