Search found 310 matches
- Mon Mar 08, 2010 6:21 pm
- Forum: AIMS
- Topic: AimsMesh: ima TO mesh
- Replies: 8
- Views: 20843
Re: AimsMesh: ima TO mesh
My suggestion to fusion your image with a mesh is a bit stupid because you do not have such a mesh. To build such a mesh, you may have to do some kind of segmentation before using AimsMesh.
- Mon Mar 08, 2010 6:13 pm
- Forum: AIMS
- Topic: AimsMesh: ima TO mesh
- Replies: 8
- Views: 20843
Re: AimsMesh: ima TO mesh
What is the content of your image ? Is it a binary image or an image of labels representing ROIs ? If not (for instance if your image is an MR image), you should not use AimsMesh but create a fusion object in Anatomist (for instance a Cut Mesh fusion) to combine your image and your mesh. Anyway, Ana...
- Tue Jan 26, 2010 2:55 pm
- Forum: BrainVISA
- Topic: error in import T1 with brainvisa3.2
- Replies: 14
- Views: 10954
Re: error in import T1 with brainvisa3.2
After your previous message I also fixed the mixing of "/" and "\" in file names. There are only "\" now on Windows. I attached the modified file (located in python/brainvisa/data directory) if you want to try it.
- Fri Jan 22, 2010 11:39 pm
- Forum: BrainVISA
- Topic: BrainVISA / Anatomist 3.2.0
- Replies: 4
- Views: 5793
Re: BrainVISA / Anatomist 3.2.0
Quite strange because libc is a core library of the system. I did not had any problem on Ubuntu 9.04 (now I use 9.10) but I had many package installed for the compilation of BrainVISA. Are you using a 64 bits Ubuntu version ?
- Fri Jan 22, 2010 12:04 pm
- Forum: BrainVISA
- Topic: error in import T1 with brainvisa3.2
- Replies: 14
- Views: 10954
Re: error in import T1 with brainvisa3.2
To solve the problem, you can replace two Python files in your BrainVISA directory with the ones attached to this message. Then restart BrainVISA and update your databases (including the shared database) even if BrainVISA does not ask for it. I will remind the fMRI/HRF developers that there are ques...
- Thu Jan 21, 2010 6:16 pm
- Forum: BrainVISA
- Topic: error in import T1 with brainvisa3.2
- Replies: 14
- Views: 10954
Re: error in import T1 with brainvisa3.2
Ok, I found it. A Windows specific bug had been introduced in 3.2.0 version. This is due to a wrong usage of system directory separator ("/" on Linux and MacOS but "\" on Windows) when reading database ontology (only "/" must be used here). Hopefully, we are going to re...
- Mon Jan 18, 2010 11:38 am
- Forum: Anatomist
- Topic: Convert .ucf and .dx files to Anatomist compatible files
- Replies: 2
- Views: 4851
Re: Convert .ucf and .dx files to Anatomist compatible files
Long ago I posted a message with blender plugins to import/export meshes:
http://brainvisa.info/forum/viewtopic.p ... nder#p3396
But I do not know if these plugins are stiil working with recent blender releases.
http://brainvisa.info/forum/viewtopic.p ... nder#p3396
But I do not know if these plugins are stiil working with recent blender releases.
- Mon Jan 18, 2010 11:33 am
- Forum: BrainVISA
- Topic: error in import T1 with brainvisa3.2
- Replies: 14
- Views: 10954
Re: error in import T1 with brainvisa3.2
In the error message from the process, the output file name is in "G:\laure\..." whereas the database directory you showed is in "G:\isabelle\...". This can explain the error message. But what I cannot understand, is how BrainVISA had been able to create a file name starting with...
- Sat Jan 16, 2010 3:32 pm
- Forum: BrainVISA
- Topic: error in import T1 with brainvisa3.2
- Replies: 14
- Views: 10954
Re: error in import T1 with brainvisa3.2
I suppose that you did not use the red database icon to select output file name. BrainVISA have a problem with the output file name. To find in which database to store the file, BrainVISA compares databases directory name with the begining of the output file name. If no matching database directory i...
- Thu Dec 17, 2009 11:40 am
- Forum: BrainVISA
- Topic: Major changes planned for 2010
- Replies: 0
- Views: 30442
Major changes planned for 2010
Dear all, BrainVISA core team has planned some changes for future releases. Since some of these change are major and can impact toolboxes development and usage, an agenda had already been set-up for the main releases of 2010 in order to give the opportunity for concerned people to be prepared for th...
- Wed Nov 25, 2009 4:45 pm
- Forum: BrainVISA
- Topic: BrainVISA and Mac OS X 10.6
- Replies: 12
- Views: 8775
Re: BrainVISA and Mac OS X 10.6
We do not have a recent Mac with OS X 10.6 in our lab but a collaborator will probably test the latest package on his wife laptop soon. Could you give us more information about what happen when you try to install the package ?
- Wed Nov 25, 2009 4:05 pm
- Forum: BrainVISA
- Topic: Nuclear Imaging Toolbox
- Replies: 1
- Views: 2818
Re: Nuclear Imaging Toolbox
Hi,
Unfortunately, people developping this toolbox have decided not to release it in the public BrainVISA release. I do not know if they agree to distribute it on demand. We draw their attention on your message several days ago...
Yann
Unfortunately, people developping this toolbox have decided not to release it in the public BrainVISA release. I do not know if they agree to distribute it on demand. We draw their attention on your message several days ago...
Yann
- Thu Oct 29, 2009 8:19 am
- Forum: BrainVISA
- Topic: How to export the cortical mesh
- Replies: 2
- Views: 4034
Re: How to export the cortical mesh
I do not know what formats are supported by Matlab but youy may use Gifti mesh format. There is a free library for reading this format in Matlab (included in SPM8): http://www.artefact.tk/software/matlab/gifti/ . In the current 3.1 BrainVISA release, there are processes that can be used to convert m...
- Thu Oct 15, 2009 10:28 pm
- Forum: AIMS
- Topic: series of 3D files to a 4D file
- Replies: 3
- Views: 14320
Re: series of 3D files to a 4D file
AimsTCat is probably what you are looking for.
- Mon Oct 12, 2009 5:05 pm
- Forum: BrainVISA
- Topic: 'list index out of range' when trying to use registration
- Replies: 3
- Views: 4146
Re: 'list index out of range' when trying to use registration
The process is expecting that volume_dimension attribute is a list with four values. That is not the case in your image. What is the result of AimsFileInfo on your reference image ?