wavefrontmeshR.h

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#ifndef AIMS_IO_WAVEFRONTMESHR_H
#define AIMS_IO_WAVEFRONTMESHR_H
 
#include <aims/data/pheader.h>
#include <aims/io/datatypecode.h>
#include <aims/io/wavefrontheader.h>
#include <aims/io/reader.h>
#include <aims/rgb/rgb.h>
#include <cartodata/volume/volume.h>
#include <cartobase/exception/file.h>
#include <cartobase/exception/format.h>
#include <cartobase/stream/fileutil.h>
 
#include <aims/mesh/texture.h>
#include <aims/io/writer.h>
 
#include <soma-io/utilities/asciidatasourcetraits.h>
#include <soma-io/datasource/streamdatasource.h>
#include <soma-io/datasource/filedatasource.h>
#include <cartobase/exception/ioexcept.h>
 
 
namespace
{
 
  template <typename T>
  class _readTexture
  {
  public:
    inline static void r( std::istream & s, T & tex )
    {
      s >> tex;
    }
  };
 
 
  template <typename T, int D>
  class _readTexture<AimsVector<T, D> >
  {
  public:
    inline static
    void r( std::istream & s, AimsVector<T, D> & tex )
    {
      int i;
      for( i=0; i<3 && i<D; ++i )
      {
        s >> tex[i];
      }
      for( ; i<D; ++i )
        tex[i] = 0;
    }
  };
 
}
 
namespace aims
{
 
  template<long D, typename T>
  class WavefrontMeshReader
  {
  public:
    WavefrontMeshReader( const std::string& name ) : _name( name ) {}
    ~WavefrontMeshReader() {}
 
    void read( AimsTimeSurface<D,T>& thing,
               const carto::AllocatorContext & context,
               carto::Object options );
 
  private:
    void storeMesh( AimsTimeSurface<D,T> & thing,
                    const std::vector<Point3df> & vertices,
                    const std::vector<Point3df> &normals,
                    const std::vector<AimsVector<uint, D> > & polygons,
                    const std::vector<T> & texture,
                    const std::vector<int> & normals_ind,
                    const std::vector<int> & texture_ind, int timestep );
    inline static
    carto::Object readMtlFle( std::string & mtl_filename );
    inline static
    void setMtl( carto::Object mtl_dict, const std::string & mtl_objname,
                 PythonHeader & hdr );
 
    std::string         _name;
  };
 
 
  template <long D, typename T>
  inline WavefrontMeshReader<D,T> &
  operator >> ( WavefrontMeshReader<D,T> & reader,
                AimsTimeSurface<D,T> & thing )
  {
    reader.read( thing, thing.allocator(),
                 carto::Object::value( carto::PropertySet() ) );
    return reader;
  }
 
 
  template <long D, typename T>
  inline
  carto::Object WavefrontMeshReader<D,T>::readMtlFle(
    std::string & mtl_filename )
  {
    carto::Object mtl_dict = carto::Object::value( carto::Dictionary() );
 
    std::ifstream ms( mtl_filename.c_str() );
    if( !ms )
    {
      std::cerr << "warning: could not open " << mtl_filename << std::endl;
      return mtl_dict;
    }
 
    ms.setf( std::ios::skipws );
    soma::IStreamDataSource ds( ms );
    int line = 0;
    carto::Object current_obj;
    carto::Object current_mat;
    std::string l, element, objname;
    int timestep = -1;
 
    while( ds && !ds.eof() )
    {
      if( !soma::StreamUtil::getline( ds, l ) )
      {
        if( ds.eof() )
          break;
        else
        {
          std::cerr << "warning: could read " << mtl_filename << ", line "
            << line + 1 << std::endl;
          return mtl_dict;
        }
      }
      ++line;
 
      if( l.empty() || l[0] == '#' )
        continue;
 
      std::stringstream s( l );
      s >> element;
 
