Search found 39 matches

by pdeman
Thu May 03, 2018 7:59 am
Forum: BrainVISA
Topic: Database is locked
Replies: 2
Views: 1884

Re: Database is locked

is there any plane "quitting" SQlite to something else ? If I remember well it was something in consideration before.
by pdeman
Wed Mar 21, 2018 10:49 am
Forum: BrainVISA
Topic: Checking existence of a Format or FileType
Replies: 9
Views: 3987

Re: Checking existence of a Format or FileType

I realize that these basic neuroimaging types are used in several independent toolboxes, so I guess in later releases we should probably define most of them in a central place in Axon, not in toolboxes, even when they are not used yet. Either in builtin, or in a separate file at the same location, ...
by pdeman
Wed Mar 21, 2018 10:19 am
Forum: BrainVISA
Topic: Checking existence of a Format or FileType
Replies: 9
Views: 3987

Re: Checking existence of a Format or FileType

and for the transformation file I guess I will have difficulties ... what we have: 'PET-<subject>_<acquisition>', SetType( 'Referential of PET' ), 'PET-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ), 'PET-<subject>_<acquisition>_TO_Talairach-MNI',...
by pdeman
Wed Mar 21, 2018 7:20 am
Forum: BrainVISA
Topic: Checking existence of a Format or FileType
Replies: 9
Views: 3987

Re: Checking existence of a Format or FileType

I don't have any error anymore with the filetype declaration. but I realize that to make something clean it's gonna be difficult ... for us, PET was a "final" filetype. in the nuclear toolbox it seems to be more like a filetype, having subtype. and what would correspond to our PET would be...
by pdeman
Tue Mar 20, 2018 1:00 pm
Forum: BrainVISA
Topic: Checking existence of a Format or FileType
Replies: 9
Views: 3987

Re: Checking existence of a Format or FileType

Hi, yes for now I only have problem with the nuclear imaging toolbox. (actually some users because I don't have it myself so I can't test). but we declare, PET, FLAIR, FGATIR etc ... we may have more conflicts one day. so for now I did the "PET" in getAllDiskItemTypes stuff, in my type fil...
by pdeman
Tue Mar 20, 2018 11:58 am
Forum: BrainVISA
Topic: Checking existence of a Format or FileType
Replies: 9
Views: 3987

Re: Checking existence of a Format or FileType

Hi, but the format and type are declared in brainvisa.../brainvisa/toolboxes/toolboxName/types/xxx.py and brainvisa.../brainvisa/toolboxes/toolboxName/hierarchies/brainvisa-3.2.0/yyy.py when does these files execute ? at shared database update ? so in the xxx.py and yyy.py I should do an from brainv...
by pdeman
Wed Mar 01, 2017 10:16 am
Forum: Anatomist
Topic: connect self.a.createWindow() to doubleClick
Replies: 9
Views: 6459

Re: connect self.a.createWindow() to doubleClick

is it possible to add the icon to a anatomist windows already created ? My gui is already generated, with two anatomist windows on it. gui_ftract_results.png once the user generate the meshes (ftract results) it would add the icon for the specific controls to navigate on these results: so at the end...
by pdeman
Tue Feb 28, 2017 2:51 pm
Forum: Anatomist
Topic: connect self.a.createWindow() to doubleClick
Replies: 9
Views: 6459

Re: connect self.a.createWindow() to doubleClick

thanks for the details. I have succeed to add an icon with the ftract logo for the control. which do nothing for now but I'll try to understand how to do. how should I do to have the explanation of the control when the mouse goes over the logo ? as for other controls. for now it just says "ftra...
by pdeman
Mon Feb 20, 2017 3:18 pm
Forum: Anatomist
Topic: anatomist texture rendering no interpolation
Replies: 8
Views: 4889

Re: anatomist texture rendering no interpolation

so solved, as you find, another process modified the .gii and I didn't notice it ... sorry
by pdeman
Fri Feb 17, 2017 11:01 am
Forum: Anatomist
Topic: anatomist texture rendering no interpolation
Replies: 8
Views: 4889

Re: anatomist texture rendering no interpolation

i know it should work exactly the same :) yes mesh and roi texture are compatible as you can see on the second picture, the left side, the fusion between the inflated mesh and mars atlas texture worked well. I am using the same marsatlas texture for the inflated one and the non inflated one. for the...
by pdeman
Thu Feb 16, 2017 3:34 pm
Forum: Anatomist
Topic: anatomist texture rendering no interpolation
Replies: 8
Views: 4889

Re: anatomist texture rendering no interpolation

it worked fine on the Lwhite Lwhite_marsatlas.
image1.jpg
image1.jpg (116.83 KiB) Viewed 4868 times

but it doesn't work on the inflatedLwhite Lwhite_maratlas.
inflated_mesh_boundaries.jpg
inflated_mesh_boundaries.jpg (53.34 KiB) Viewed 4868 times

I don't get it ...
by pdeman
Thu Feb 16, 2017 2:26 pm
Forum: Anatomist
Topic: anatomist texture rendering no interpolation
Replies: 8
Views: 4889

Re: anatomist texture rendering no interpolation

thanks.

for the boundaries, the code make an error:
"*** AttributeError: 'AimsTimeSurface_3_VOID' object has no attribute 'surface'"

but it works fine if I do:

Code: Select all

boundaries = aims.SurfaceManip.meshTextureBoundary(mesh, regions_texture, -1)
(without the .surface())
by pdeman
Tue Feb 14, 2017 3:48 pm
Forum: Anatomist
Topic: anatomist texture rendering no interpolation
Replies: 8
Views: 4889

anatomist texture rendering no interpolation

Hi, I am trying to do some rendering using MarsAtlas and when I open the volume, on the "line" between two parcels, the color is interpolated as shown on this image: interpolation_between_parcels.png I have unchecked the option "interpolation on volumes" in anatomist, settings, p...
by pdeman
Mon Feb 13, 2017 3:22 pm
Forum: Anatomist
Topic: connect self.a.createWindow() to doubleClick
Replies: 9
Views: 6459

Re: connect self.a.createWindow() to doubleClick

Hi, I haven't understand how to add the control. In IntrAnat codes I do: import anatomist.direct.api as testanatomist cd = anatomist.cpp.ControlDictionary.instance() now I have the object with existing controls, I want to add one: cd.addControl('leftMouseDoubleClick',lambda:self.leftmousedoubleclick...
by pdeman
Tue Feb 07, 2017 10:48 am
Forum: AIMS
Topic: aims segmentation fault (core dumped)
Replies: 2
Views: 2815

Re: aims segmentation fault (core dumped)

if I do ldd ./AimsFileConvert I have this linux-vdso.so.1 => (0x00007ffeea7e6000) libaimsdata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libaimsdata.so.4.5.0 (0x00007fee316b4000) libcartodata.so.4.5.0 => /home/epinavubuntu/Desktop/brainvisa_4.5/lib/libcartodata.so.4.5.0 (0x00007fee30cb...

Go to advanced search