dynamic.h

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#ifndef AIMSALGO_REGISTRATION_PREPROCESSING_H
#define AIMSALGO_REGISTRATION_PREPROCESSING_H

#include <cartodata/volume/volume.h>
#include <vector>

namespace aims {


  template <typename T>
  carto::VolumeRef<T> clipDynamic( const carto::VolumeRef<T> & in,
                                   bool flatten_mask = true,
                                   float pct_kept = 1. );

  template <typename T>
  carto::VolumeRef<T> clipDynamic( carto::VolumeRef<T> & in,
                                   bool  flatten_mask = true,
                                   float pct_kept = 1.,
                                   bool  in_place = true );

#if 0 // TODO


  template <typename T>
  std::vector<T> percentile( const carto::VolumeRef<T> & in,
                             const std::vector<float> & pct,
                             bool interpolate = true,
                             int histo_bins = 0 );

  T percentile( const carto::VolumeRef<T> & in,
                const float & pct,
                bool interpolate = true,
                int histo_bins = 0 );

#endif


  template <typename T>
  carto::VolumeRef<T> clip( const carto::VolumeRef<T> & in,
                            const T & min, const T & max );

  template <typename T>
  carto::VolumeRef<T> clip( carto::VolumeRef<T> & in,
                            const T & min, const T & max,
                            bool in_place = false );

} // namespace aims

#endif // AIMSALGO_REGISTRATION_PREPROCESSING_H