      if( element == "newmtl" )
      {
        objname = l.substr( s.tellg(), l.length() - s.tellg() );
        size_t i = 0;
        while( !objname.empty() && objname[i] == ' ' )
          ++i;
        objname = objname.substr( i, objname.length() - i );
        ++timestep;
        current_obj = carto::Object::value( carto::Dictionary() );
        mtl_dict->setProperty( objname, current_obj );
        current_mat = carto::Object::value( carto::Dictionary() );
        current_obj->setProperty( "material", current_mat );
      }
      else if( element == "Ka" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        std::vector<float> ambient( 3 );
        s >> ambient[0] >> ambient[1] >> ambient[2];
        current_mat->setProperty( "ambient", ambient );
      }
      else if( element == "Ke" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        std::vector<float> emission( 3 );
        s >> emission[0] >> emission[1] >> emission[2];
        current_mat->setProperty( "emission", emission );
      }
      else if( element == "Kd" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        std::vector<float> diffuse( 4, 1. );
        if( current_mat->getProperty( "diffuse", diffuse ) )
          while( diffuse.size() < 4 )
            diffuse.push_back( 1. );
        s >> diffuse[0] >> diffuse[1] >> diffuse[2];
        current_mat->setProperty( "diffuse", diffuse );
      }
      else if( element == "Ks" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        std::vector<float> specular( 3 );
        s >> specular[0] >> specular[1] >> specular[2];
        current_mat->setProperty( "specular", specular );
      }
      else if( element == "Ns" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        float ns;
        s >> ns;
        current_mat->setProperty( "shininess", ns );
      }
      else if( element == "d" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        float a;
        s >> a;
        std::vector<float> diffuse( 4, 0.8 );
        if( current_mat->getProperty( "diffuse", diffuse ) )
          while( diffuse.size() < 4 )
            diffuse.push_back( 0.8 );
        diffuse[3] = a;
        current_mat->setProperty( "diffuse", diffuse );
      }
      else if( element == "Tr" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        float a;
        s >> a;
        std::vector<float> diffuse( 4, 0.8 );
        if( current_mat->getProperty( "diffuse", diffuse ) )
          while( diffuse.size() < 4 )
            diffuse.push_back( 0.8 );
        diffuse[3] = 1.f - a;
        current_mat->setProperty( "diffuse", diffuse );
      }
      else if( element == "map_Kd" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        // texture image and params
        std::string item;
        bool image_found = false;
        while( !image_found && s )
        {
          s >> item;
          if( item == "-o" )
          {
            // FIXME might be less than 3 values and up to 4
            std::vector<float> tex_offset( 3 );
            s >> tex_offset[0] >> tex_offset[1] >> tex_offset[2];
            current_obj->setProperty( "texture_offset", tex_offset );
          }
          else if( item == "-s" )
          {
            // FIXME might be less than 3 values and up to 4
            std::vector<float> tex_scale( 3 );
            s >> tex_scale[0] >> tex_scale[1] >> tex_scale[2];
            current_obj->setProperty( "texture_scale", tex_scale );
          }
          else if( item == "-clamp" )
          {
            s >> item;
          }
          else // TODO: other values
          {
            std::string teximage_fname
              = carto::FileUtil::dirname( mtl_filename )
                + carto::FileUtil::separator() + item;
            Reader<carto::Volume<AimsRGBA> > r( teximage_fname );
            try
            {
              carto::rc_ptr<carto::Volume<AimsRGBA> > teximage( r.read() );
              std::map<int, carto::Object> palettes;
              mtl_dict->getProperty( "_texture_palettes", palettes );
              palettes[timestep] = carto::Object::value( teximage );
              mtl_dict->setProperty( "_texture_palettes", palettes );
            }
            catch( ... )
            {
              std::cout << "failed to read texture image " << teximage_fname
                << std::endl;
            }
          }
        }
      }
      else if( element == "illum" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        float illum;
        s >> illum;
        current_obj->setProperty( "illum", illum );
        // don't know what to do with this...
      }
      else if( element == "Ni" )
      {
        if( !current_obj )
        {
          std::cerr << "MTL error: no current object.\n";
          continue;
        }
        float ni;
        s >> ni;
        current_obj->setProperty( "optical_density", ni );
        // don't know what to do with this... (refraction index)
      }
      else
      {
        std::cout << "unrecognized MTL tag: " << element << std::endl;
      }
    }
 
    return mtl_dict;
  }
 
 
  template <long D, typename T>
  inline
  void WavefrontMeshReader<D,T>::setMtl( carto::Object mtl_dict,
                                         const std::string & mtl_objname,
                                         PythonHeader & hdr )
  {
    carto::Object m = mtl_dict->getProperty( mtl_objname );
    // merge all materials/texture properties
    carto::Object mat;
    try
    {
      // material can be defined both sides (.mtl, .minf)
      mat = m->getProperty( "material" );
      carto::Object minfmat = hdr.getProperty( "material" );
      mat->copyProperties( minfmat );
    }
    catch( ... )
    {
    }
 
