Obtaining a nobias image?

Questions about BrainVisa usage and installation

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Yasser_Aleman
Posts: 10
Joined: Fri Oct 15, 2004 5:07 pm
Location: Cuban Neuroscience Center

Obtaining a nobias image?

Post by Yasser_Aleman »

Hi everyone:

How can I obtain a nobias image from an original one using brainvisa?

Any help that you can give me will be a lot of help for me

Regards
Yasser
Manik
Posts: 99
Joined: Fri Mar 05, 2004 1:00 pm
Location: INSERM U836, Grenoble

Post by Manik »

You should use the process in anatomy --> shfj-low-level --> VipBiasCorrection
You must be in the advanced level (preferences).
Or you should run the whole anatomy pipeline in anatomy --> pipeline using the documentation on Brainvisa website.
Manik Bhattacharjee
INSERM U836
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Jean-Francois Mangin
Posts: 337
Joined: Mon Mar 01, 2004 10:24 am
Location: Neurospin, CEA, France
Contact:

Post by Jean-Francois Mangin »

Well,

if you have a T1 image, just use the Bias Correction process of pipeline 05,
which is I think the most robust.

If it is something else, well, you can play with the low level process like Manik suggests,
or even with the commandline to have access to more parameters.
Be aware, however, that the default parameters are tune to T1 images
of the brain...
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