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Questions about BrainVisa usage and installation

Moderators: denghien, riviere

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joost
Posts: 86
Joined: Tue Feb 05, 2008 1:56 pm

error message

Post by joost »

Hi,

my stamp:
Linux neuro3 2.6.27.41-170.2.117.fc10.x86_64 #1 SMP Thu Dec 10 10:36:29 EST 2009 x86_64 x86_64 x86_64 GNU/Linux

my version:
BV4.1.0 (64 bits)

i'm trying to do Morphometry-->Morphometry Statistics, when i click on Morphometry Statistics no window opens and i get error output in my terminal:
Traceback (most recent call last):
File "/usr/local/brainvisa/brainvisa/neuroProcessesGUI.py", line 2270, in openProcess

File "/usr/local/brainvisa/brainvisa/neuroProcessesGUI.py", line 1747, in showProcess

File "/usr/local/brainvisa/brainvisa/neuroProcesses.py", line 2869, in getProcessInstance
result = result()
File "/usr/local/brainvisa/brainvisa/neuroProcesses.py", line 654, in __init__
Parameterized.__init__( self, self.signature.shallowCopy())
File "/usr/local/brainvisa/brainvisa/neuroProcesses.py", line 345, in __init__
self.initialization()
File "/neurospin/brainvisa/build/Mandriva-2008.0-x86_64/bug_fix/brainvisa/toolboxes/morphometry/processes/morphometry.py", line 123, in initialization
File "/usr/local/brainvisa/brainvisa/neuroProcesses.py", line 424, in __setattr__
self.setValue( name, value )
File "/usr/local/brainvisa/brainvisa/neuroProcesses.py", line 438, in setValue
newValue = self.signature[ name ].findValue( value )
File "/neurospin/brainvisa/build/Mandriva-2008.0-x86_64/bug_fix/python/brainvisa/data/readdiskitem.py", line 216, in findValue
File "/neurospin/brainvisa/build/Mandriva-2008.0-x86_64/bug_fix/python/brainvisa/data/sqlFSODatabase.py", line 1428, in getDiskItemFromFileName
File "/neurospin/brainvisa/build/Mandriva-2008.0-x86_64/bug_fix/python/brainvisa/data/sqlFSODatabase.py", line 815, in getDiskItemFromFileName
File "/neurospin/brainvisa/build/Mandriva-2008.0-x86_64/bug_fix/python/soma/path.py", line 95, in relative_path
TypeError: join() takes at least 1 argument (0 given)

when i install BrainVisa 3.2 on my system and i click on Morphometry Statistics i do not get an error. what can i do to make it work in version 4.1.0?

merci,
-joost
denghien
Posts: 209
Joined: Mon Apr 05, 2004 1:35 pm
Location: IFR49 / SHFJ Orsay
Contact:

Re: error message

Post by denghien »

Hi,

Have you ever used this process before with this version of BrainVISA or it is the first time that you want to launch it ?

Have you the same thing with another process, for example the Morphologist Pipeline ?

Isa
joost
Posts: 86
Joined: Tue Feb 05, 2008 1:56 pm

Re: error message

Post by joost »

Hi,

1st time i use it (in version 4.1.0).

no, other processes such as Morphologist work fine.

i have exactly the same (same error message) problem on Linux joost-laptop 2.6.35-28-generic #49-Ubuntu SMP Tue Mar 1 14:39:03 UTC 2011 x86_64 GNU/Linux

merci,
-joost
User avatar
riviere
Site Admin
Posts: 1361
Joined: Tue Jan 06, 2004 12:21 pm
Location: CEA NeuroSpin, Saint Aubin, France
Contact:

Re: error message

Post by riviere »

Hi,
Are your database up to date ? Could you perform a database update before retrying ?
Denis
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