install on Ubuntu 16.04.2 LTS
Posted: Thu Mar 02, 2017 3:40 pm
Hi,
I'm trying to get brainvisa working on Ubuntu Xenial. in my .bashrc i have:
function brainvisa_setup
{
. /opt/brainvisa/bin/bv_env.sh /opt/brainvisa
}
when i start brainvisa the update database window frame opens, but then hangs. i see no python rubbing in my 'top'. this is the on screen output:
Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 72: non-double matrix element
Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 72: non-double matrix element
Fontconfig warning: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 80: saw unknown, expected number
Fontconfig warning: "/etc/fonts/conf.d/11-lcdfilter-default.conf", line 14: invalid constant used : lcddefault
Loading toolbox brainrat
Loading toolbox connectomist
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox datamind
Loading toolbox freesurfer
Loading toolbox morphologist
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is '/home/jjanssen/.brainvisa/brainvisa10.log'
Database /opt/brainvisa/share/brainvisa-share-4.5 must be updated because the
database file is too old.
/opt/brainvisa/brainvisa/toolboxes/cortical_surface/processes/functional/misc/projAverageVolumes.py: inconsistent use of tabs and spaces in indentation
/opt/brainvisa/brainvisa/toolboxes/morphologist/processes/Sulci/Recognition/recognition_error.py: inconsistent use of tabs and spaces in indentation
/usr/share/fsl/5.0/data: parse directories and insert items
/usr/share/fsl/5.0/data: 4 files are stored as 4 DiskItems in 0 seconds
ICE default IO error handler doing an exit(), pid = 7037, errno = 32
my python version is 2.7.3 (for what its worth)
any pointers?
merci
I'm trying to get brainvisa working on Ubuntu Xenial. in my .bashrc i have:
function brainvisa_setup
{
. /opt/brainvisa/bin/bv_env.sh /opt/brainvisa
}
when i start brainvisa the update database window frame opens, but then hangs. i see no python rubbing in my 'top'. this is the on screen output:
Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 72: non-double matrix element
Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 72: non-double matrix element
Fontconfig warning: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 80: saw unknown, expected number
Fontconfig warning: "/etc/fonts/conf.d/11-lcdfilter-default.conf", line 14: invalid constant used : lcddefault
Loading toolbox brainrat
Loading toolbox connectomist
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox datamind
Loading toolbox freesurfer
Loading toolbox morphologist
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is '/home/jjanssen/.brainvisa/brainvisa10.log'
Database /opt/brainvisa/share/brainvisa-share-4.5 must be updated because the
database file is too old.
/opt/brainvisa/brainvisa/toolboxes/cortical_surface/processes/functional/misc/projAverageVolumes.py: inconsistent use of tabs and spaces in indentation
/opt/brainvisa/brainvisa/toolboxes/morphologist/processes/Sulci/Recognition/recognition_error.py: inconsistent use of tabs and spaces in indentation
/usr/share/fsl/5.0/data: parse directories and insert items
/usr/share/fsl/5.0/data: 4 files are stored as 4 DiskItems in 0 seconds
ICE default IO error handler doing an exit(), pid = 7037, errno = 32
my python version is 2.7.3 (for what its worth)
any pointers?
merci