BrainVISA

I wrote a script to anonymise dicom files (replace the patient name field and a couple of others by an ID) and copy them in the database (or wherever you want). Are you looking for something like this ? I used dcmodify script from dcmtk to modify dicom fields ( http://dicom.offis.de/dcmtk.php.en ) I...

Thank you very much Denis ! it works !

Thank you Denis. It seems that it miss a librairy... Here is the message I get : (for both 13 and 14 Matlab releases) ­­­>>> import pymat7 Traceback (most recent call last): File "<stdin>", line 1, in ? ImportError: libeng.so: cannot open shared object file: No such file or directory >>> i...

Hello ! I have a problem with matlab. Here the "Matlab configuration" part in the log when I launch brainvisa : Matlab executable: matlab Matlab executable full path: /usr/local/bin/matlab opening matlab to guess release version matlab seems to work. How lucky you are. Matlab version: 6 py...

not yet
I have many different data with different problems. There must be something more than a memory problem because I have 2G of RAM..
I will try other things (if you have ideas of what can I test.. I'm interessted ! ), if I find any solution I will let you know ! Thank you

Hello everybody, I have a problem in the bias correction process (error message below). I think it is due to voxels size : [0.97560999999999998, 0.97656299999999996, 0.97656299999999996, 1] Do you know how I can fix it ? Thank you !!! Anne-Sophie ------------------------------ ! VIP Warning: Differe...

Hello, I try to install BV on Linux Fedora Core 5. When I run the setup.sh I have this message : Building BrainVISA cache sed: error while loading shared libraries: libc.so.6: cannot open shared object file: No such file or directory sed: error while loading shared libraries: libc.so.6: cannot open ...

I believed that the problem came from Matlab (something which would have changed between 6.5 and 7 versions). So in case it helps I give your a link that Mathworks sent me, it is about changes between Matlab versions. http://www.mathworks.com/access/helpdesk/help/techdoc/rn/rn.html In case it helps....

Yes ! I talked with the Mathworks technical support. They told me that it is possible to install both 6.5 and 7 versions on a Linux workstation, and gave me instructions to do this (and also a link to download Matlab 6.5, which I think is available for Matlab 7 owners). If anybody wants to have the ...

Unfortunaltly it doesn't work... I wrote 14 in the MatlabRelease field, and started again BV, but it still not work... Should I do something else (than start again BV) ? Thank you.
Anne-Sophie

Hello ! in case it helps (again !) my test script (below) works well with Matlab 7 on Windows (exactly the same Matlab version that I use on Linux) MatRun = matlab.matlab() MatRun.put("value", self.value ) MatRun.eval( 'b = eye(2) * [2 0; 0 3]') The problem may come from communication betw...

a little more information in case it helps :

if I launch manually Matlab (while BV is running)
I can run
MatRun = matlab.matlab()
MatRun.put("value", self.value )
BUT
MatRun.eval( 'b = eye(2) * [2 0; 0 3]') doesn't work...

Hello ! I have problem running Matlab 7 from BV. I work on Linux (Red Hat Enterprise Linux 3). The validation works well (no problem with matlab.validation()) , but the matlab.matlab() command doesn't work.... it raise the error " RuntimeError: Unable to get matrix from MATLAB workspace " ...

Hi ! I had the same problem on my laptop. I figured out (by chance) that it works when I kill the process Apoint.exe in the processes list of task manager (Apoint is a program that manages some features of the touchpad). I don't really understand why, but it works for me.. Moreover, if I configure m...

I am trying to launch the AimsSubSmapling command (see http://brainvisa.info/forum/viewtopic.php?t=538) in a BV script (in python). I wrote context.system( 'AimsSubSampling', '-i', self.T1mri.fullPath(), '-o', self.T1mri.fullPath(), '--verbose') For example : if my MRI is mySubject.ima, this command...