Search found 161 matches

by Dominique Geffroy
Mon Sep 08, 2008 3:56 pm
Forum: BrainVISA
Topic: Process Documentation
Replies: 3
Views: 3837

Re: Process Documentation

Hi Sara,

Indeed it seems there is a bug with this field HTMLPath. We will correct this soon.
Meanwhile, maybe you can change the permissions on brainvisa's default doc directory...

Dominique
by Dominique Geffroy
Tue Sep 02, 2008 10:04 am
Forum: BrainVISA
Topic: DICOM import failure
Replies: 3
Views: 3974

Re: DICOM import failure

Hi,

Indeed, it is a bug we discovered recently. We will publish a new package with the correction soon.
Meanwhile, you can convert your data to GIS format before using the importation process. it should work.

Dominique
by Dominique Geffroy
Tue Aug 26, 2008 9:45 am
Forum: BrainVISA
Topic: referential trnsformation
Replies: 1
Views: 2653

Re: referential trnsformation

Hi, The converter you mentionned is now in fMRI toolbox -> converters and should be in the package. But if the tranformation information is not in a .mat, there's no need to use this process. You can use Anatomist "Apply builtin referential (SPM/NIFTI)" feature, available by right click on...
by Dominique Geffroy
Tue Jul 29, 2008 10:56 am
Forum: BrainVISA
Topic: Bug in 3.1 "Brain Mask for T2" in diffusion pipeline
Replies: 3
Views: 3879

Re: Bug in 3.1 "Brain Mask for T2" in diffusion pipeline

Hello, I cannot reproduce this problem. I don't see any difference between the linux and windows version for this process. Can you give me more details : linux distrib, screen capture of the process, the database settings file (database_settings.minf). Maybe you can send me your data by email... Dom...
by Dominique Geffroy
Mon Jul 28, 2008 4:25 pm
Forum: BrainVISA
Topic: Bug in 3.1 "Brain Mask for T2" in diffusion pipeline
Replies: 3
Views: 3879

Re: Bug in 3.1 "Brain Mask for T2" in diffusion pipeline

Hi Josselin, Maybe you try to run this process on a 3.0 database ? Database organization has changed in Brainvisa 3.1 and old databases are not compatible with the new version. And the diffusion pipeline has also changed and uses the new hierarchy. If you have an old database, you can convert it to ...
by Dominique Geffroy
Thu Jun 26, 2008 9:44 am
Forum: BrainVISA
Topic: error compute cortical fold graph (3.1)
Replies: 7
Views: 5604

Re: error compute cortical fold graph (3.1)

Hi,

I cannot reproduce this error. Which package did you download (linux, windows, mac) ?

Maybe the problem is linked to the data. Have you checked the previous steps' results ?

Dominique
by Dominique Geffroy
Mon Jun 23, 2008 7:55 am
Forum: BrainVISA
Topic: Brainvisa 3.1 does not setup on MACOSX intel 10.4
Replies: 6
Views: 4769

Re: Brainvisa 3.1 does not setup on MACOSX intel 10.4

Hi,

Did you see an error during the conversion ? Maybe you can try the process "Data management/Update databases".
if it does'nt work, you can look at your databases with the process "Data management/database hierarchy browser" and send me a screen shot.
by Dominique Geffroy
Fri Jun 13, 2008 8:59 am
Forum: BrainVISA
Topic: If anyone needs nifti input/out functionality
Replies: 3
Views: 3702

Re: If anyone needs nifti input/out functionality

Hello,

Indeed, the directory structures are different in Brainvisa 3.1 but there is a process to convert existing databases in the 3.1 version format. It's in : management -> convert old databases.
by Dominique Geffroy
Tue Mar 25, 2008 5:05 pm
Forum: BrainVISA
Topic: Bug selecting coordinates using Anatomist
Replies: 5
Views: 4730

Re: Bug selecting coordinates using Anatomist

Hello

Indeed, it seems to be a bug. I think the callback associated to the click event is recorded several times... I will try to fix it.
Thanks to mention it.

Dominique
by Dominique Geffroy
Fri Oct 12, 2007 1:05 pm
Forum: BrainVISA
Topic: help{basic questions}
Replies: 12
Views: 9109

I don't see where can be the problem. Maybe you can send me your image by email, so we can try and say if the problem comes from the data or the configuration...
by Dominique Geffroy
Thu Oct 11, 2007 9:30 am
Forum: BrainVISA
Topic: help{basic questions}
Replies: 12
Views: 9109

Hello, You can use your image in Brainvisa, .img are recognized. You have first to import your image in Brainvisa using process "data management/import/anatomy/import T1 MRI". You must have choosen before a directory as database (to store data) in menu Preferences/Databases. Then you can u...