ROI mask output does not keep matrices of nifti file
Posted: Thu Apr 18, 2013 5:47 pm
Hi,
a colleague trying to segment a lesion on an T1 MRI (nifti file) using Anatomist ROI module and exporting the resulting mask as nifti was unable to view it in SPM alongside the T1 with a synchronized cursor.
It seems the problem is that exporting a ROI as a mask does not keep the geometrical transformations from the source image's header (scanner-based referential).
Is there a way to get Anatomist to copy the transformations to the mask ?
a colleague trying to segment a lesion on an T1 MRI (nifti file) using Anatomist ROI module and exporting the resulting mask as nifti was unable to view it in SPM alongside the T1 with a synchronized cursor.
It seems the problem is that exporting a ROI as a mask does not keep the geometrical transformations from the source image's header (scanner-based referential).
Is there a way to get Anatomist to copy the transformations to the mask ?