aimsalgo 6.0.0
Neuroimaging image processing
interpolatedvolume.h
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33#ifndef AIMS_INTERPOLATION_INTERPOLATEDVOLUME_H
34#define AIMS_INTERPOLATION_INTERPOLATEDVOLUME_H
35
36//--- aims -------------------------------------------------------------------
37#include <cartodata/volume/volume.h> // Volume
38#include <aims/math/bspline.h> // aims::TabulBSpline
39#include <aims/vector/vector.h> // Point*
40//--- cartodata --------------------------------------------------------------
41#include <cartodata/volume/volume.h> // carto::VolumeRef
42//--- cartobase --------------------------------------------------------------
43#include <cartobase/smart/rcptr.h> // carto::rc_ptr
44//----------------------------------------------------------------------------
45
46namespace aims {
47
48 //==========================================================================
49 //
50 // CONTINUOUS VOLUME
51 //
52 //==========================================================================
56 {
57 public:
61
69 template <typename T>
70 InterpolatedVolume( const carto::Volume<T> & vol, unsigned order = 3 );
72 template <typename T>
73 InterpolatedVolume( const carto::VolumeRef<T> & vol, unsigned order = 3 );
83
86 double at( double x, double y = 0., double z = 0., long t = 0 ) const;
87 Vector derivative( double x, double y = 0., double z = 0., long t = 0 ) const;
88 Matrix nderivative( unsigned n, double x, double y = 0., double z = 0., long t = 0 ) const;
89 // aliases
90 double operator() ( double x, double y = 0., double z = 0., long t = 0 ) const;
91 Vector der( double x, double y = 0., double z = 0., long t = 0 ) const;
92 Matrix der2( double x, double y = 0., double z = 0., long t = 0 ) const;
93 Matrix der3( double x, double y = 0., double z = 0., long t = 0 ) const;
95
98 double atMm( double x, double y = 0., double z = 0., long t = 0 ) const;
99 Vector derivativeMm( double x, double y = 0., double z = 0., long t = 0 ) const;
100 Matrix nderivativeMm( unsigned n, double x, double y = 0., double z = 0., long t = 0 ) const;
101 // aliases
102 Vector derMm( double x, double y = 0., double z = 0., long t = 0 ) const;
103 Matrix der2Mm( double x, double y = 0., double z = 0., long t = 0 ) const;
104 Matrix der3Mm( double x, double y = 0., double z = 0., long t = 0 ) const;
105 // dimension
106 double getSizeXMm() const;
107 double getSizeYMm() const;
108 double getSizeZMm() const;
110
114 const carto::PropertySet & header() const;
115 double getSizeX() const;
116 double getSizeY() const;
117 double getSizeZ() const;
118 long getSizeT() const;
120
123 template <typename T>
124 void setVolume( const carto::Volume<T> & vol, int order = -1 );
125 template <typename T>
126 void setVolume( const carto::VolumeRef<T> & vol, int order = -1 );
128
131 template <typename T>
132 void setCoeff( const carto::Volume<T> & vol, int order = -1 );
133 template <typename T>
134 void setCoeff( const carto::VolumeRef<T> & vol, int order = -1 );
136
140 unsigned order() const;
142 bool empty() const;
153
159
160 protected:
161 unsigned _order;
164 };
165
166} // namespace aims
167
168#endif // AIMS_INTERPOLATION_INTERPOLATEDVOLUME_H
InterpolatedVolume & operator=(const InterpolatedVolume &other)
Assignment by copy (underlying data is fully copied and not shared between the volumes)
Matrix der2(double x, double y=0., double z=0., long t=0) const
double getSizeYMm() const
Vector derivative(double x, double y=0., double z=0., long t=0) const
double operator()(double x, double y=0., double z=0., long t=0) const
double getSizeZMm() const
const carto::VolumeRef< double > & coefficients() const
carto::VolumeRef< double > Matrix
double at(double x, double y=0., double z=0., long t=0) const
Access interpolated values.
double getSizeXMm() const
Matrix der3(double x, double y=0., double z=0., long t=0) const
InterpolatedVolume()
Constructors / Destructors / CopyDefault constructor: allocates no data.
Matrix nderivative(unsigned n, double x, double y=0., double z=0., long t=0) const
Matrix der2Mm(double x, double y=0., double z=0., long t=0) const
unsigned order() const
ParametersInterpolation order.
Matrix der3Mm(double x, double y=0., double z=0., long t=0) const
Vector derivativeMm(double x, double y=0., double z=0., long t=0) const
void setCoeff(const carto::Volume< T > &vol, int order=-1)
Change coefficient volume.
carto::VolumeRef< double > & coefficients()
Access to coefficients.
Vector der(double x, double y=0., double z=0., long t=0) const
void setRecursiveMode()
Recursive/Fast/Tabular mode (default is Fast)
void setTabularMode()
Recursive/Fast/Tabular mode (default is Fast)
double getSizeZ() const
virtual ~InterpolatedVolume()
Destructor.
carto::rc_ptr< BSpline > _spline
const carto::PropertySet & header() const
bool empty() const
Is the volume empty (true if only default constructed)
double atMm(double x, double y=0., double z=0., long t=0) const
Access interpolated values in mm.
carto::VolumeRef< double > _coeff
void setFastMode()
Recursive/Fast/Tabular mode (default is Fast)
void setVolume(const carto::Volume< T > &vol, int order=-1)
Change interpolated volume.
double getSizeY() const
Matrix nderivativeMm(unsigned n, double x, double y=0., double z=0., long t=0) const
InterpolatedVolume(const InterpolatedVolume &other)
Copy constructor (underlying data is fully copied and not shared between the volumes)
double getSizeX() const
Vector derMm(double x, double y=0., double z=0., long t=0) const
carto::PropertySet & header()
Header / Dimension.
AimsVector< double, 3 > Point3dd