AxialSliceReplacement

This process replaces a too much distorted or damaged slice by a copy of the previous or the next slice from the original volume.

Parameters

Input_3dImage: 3D Volume ( input )

Click on .
Select the volume to be processed, for instance Test_volume_rat1_cresyl.ima.

Replaced_Slice_Number: Integer ( input )

Enter the number of the slice to be replaced, for instance 63.

Duplication_Strategy: Choice ( input )

Choose if you want to replace this slice by a copy of the previous (Before) or the next (After) slice from the original volume.

Output_3dImage: 3D Volume ( optional, output )

Click on .
Specify the output directory and enter the output file name, for instance Test_rp63bf_volume_rat1_cresyl.ima.
This parameter is optional. If you do not complete it, you will be notified by a warning message that the process will be going to overwrite the input volume.

Technical information

Toolbox : BrainRAT

User level : 0

Identifier : AxialSliceReplacement

File name : brainvisa/toolboxes/brainrat/processes/toolbox/AxialSliceReplacement.py

Supported file formats :

Input_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_3dImage :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image