aimsalgo 6.0.0
Neuroimaging image processing
bucketblob.h
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33
34
35#ifndef AIMS_SCALESPACE_BUCKETBLOB_H
36#define AIMS_SCALESPACE_BUCKETBLOB_H
37
38#include <aims/bucket/bucket.h>
39#include <aims/connectivity/connectivity.h>
40
41
42namespace aims
43{
44
47 template <typename T>
49 {
50 public:
52 {
53 BlobStruct() : newblobnum( 0 ), keepallblobs( false ), background( -10 )
54 {}
57 std::map<int, int> mergemap;
58 // value in this map is the merge position
59 std::map<int, Point3d> deadblobs;
62 };
63
65 {
66 public:
67 virtual ~StopCriterion() {}
68#if __GNUC__ == 3 && __GNUC_MINOR__ == 2 // bug in gcc 3.2 (mingw)
69 virtual bool stops( const Point3d &, const BlobStruct & bs ) {}
70#else
71 virtual bool stops( const Point3d &, const BlobStruct & bs ) = 0;
72#endif
73 virtual bool doesKeepBlob( int, const BlobStruct & ) { return true; }
74 };
75
77 {
78 public:
79 virtual ~NoStopCriterion() {}
80 virtual bool stops( const Point3d &, const BlobStruct & )
81 { return false; }
82 };
83
85 {
86 public:
88 ( const std::set<Point3d, BucketMapLess> & toJoin );
90 virtual bool stops( const Point3d &, const BlobStruct & bs );
91 virtual bool doesKeepBlob( int blob, const BlobStruct & );
92
93 std::set<Point3d, BucketMapLess> pointsToJoin;
95 };
96
97
99 {
100 public:
101 virtual ~BlobsMerger();
102 virtual void merge( const std::set<int> & tomerge, BlobStruct & bs,
103 const Point3d & p );
104 };
105
106
108 {
109 public:
111 virtual ~GLBlobsMerger();
112 virtual void merge( const std::set<int> & tomerge, BlobStruct & bs,
113 const Point3d & p );
114 };
115
116
117 BucketBlobExtractor( StopCriterion* sc, bool minima,
118 bool keepallblobs = false, BlobsMerger* m = 0 );
120
126 BucketMap<Void> *extractBlobs( const BucketMap<T> & valuemap );
127
128 protected:
129 void neighborBlobs( std::set<int> &, const Point3d &, const BlobStruct & );
130
136 };
137
138
139 extern template class BucketBlobExtractor<float>;
140
141}
142
143#endif
144
145
146
virtual void merge(const std::set< int > &tomerge, BlobStruct &bs, const Point3d &p)
virtual void merge(const std::set< int > &tomerge, BlobStruct &bs, const Point3d &p)
virtual bool stops(const Point3d &, const BlobStruct &)
Definition bucketblob.h:80
virtual bool stops(const Point3d &, const BlobStruct &bs)
std::set< Point3d, BucketMapLess > pointsToJoin
Definition bucketblob.h:93
virtual bool doesKeepBlob(int blob, const BlobStruct &)
OneComponentStopCriterion(const std::set< Point3d, BucketMapLess > &toJoin)
virtual bool stops(const Point3d &, const BlobStruct &bs)=0
virtual bool doesKeepBlob(int, const BlobStruct &)
Definition bucketblob.h:73
Blobs and watershed.
Definition bucketblob.h:49
BucketMap< Void > * extractBlobs(const BucketMap< T > &valuemap)
Extracts blobs or watershed.
void neighborBlobs(std::set< int > &, const Point3d &, const BlobStruct &)
BucketBlobExtractor(StopCriterion *sc, bool minima, bool keepallblobs=false, BlobsMerger *m=0)
Connectivity::Type _connectivity
Definition bucketblob.h:135
StopCriterion * _stop
Definition bucketblob.h:131
Connectivity::Type connectivity() const
Definition bucketblob.h:122
void setConnectivity(Connectivity::Type t)
Definition bucketblob.h:121
std::map< int, Point3d > deadblobs
Definition bucketblob.h:59
AimsVector< int16_t, 3 > Point3d