Anatomist could not load .arg or certain .bck files
Posted: Sat Dec 08, 2018 9:09 pm
Hello,
I wrote a script to run morphologist on some brains from the command line, and I am now trying to view the resulting sulci graph (*.arg). The anatomist application stops responding after, and I figured something was wrong with the .data files. I could individually load all the .bck files from the .data folder, except for ss_Bucket.bck and plidepassage_Bucket.bck, and when I delete these files, I am able to now view the *.arg sulci graph (however, some of the buckets I expected to have values did not when viewing this image, presumably from the deleted .bck files).
Why is it that these two .bck files are not able to load in anatomist? I have not had trouble viewing these in the past with other datasets, so I feel it is not anatomist but rather something about these two .bck files that is wrong. I ran Brainvisa using axon-runprocess --enabled from the command line, and the last part of my script clears out all other morphologist output files except for those typically necessary to view sulci graphs (*.arg, *.arg.minf, *.data). Could it be that moving around these files somehow corrupted them? I'm not sure what is going on here. Any help will be greatly appreciated.
Thank you,
Will
I wrote a script to run morphologist on some brains from the command line, and I am now trying to view the resulting sulci graph (*.arg). The anatomist application stops responding after, and I figured something was wrong with the .data files. I could individually load all the .bck files from the .data folder, except for ss_Bucket.bck and plidepassage_Bucket.bck, and when I delete these files, I am able to now view the *.arg sulci graph (however, some of the buckets I expected to have values did not when viewing this image, presumably from the deleted .bck files).
Why is it that these two .bck files are not able to load in anatomist? I have not had trouble viewing these in the past with other datasets, so I feel it is not anatomist but rather something about these two .bck files that is wrong. I ran Brainvisa using axon-runprocess --enabled from the command line, and the last part of my script clears out all other morphologist output files except for those typically necessary to view sulci graphs (*.arg, *.arg.minf, *.data). Could it be that moving around these files somehow corrupted them? I'm not sure what is going on here. Any help will be greatly appreciated.
Thank you,
Will