error: no such table: Commissure coordinates

[ekke]

Dear BrainVisa experts,

unfortunatly I can't proceed beyond the "Prepare Subject for Anatomical Pipeline"-step since I'm allways getting the error message "no such table: Commissure coordinates ".

My data have been imported successfully into the data base:
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mr@platypus:/raid/data/BV/BVdat/NPHpat/AU46a/t1mri/mprage_std> ls -lastr
insgesamt 20516
0 drwxr-xr-x 3 mr users 80 29. Jul 10:49 ..
20500 -rw-r--r-- 1 mr users 20971520 29. Jul 10:49 AU46a.ima
4 -rw-r--r-- 1 mr users 67 29. Jul 10:49 AU46a.dim
0 drwxr-xr-x 2 mr users 104 29. Jul 10:49 registration
4 -rw-r--r-- 1 mr users 1265 29. Jul 10:49 AU46a.ima.minf
4 -rw-r--r-- 1 mr users 62 29. Jul 10:53 AU46a.APC.minf
4 -rw-r--r-- 1 mr users 259 29. Jul 10:53 AU46a.APC
0 drwxr-xr-x 3 mr users 240 29. Jul 10:53 .
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The *.APC file reads:
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mr@platypus:/raid/data/BV/BVdat/NPHpat/AU46a/t1mri/mprage_std> more AU46a.APC
AC: 80 132 122
PC: 80 154 135
IH: 77 200 85
The previous coordinates, used by the system, are defined in voxels
They stem from the following coordinates in millimeters:
ACmm: 79.9993 131.955 122.154
PCmm: 79.9993 153.932 135.222
IHmm: 77.0012 200.261 85.3283
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The error infos are:
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no such table: Commissure coordinates

OperationalError
neuroProcesses.py (1980) in _processExecution: neuroHierarchy.databases.insertDiskItem( item, update=True )
sqlFSODatabase.py (121) in insertDiskItem:
self.insertDiskItems( ( item, ), **kwargs )
sqlFSODatabase.py (1208) in insertDiskItems:
database.insertDiskItems( (diskItem,), update=update )
sqlFSODatabase.py (599) in insertDiskItems:
cursor.execute( sql, values )
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So, what's going wrong?

Any hint & help is greatly appreciated....

Best regards
Ekkehard

[riviere]

Hi,

It looks like the sqlite database file is corrupted or outdated.
Have you tried using the "update database" process (in data management) ?

Denis

[ekke]

Thanks - problem has been solved.
But - after deletion of older databases I initialized this database this morning and this was the very first entry ....?

Ekkehard