problem of interaction between Anatomist and Brainvisa

[quere]

HI!
I have a problem with anatomist. In fact when I launch a function like 'Ana to all ...' for exemple. And when I click on the eye to visualize, the toolbox Anatomist appears but I am obliged to go to search the image with the hand.
Could you help me please?
Thanks
Aurélie

[denghien]

Hello,


It is strange thing ... which is your OS and numbre version of pakeatge ?
Always or sometimes ?
Can you try a very simple process like 'Viewers -> Automatic -> Anatomis Show volume "?

Isa

[quere]

Hello

I work on Windows XP family and my packtage is SHFJ_pack-stable-win32-2.3.5. I have ever tried 'Anatomis Show volume' but it is the same...

So what can I do?

[riviere]

Hmmm, this could look like a communication problem between BV and Anatomist. Some people have already experienced such strange things, and I'm not sure we have found a rational explanation in every case. Anyway in some cases at least it was related to strange (or incorrect) network settings on the machine.

Can you check the log in brainvisa and see in the "communications with anatomist" section if commands were actually sent to anatomist ? And you can send us a logfile (using the "support/bug report" menu in BV) so we can try to understand.

Denis

[quere]

Hi!

I send you my Brainvisa.log, because I tried to sent it to support@brainvisa.info but I have an error message like this:

SMTPServerDisconnected: Connection unexpectedly closed

neuroConfigGUI.py (558) in _ok: s = smtplib.SMTP( neuroConfig.SMTP_server_name )
smtplib.py (240) in __init__:
(code, msg) = self.connect(host, port)
smtplib.py (303) in connect:
(code, msg) = self.getreply()
smtplib.py (347) in getreply:
raise SMTPServerDisconnected("Connection unexpectedly closed")


So this is my Brainvisa.log

BrainVISA 1.6.3
Command line
"C:\SHFJ_pack-stable-win32-2.3.5\brainvisa\BrainVISA"
Environment variables
TMP = C:\DOCUME~1\Lili\LOCALS~1\Temp
COMPUTERNAME = LILIE
USERDOMAIN = LILIE
COMMONPROGRAMFILES = C:\Program Files\Fichiers communs
PROCESSOR_IDENTIFIER = x86 Family 15 Model 4 Stepping 1, GenuineIntel
PROGRAMFILES = C:\Program Files
PROCESSOR_REVISION = 0401
SYSTEMROOT = C:\WINDOWS
PATH = C:\SHFJ_pack-stable-win32-2.3.5\bin\commands-links;C:\SHFJ_pack-stable-win32-2.3.5\lib;C:\SHFJ_pack-stable-win32-2.3.5\python;C:\SHFJ_pack-stable-win32-2.3.5\python\DLLs;C:\SHFJ_pack-stable-win32-2.3.5\bin\commands-links;C:\SHFJ_pack-stable-win32-2.3.5\bin;C:\texmf\miktex\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\ATI Technologies\ATI Control Panel;C:\MATLAB7\bin\win32;
LANGUAGE = en
DCMDICTPATH = C:\SHFJ_pack-stable-win32-2.3.5\lib\dicom.dic
PROCESSOR_ARCHITECTURE = x86
SHFJ_SHARED_PATH = C:\SHFJ_pack-stable-win32-2.3.5\share
ALLUSERSPROFILE = C:\Documents and Settings\All Users
SESSIONNAME = Console
HOMEPATH = \Documents and Settings\Lili
USERNAME = Lili
LOGONSERVER = \\LILIE
PROMPT = $P$G
COMSPEC = C:\WINDOWS\system32\cmd.exe
PYTHONPATH = C:\SHFJ_pack-stable-win32-2.3.5\python\Lib\site-packages\win32;C:\SHFJ_pack-stable-win32-2.3.5\python\Lib\site-packages\win32\lib
PATHEXT = .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH
FP_NO_HOST_CHECK = NO
WINDIR = C:\WINDOWS
TEMP = C:\DOCUME~1\Lili\LOCALS~1\Temp
HOMEDRIVE = C:
SYSTEMDRIVE = C:
PYTHONHOME = C:\SHFJ_pack-stable-win32-2.3.5\python
NUMBER_OF_PROCESSORS = 2
APPDATA = C:\Documents and Settings\Lili\Application Data
PROCESSOR_LEVEL = 15
OS = Windows_NT
USERPROFILE = C:\Documents and Settings\Lili
BrainVISA options
platform = windows
gui = 1
sessionID = neuro276
userProfile = None
optionFile = C:\Documents and Settings\Lili\.brainvisa\options.py
logFileName = C:\Documents and Settings\Lili\.brainvisa\brainvisa.log
temporaryDirectory = C:\DOCUME~1\Lili\LOCALS~1\Temp
mainPath = C:\SHFJ_pack-stable-win32-2.3.5\brainvisa
iconPath = C:\SHFJ_pack-stable-win32-2.3.5\brainvisa\icons
typesPath = ['C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\types', 'C:/users/types']
dataPath = [('C:\\SHFJ_pack-stable-win32-2.3.5\\share\\shfj', 'C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\sharedHierarchy.py'), ('C:\\users\\brainvisa\\brainvisaData', 'C:/users/brainvisa/brainvisaData/hierarchy.py')]
processesPath = ['C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\processes', 'C:/users/processes']
mainDocPath = C:\SHFJ_pack-stable-win32-2.3.5\brainvisa\doc
docPath = C:\SHFJ_pack-stable-win32-2.3.5\brainvisa\doc\en
anatomistExecutable = anatomist
matlabExecutable = matlab -nosplash -nojvm
matlabPath = ['C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\matlab', 'C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\matlab\\LoadSave', 'C:\\SHFJ_pack-stable-win32-2.3.5\\brainvisa\\matlab\\mesh']
matlabStartup = []
logFileName = C:\Documents and Settings\Lili\.brainvisa\brainvisa.log
language = en
userLevel = 2
showSplashScreen = 1
startup = ['splash()']
supportEmail = support@brainvisa.info
SMTP_server_name = localhost
flatHierarchy = C:\SHFJ_pack-stable-win32-2.3.5\brainvisa\shfjFlatHierarchy.py
textEditor = notepadw


Aurélie

[riviere]

Well, the "send mail" feature doesn't work for you... is your machine connected to the internet ?
Oh yes I see (from your log): you must fill in the "SMTP_server_name" option in the "support" tab of the settings before BV can send emails: it must know the mail server to use (also fill in your address in "userEmail").

If it still doesn't work, send the log file "by hand": you will find it in C:\Documents and Settings\Lili\.brainvisa\brainvisa.log after you have closed brainvisa (it's important to close BV otherwise the log file may be split into several files and not complete)
Send it to the support mail address.
Here the log you copied is incomplete: I cannot see the anatomist section.

Denis

[quere]

ok thank you very for your help
Aurelie