Search found 22 matches

by pron.a
Tue Feb 21, 2017 1:43 pm
Forum: Anatomist
Topic: viewing rgb FA
Replies: 3
Views: 12307

viewing rgb FA

Hello dear Anatomist team, I would like to visualize fractional anisotropy colored in RGB according to the first eigen vector coordinates as done in FSLview From the first eigen vector volume I generated a RGBa volume using the corresponding anatomist fusion method but I do not know how to say to an...
by pron.a
Thu Jan 19, 2017 5:16 pm
Forum: BrainVISA
Topic: Error using the --username option of bv_maker
Replies: 4
Views: 8525

Error using the --username option of bv_maker

Hello dear Brainvisa team, I am testing compilation of brainvisa on a Jessy (Debian machine) and discovered the --username option of bv_maker. I thought I could use it to solve an svn authentification issue but I have an error. If I don't use the option everything works fine. It seems that the optio...
by pron.a
Thu Oct 20, 2016 2:44 pm
Forum: BrainVISA
Topic: Understanding and handling brainvisa referential system
Replies: 3
Views: 6015

Re: Understanding and handling brainvisa referential system

Super ! Thank you very much for your quick and complete answer Denis :) Thanks for the documentation link :) I have seen tracks are usually saved as graph in Brainvisa but I was not able to understand exactly how. In fact I have the output from dipy in Aims mm coordinates and would like to use Graph...
by pron.a
Thu Oct 20, 2016 9:53 am
Forum: BrainVISA
Topic: Understanding and handling brainvisa referential system
Replies: 3
Views: 6015

Understanding and handling brainvisa referential system

Hello Brainvisa Team, we are currently implementing a diffusion pipeline using Brainvisa which mixes several softwares (FSL and Dipy essentially) and are sometimes writing some outputs using FSL other using nibabel (dipy use it to save fiber bundles as trk files) and we are getting some surprises. S...
by pron.a
Tue Oct 04, 2016 9:01 am
Forum: BrainVISA
Topic: Error of Display with cluster compiled Brainvisa
Replies: 4
Views: 6109

Re: Error of Display with cluster compiled Brainvisa

Hi Denis,
Super ! Thank you very much for your answer :)
We will try it in a second time and let you know if it works.
Have a good day :)
by pron.a
Sat Oct 01, 2016 2:23 pm
Forum: BrainVISA
Topic: Error of Display with cluster compiled Brainvisa
Replies: 4
Views: 6109

Re: Error of Display with cluster compiled Brainvisa

Hi Denis, thank you so much for your quick answer ^^ . Indeed, we realised so far that the libgl-mesa-dev library was coming with libgl-mesa-glx which was doing the job for compiling Brainvisa but was not working efficiently for display on our cluster due to the reasons you explained (luck ^^). Afte...
by pron.a
Fri Sep 30, 2016 12:32 pm
Forum: BrainVISA
Topic: Error of Display with cluster compiled Brainvisa
Replies: 4
Views: 6109

Error of Display with cluster compiled Brainvisa

Hello Brainvisa Team ^^, We are trying to compile brainvisa on a cluster. As a first step we are testing the compilation on a specific node. The node is under Debian 7.11. We installed all dependencies as listed on the Brainvisa wiki. We retrieved the trunk and bug_fix version using the "public...