accessing hip hop 2D coordinate spaces via python api
Posted: Sat May 02, 2015 7:14 am
Dear List,
I am in need of a little assistance working with the outputs of the 'hip-hop' toolbox.
I have run some brains through the pipeline and now have the 'rectangular_flat' and other .gii files.
However I'm a little uncertain now as to the format of the outputs and how I can use them.
In particular, I would like to know how to access the spherical and polar coordinate space representations and how to identify corresponding xyz locations/vertices for these spaces. I am looking to project data from custom data structures and also from nifti fMRI images on to these 2D representations. I would prefer to do this via the pyanatomist scripting api rather than the gui if possible.
If, for example, someone could show me how to generate something similar to the 2D projection figures in the Auzias et al. Hip-Hop paper via the python api, that would be extremely helpful.
Many thanks,
John
I am in need of a little assistance working with the outputs of the 'hip-hop' toolbox.
I have run some brains through the pipeline and now have the 'rectangular_flat' and other .gii files.
However I'm a little uncertain now as to the format of the outputs and how I can use them.
In particular, I would like to know how to access the spherical and polar coordinate space representations and how to identify corresponding xyz locations/vertices for these spaces. I am looking to project data from custom data structures and also from nifti fMRI images on to these 2D representations. I would prefer to do this via the pyanatomist scripting api rather than the gui if possible.
If, for example, someone could show me how to generate something similar to the 2D projection figures in the Auzias et al. Hip-Hop paper via the python api, that would be extremely helpful.
Many thanks,
John