Search found 35 matches

by rvboutin
Wed Jul 19, 2017 9:02 am
Forum: BrainVISA
Topic: compilation error on Ubuntu 16.04LTS
Replies: 3
Views: 2605

Re: compilation error on Ubuntu 16.04LTS

Hi Denis,
OK thanks for your reply. I'll see with Fabien why he gave me the link to the trunk version and see if he wants me to download bug_fix one.
I'll try what you advise too.
Thanks,
Rv
by rvboutin
Tue Jul 18, 2017 6:19 pm
Forum: BrainVISA
Topic: compilation error on Ubuntu 16.04LTS
Replies: 3
Views: 2605

compilation error on Ubuntu 16.04LTS

Hi, Working with Fabien Rastello to try to compil BrainVisa on Ubuntu 16.04LTS, I have run the following command: svn export https://bioproj.extra.cea.fr/neurosvn/brainvisa/development/brainvisa-cmake/trunk /home/user/Brainvisa_temp/brainvisa-cmake/ --force cd /home/user/Brainvisa_temp/brainvisa-cma...
by rvboutin
Fri Dec 09, 2016 2:29 pm
Forum: BrainVISA
Topic: preclinical modules
Replies: 4
Views: 5524

Re: preclinical modules

Hi,
Thanks for your reply. Who could that be? Could you put me in the right direction? I have contacts @ the SHFJ who were then the main user...
Cheers,
Rv
by rvboutin
Fri Dec 09, 2016 1:02 pm
Forum: BrainVISA
Topic: preclinical modules
Replies: 4
Views: 5524

Re: preclinical modules

Hi Denis,
Thanks for your reply. I'll edit my question to put it in English.
I just saw your reply today. So, could you put me in touch with the people of the CATI team please? That would be much appreciated.
Thanks,
Rv
by rvboutin
Tue Nov 22, 2016 11:20 am
Forum: BrainVISA
Topic: preclinical modules
Replies: 4
Views: 5524

preclinical modules

Hello, I am using the Nuclear Imaging/Imagene/PET image segmentation toolbox. I got them through a collaboration with the SHFJ at the time (back in 2006). I am currently using a modified version in BrainVisa 4.1.1 on Ubuntu 12.04.5LTS, but with the regular Ubuntu upgrades I start to have difficultie...
by rvboutin
Tue Dec 09, 2014 4:26 pm
Forum: BrainVISA
Topic: PET Maximum/Sum Intensity Projection
Replies: 7
Views: 3217

Re: PET Maximum/Sum Intensity Projection

Hi Denis,
OK no worries, I found that the command line "EcatVolMIProj" does just what I want so I am fine.
Thanks again for your help.
Rv
by rvboutin
Tue Dec 09, 2014 4:18 pm
Forum: BrainVISA
Topic: PET Maximum/Sum Intensity Projection
Replies: 7
Views: 3217

Re: PET Maximum/Sum Intensity Projection

Hi Denis,
Thanks for your reply. The MIP tool in Anatomist might do what I need, but where are the volume rendering object options in Anatomist? I can't find them?
Thanks,
Rv
by rvboutin
Tue Dec 09, 2014 1:19 pm
Forum: BrainVISA
Topic: PET Maximum/Sum Intensity Projection
Replies: 7
Views: 3217

Re: PET Maximum/Sum Intensity Projection

Hi Denis,
Any hope that you could get the nuclear imaging toolbox or the PET Maximum/Sum Intensity Projection binary and upload it somewhere for me?
Cheers,
Rv
by rvboutin
Tue Dec 09, 2014 12:58 am
Forum: BrainVISA
Topic: PET Maximum/Sum Intensity Projection
Replies: 7
Views: 3217

Re: PET Maximum/Sum Intensity Projection

Hi Denis, OK I see, I noticed that the nuclear imaging tool box had disappeared. That's a shame there were very useful tools for preclinical imaging in there. The "PET Maximum/Sum Intensity Projection" tool was as its name indicated used to obtain an maximum and sum intensity projection im...
by rvboutin
Sat Dec 06, 2014 7:56 pm
Forum: BrainVISA
Topic: PET Maximum/Sum Intensity Projection
Replies: 7
Views: 3217

PET Maximum/Sum Intensity Projection

Hi, I am trying to create a PET Maximum/Sum Intensity Projection file in Brainvisa 4.1.1 (I have the preclinical PET segmentation module in this version that I cannot transfer to another version), and I am pretty sure I was able to make PET Maximum/Sum Intensity Projection file before with the modul...
by rvboutin
Mon Nov 18, 2013 8:33 pm
Forum: Anatomist
Topic: bug in Anatomist 4.3.0 64bit (on Ubuntu 12.04LTS 64bit)
Replies: 5
Views: 4776

Re: bug in Anatomist 4.3.0 64bit (on Ubuntu 12.04LTS 64bit)

Hi Denis, I don't know if you have had time to look into this, but the bug is still happening... I can't find any reasons for that.... when I said "I am giving up", I meant that I stop reproducing the bug with the sum PET image after 342 modifications... :D not that I stopped looking into ...
by rvboutin
Thu Nov 07, 2013 5:57 pm
Forum: BrainVISA
Topic: install problem on Ubuntu 12.04 LTS
Replies: 3
Views: 3354

Re: install problem on Ubuntu 12.04 LTS

Follow up on that thread... I should have done it earlier.
The problem was indeed that all the ia32-libs and ia32-libs-multiarch:i386 need to be installed via Synaptic to have Anatomist 32bit working on a 64bit system.
Problem solved.
Rv
by rvboutin
Thu Nov 07, 2013 5:53 pm
Forum: BrainVISA
Topic: study/subject not appearing in database
Replies: 6
Views: 3426

Re: study/subject not appearing in database

Hi Denis,
Spot on! That was the culprit!! Changing the first characters of the PET file to "m_" solved the problem, I can now select the files in Brainvisa.
Thanks a lot!
Rv
by rvboutin
Wed Nov 06, 2013 3:03 pm
Forum: BrainVISA
Topic: study/subject not appearing in database
Replies: 6
Views: 3426

Re: study/subject not appearing in database

Hi, OK so, I checked the name of the files, there was a discrepancy, i.e. the folder name was in lower case and the file name in upper case... I changed this, no effect. Just to clarify, I have only PET and CT files in each subject folders, there is no T1 MRI associated with this study. To avoid mis...
by rvboutin
Tue Nov 05, 2013 10:33 pm
Forum: BrainVISA
Topic: study/subject not appearing in database
Replies: 6
Views: 3426

Re: study/subject not appearing in database

Hi,
Yes I did update the databases. I even tried to delete all the database files and update again. I also tried to copy just these folder on another disk and create a new database, it still does not work...
Cheers,
Rv

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