Error in Prepare Subject for Anatomical Pipeline

Questions about BrainVisa usage and installation

Moderators: denghien, riviere

Post Reply
artist0125
Posts: 3
Joined: Sat Sep 15, 2012 7:05 pm

Error in Prepare Subject for Anatomical Pipeline

Post by artist0125 »

Hi,

I got this error in the "Prepare Subject for Anatomical Pipeline" module.
The input image is T1mrI in .nii format output by the "import T1 MRI" module

----------------------------------------------------------
in Prepare Subject for Anatomical Pipeline 6 Cannot convert format NIFTI-1 image to format TIFF(.tif) image for parameter T1mri


Exception
processes.py (2120) in _processExecution:
?
processes.py (2110) in _getConvertedValue:
?
----------------------------------------------------------

Does anyone have any idea?

Thanks!
-Zhen
denghien
Posts: 209
Joined: Mon Apr 05, 2004 1:35 pm
Location: IFR49 / SHFJ Orsay
Contact:

Re: Error in Prepare Subject for Anatomical Pipeline

Post by denghien »

Hi,

In fact, if the input image is a .nii format, I don't know why it tries to convert into tiff.
Could you post a snapshot ?

Thanks,

Isa
User avatar
riviere
Site Admin
Posts: 1361
Joined: Tue Jan 06, 2004 12:21 pm
Location: CEA NeuroSpin, Saint Aubin, France
Contact:

Re: Error in Prepare Subject for Anatomical Pipeline

Post by riviere »

Could you post a snapshot ?
or a log file...
Denis
artist0125
Posts: 3
Joined: Sat Sep 15, 2012 7:05 pm

Re: Error in Prepare Subject for Anatomical Pipeline

Post by artist0125 »

Hi,
Attached is the snapshot.
Thanks.
-Zhen
error snapshot
error snapshot
error_snapshot.png (92.06 KiB) Viewed 7730 times
User avatar
riviere
Site Admin
Posts: 1361
Joined: Tue Jan 06, 2004 12:21 pm
Location: CEA NeuroSpin, Saint Aubin, France
Contact:

Re: Error in Prepare Subject for Anatomical Pipeline

Post by riviere »

Well, the snapshot does not really help to understand what went wrong. Could you please provide the log file ?
Denis
artist0125
Posts: 3
Joined: Sat Sep 15, 2012 7:05 pm

Re: Error in Prepare Subject for Anatomical Pipeline

Post by artist0125 »

Sorry. Is this the log file that can help?

Thanks,
-Zhen
Attachments
brainvisa2.log
(150.57 KiB) Downloaded 371 times
denghien
Posts: 209
Joined: Mon Apr 05, 2004 1:35 pm
Location: IFR49 / SHFJ Orsay
Contact:

Re: Error in Prepare Subject for Anatomical Pipeline

Post by denghien »

Hi,

I've looked at your log and I suggest that you check a few points :
-> Can you visualize correctly the following data "../experiments/bv_database2/prot1/OAS1_0001_orig_001/t1mri/acq1/normalized_norm1_OAS1_0001_orig_001.nii" by clicking on the eye in the brainvisa GUI ?
-> Have you selected this data by clicking on the red button or have you written manually this parameter ?
-> Could you send me the list of files of the database directory (bv_database2 directroy) ? It seems that the database is locked ....

Thanks,
Isa
Post Reply