    hdr.copyProperties( m );
    if( mat.get() )
      hdr.setProperty( "material", mat );
 
    if( mtl_dict->hasProperty( "_texture_palettes" ) )
    {
      carto::Object palettes = mtl_dict->getProperty( "_texture_palettes" );
      hdr.setProperty( "_texture_palettes", palettes );
    }
  }
 
 
  template <long D, typename T>
  inline
  void WavefrontMeshReader<D,T>::storeMesh(
    AimsTimeSurface<D,T>& thing,
    const std::vector<Point3df> & vertices,
    const std::vector<Point3df> &normals,
    const std::vector<AimsVector<uint, D> > & polygons,
    const std::vector<T> & texture,
    const std::vector<int> & normals_ind,
    const std::vector<int> & texture_ind, int timestep )
  {
    thing[timestep].vertex() = vertices;
    std::vector<Point3df> o_normals;
    if( normals_ind.size() != normals.size() )
      o_normals = normals;
    else
    {
      o_normals.resize( normals_ind.size() );
      // copy reordered normals
      for( int i=0, k=normals_ind.size(); i<k; ++i )
      {
        if( normals_ind[i] < 0 || normals_ind[i] >= static_cast<int>(vertices.size()) )
        {
          std::stringstream s;
          s << "normal index out of range: " << normals_ind[i] << " / "
            << vertices.size() << " at index " << i;
          throw carto::parse_error( s.str() , "", _name, i );
        }
        o_normals[i] = normals[normals_ind[i]];
      }
    }
    thing[timestep].normal() = o_normals;
    thing[timestep].polygon() = polygons;
 
    if( carto::DataTypeCode<T>::name()
        != carto::DataTypeCode<Void>::name() )
    {
      // copy reordered texture
      std::vector<T> o_texture;
      o_texture.resize( texture_ind.size() );
      for( int i=0, k=texture_ind.size(); i<k; ++i )
      {
        if( texture_ind[i] < 0
            || texture_ind[i] >= static_cast<int>(texture.size()) )
        {
          std::stringstream s;
          if( texture_ind[i] >= 0 )
          {
            s << "texture index out of range: " << texture_ind[i] << " / "
            << texture.size() << " at index " << i;
            throw carto::parse_error( s.str(), "", _name, i );
          }
          // ind < 0, just not used.
          o_texture[i] = texture[0];
        }
        else
          o_texture[i] = texture[texture_ind[i]];
      }
      thing[timestep].texture() = o_texture;
    }
  }
 
 
  template <long D, typename T>
  inline
  void WavefrontMeshReader<D,T>::read( AimsTimeSurface<D,T>& thing,
                             const carto::AllocatorContext & /*context*/,
                             carto::Object /*options*/ )
  {
    std::string filename = _name;
    WavefrontHeader hdr( _name );
    hdr.read();
 
    std::ifstream istr( filename.c_str(), std::ios::in );
    istr.unsetf( std::ios::skipws );
    if( !istr )
      soma::io_error::launchErrnoExcept( filename );
 
    istr.setf( std::ios::skipws );
    soma::IStreamDataSource ds( istr );
    thing.erase();
    std::string l;
    int line = 0;
 
    std::vector<Point3df> vertices, normals;
    std::vector<AimsVector<uint, D> > polygons;
    std::vector<T> texture;
    std::vector<int> normals_ind;
    std::vector<int> texture_ind;
    int timestep = 0;
    bool update_normals = false;
    carto::Object mtl_dict;
 
    while( ds && !ds.eof() )
    {
      if( !soma::StreamUtil::getline( ds, l ) )
      {
        if( ds.eof() )
          break;
        else
          throw soma::wrong_format_error( filename );
      }
      ++line;
 
      if( l.empty() )
        continue;
      if( l[0] == '#' )
        continue;
      std::stringstream s(l);
      std::string element;
      s >> element;
      if( element == "o" )
      {
        // new object / group
        if( timestep != 0 || !vertices.empty() )
        {
          storeMesh( thing, vertices, normals, polygons, texture, normals_ind,
                     texture_ind, timestep );
 
