Search found 30 matches
- Tue Apr 27, 2010 12:54 pm
- Forum: Anatomist
- Topic: managing object size
- Replies: 5
- Views: 6235
Re: managing object size
Great Denis. It worked fine. I could see all objects with the same scaling. Thanks a lot. For newcomers, I give an example below. # # How to have two objects in two distinct windows with the same scaling # import anatomist.api as ana myana = ana.Anatomist() # loading mesh files mymesh1 = myana.loadO...
- Fri Apr 23, 2010 11:28 am
- Forum: Anatomist
- Topic: managing object size
- Replies: 5
- Views: 6235
Re: managing object size
Thank you Yann. I used the pyanatomist documentation on the website and then was able to see all objects in windows of the same size. Dominique helped me a bit to start with the python procedures. Then, the documentation was helpful with lots of examples. Once the python script done, the objects sti...
- Tue Apr 20, 2010 10:34 am
- Forum: Anatomist
- Topic: managing object size
- Replies: 5
- Views: 6235
managing object size
Hi anatomist-ics, I would like to see the real size of objects (mesh files) in order to visually check whether one is either smaller or larger. Each object is a ROI that belongs to a given subject. I would like to see these objects side by side. So I opened several windows and loaded one object in e...
- Thu Nov 27, 2008 2:06 pm
- Forum: BrainVISA
- Topic: morphometric statistics - bug in the left graph model ?
- Replies: 2
- Views: 3087
Re: morphometric statistics - bug in the left graph model ?
Hi Denis, Yes, you are right: the Brainvisa graph model is fine, either in the right or in the left hemisphere. I found the bug. I think it comes from the parameter "label_attribute", whose default setting is "auto". I set it to "name" and it worked fine. Thank you for ...
- Wed Nov 12, 2008 3:10 pm
- Forum: BrainVISA
- Topic: morphometric statistics - bug in the left graph model ?
- Replies: 2
- Views: 3087
morphometric statistics - bug in the left graph model ?
Hi, When I apply "Morphometry statistics" to fully labeled cortical folds (from morphometry toolbox), I get proper measurements for the right hemisphere and NOT for the left one. Any measurement for every left fold is equal to 0!!! Is there something wrong with the left fold graph model, i...
- Wed Nov 12, 2008 11:33 am
- Forum: AIMS
- Topic: Graph Transfert Labels
- Replies: 1
- Views: 13204
Graph Transfert Labels
Hi, I cannot update a cortical fold graph "graph1.arg" by a modified graph version "graph2.arg". "graph1" and "graph2" have all their fold labeled. "graph1" folds have proper names except for a set of folds, say foldA foldB and foldC. I would like to...
gifti
Hi,
Is it possible to load meshes in GIFTI format in 3.1 brainvisa/anatomist release?
François
Is it possible to load meshes in GIFTI format in 3.1 brainvisa/anatomist release?
François
- Tue Apr 10, 2007 9:49 am
- Forum: BrainVISA
- Topic: SPM sn3D TO AIMS : failure : no module named pymat
- Replies: 7
- Views: 6366
Hi, Here is the matlab environnement set in the BV logbook matlabRelease = None matlabExecutable = matlab matlabOptions = -nosplash -nojvm matlabPath = ['/home/appli/Fedora-4/cartopack-linux-3.0.3-2007_01_31shfj/brainvisa/matlab', '/home/appli/Fedora-4/cartopack-linux-3.0.3-2007_01_31shfj/brainvisa/...
- Fri Apr 06, 2007 9:16 am
- Forum: BrainVISA
- Topic: SPM sn3D TO AIMS : failure : no module named pymat
- Replies: 7
- Views: 6366
SPM sn3D TO AIMS : failure : no module named pymat
Hello, I am trying to run the SPM sn3d to AIMS transformation converter. I got the following error message : "in SPM sn3d to AIMS transformation converter 1 No module named pymat" My input parameters : - read : anat00299_sn.mat - write : anat00299_sn_TO_spm_template.trm - normalized image ...
- Tue Oct 24, 2006 5:51 pm
- Forum: Anatomist
- Topic: Generating a mesh when drawing the brain outlines
- Replies: 2
- Views: 4914
Generating a mesh when drawing the brain outlines
Hi,
I have manually drawn the brain outline slice by slice with the help of the ROI tool. I saved the brain ROI in a graph format. Is there a way to generate a mesh from this graph and if so, how can I do it ?
See you,
Francois
I have manually drawn the brain outline slice by slice with the help of the ROI tool. I saved the brain ROI in a graph format. Is there a way to generate a mesh from this graph and if so, how can I do it ?
See you,
Francois
- Thu May 04, 2006 11:08 am
- Forum: Anatomist
- Topic: window synchronisation by using anatomist commands
- Replies: 3
- Views: 5770
window synchronisation by using anatomist commands
Hi, I am presently writing anatomist scripts for quick generation of snapshot images. I have two windows in referential #1, one brain in referential #2, another one in referential #3. Then I load transformation from #2 to #1 and transformation from #3 to #1. Finally, I set common camera parameters i...
- Tue May 02, 2006 9:08 am
- Forum: Anatomist
- Topic: Texture projection onto mesh file
- Replies: 2
- Views: 4772
- Fri Apr 28, 2006 5:52 pm
- Forum: Anatomist
- Topic: Texture projection onto mesh file
- Replies: 2
- Views: 4772
Texture projection onto mesh file
Hello,
Is there a way to project a texture file, eg "toto.tex" (associated with a mesh eg 'toto.mesh") onto another mesh, eg "titi.mesh" ?
francois
Is there a way to project a texture file, eg "toto.tex" (associated with a mesh eg 'toto.mesh") onto another mesh, eg "titi.mesh" ?
francois
- Mon Feb 27, 2006 6:11 pm
- Forum: Anatomist
- Topic: Saving images from many windows in a row
- Replies: 3
- Views: 4957
Saving images from many windows in a row
OK, I found the "snapshot" command and used it in a script that deals with all images. It worked fine.
Thank you for your help and the link to anatomist commands.
François
Thank you for your help and the link to anatomist commands.
François
- Wed Feb 22, 2006 5:44 pm
- Forum: Anatomist
- Topic: Saving images from many windows in a row
- Replies: 3
- Views: 4957
Saving images from many windows in a row
Hello, I understand that one can save any image from a given window through the window command menu "Window->Save Image'. However, this can be burdensome if one need to record many images from different windows. Indeed, we need to go in each window and do "Window->Save Image'. Is there any...