          if( thing[timestep].normal().size() != vertices.size() )
            update_normals = true;
          ++timestep;
          vertices.clear();
          normals.clear();
          polygons.clear();
          texture.clear();
          normals_ind.clear();
          texture_ind.clear();
        }
      }
      else if( element == "g" )
        continue; // TODO: groups
      else if( element == "s" )
        continue; // smoothing
      else if( element == "mtllib" )
      {
        std::string mtl_filename;
        mtl_filename = l.substr( s.tellg(), l.length() - s.tellg() );
        size_t i = 0;
        while( !mtl_filename.empty() && mtl_filename[i] == ' ' )
          ++i;
        mtl_filename = mtl_filename.substr( i, mtl_filename.length() - i );
        mtl_filename = carto::FileUtil::dirname( filename )
          + carto::FileUtil::separator() + mtl_filename;
        mtl_dict = readMtlFle( mtl_filename );
      }
      else if( element == "usemtl" )
      {
        std::string mtl_objname;
        mtl_objname = l.substr( s.tellg(), l.length() - s.tellg() );
        size_t i = 0;
        while( !mtl_objname.empty() && mtl_objname[i] == ' ' )
          ++i;
        mtl_objname = mtl_objname.substr( i, mtl_objname.length() - i );
        setMtl( mtl_dict, mtl_objname, hdr );
      }
      else if( element == "v" )
      {
        // vertex
        Point3df p;
        s >> p[0] >> p[1] >> p[2];
        vertices.push_back(p);
      }
      else if( element == "vn" )
      {
        // normal
        Point3df p;
        s >> p[0] >> p[1] >> p[2];
        normals.push_back(p);
      }
      else if( element == "vt" )
      {
        // texture
        T tex;
        _readTexture<T>::r( s, tex );
        texture.push_back(tex);
      }
      else if( element == "f" || (D == 2 && element == "l" ) ) // l for line (D=2)
      {
        // face
        std::string item;
        std::string::size_type pos, pos0;
        AimsVector<uint, D> poly;
        int pol;
        int tex;
        int norm;
        for( int p=0; p<D; ++p )
        {
          s >> item;
          pos0 = item.find( '/' );
          std::stringstream z( item.substr(0, pos0 ) );
          z >> pol;
          if( pol < 0 )
            poly[p] = vertices.size() + pol;
          else
            poly[p] = pol - 1; // nums start at 1
          if( pos0 == std::string::npos )
            continue;
 
          ++pos0;
          pos = item.find( '/', pos0 );
          if( carto::DataTypeCode<T>::name()
              != carto::DataTypeCode<Void>::name() )
          {
            std::stringstream z( item.substr(pos0, pos - pos0 ) );
            z >> tex;
            if( texture_ind.size() <= poly[p] )
              texture_ind.resize( poly[p] + 1, -1 );
            if( texture_ind[ poly[p] ] < 0 )
              texture_ind[ poly[p] ] = tex - 1; // (starts at 1)
            else if( texture_ind[ poly[p] ] != tex - 1 )
            {
              // same vertex is assigned a different texture:
              // we must duplicate the vertex
              vertices.push_back( vertices[ poly[p] ] );
              poly[p] = vertices.size() - 1;
              texture_ind.resize( poly[p] + 1, -1 );
              texture_ind[ poly[p] ] = tex - 1;
            }
          }
          else if( pos != pos0 )
            throw carto::parse_error( "malformed face", "", filename, line );
          if( pos == std::string::npos )
            continue;
          pos0 = pos + 1;
          std::stringstream n( item.substr( pos0, item.length() - pos0 ) );
          n >> norm;
          if( norm < 0 )
            norm = vertices.size() + norm + 1;
          if( normals_ind.size() <= poly[p] )
            normals_ind.resize( poly[p] + 1 );
          normals_ind[ poly[p] ] = norm - 1; // (starts at 1)
        }
        polygons.push_back( poly );
      }
      else
      {
        std::cerr << "unrecognized element: " << element << ", " << D << ", " << l << std::endl;
      }
    }
 
    /*
    std::cout << "wavefront vertices: " << vertices.size() << ", normals: " << normals.size() << ", polygons: " << polygons.size() << ", normals_ind: " << normals_ind.size() << std::endl;
    std::cout << "timestep: " << timestep << std::endl;
    */
 
    storeMesh( thing, vertices, normals, polygons, texture, normals_ind,
               texture_ind, timestep );
 
    if( update_normals || thing[timestep].normal().size() != vertices.size() )
      thing.updateNormals();
 
    // std::cout << "WAVEFRONT read OK\n";
 
    if( hdr.hasProperty( "filenames" ) )
      hdr.removeProperty( "filenames" );
    thing.setHeader( hdr );
  }
 
}
 
#endif