FlipApplication

This process enables to flip a volume either in a mirror way or swapping coordinates.

Parameters

Input_3dImage: 3D Volume ( input )
Click on .
Select the volume to be flipped, for instance Test_volume_rat1_cresyl.ima.
Flip_Parameter_1: Choice ( input )
Choose the first flip mode among the list, for instance zz (swap the Z-axis i.e. reverse the Z-axis coordinates).
Concerning our demonstration data, it reverses the stack order of slices (from antero-posterior to postero-anterior relationship).
Flip_Parameter_2: Choice ( optional, input )
Choose the second flip mode among the list, for instance yy (swap the Y-axis i.e. reverse the Y-axis coordinates).
Concerning our demonstration data, it flips the volume in a horizontal mirror way.
This parameter is optional and by default set to None.
Flip_Parameter_3: Choice ( optional, input )
Choose the third flip mode among the list.
This parameter is optional and by default set to None.
Output_3dImage: 3D Volume ( optional, output )
Click on .
Specify the output directory and enter the output file name, for instance Test_flipzzyy_volume_rat1_cresyl.ima.
This parameter is optional. If you do not complete it, you will be notified by a warning message that the process will be going to overwrite the input volume.

Technical information

Toolbox : BrainRAT

User level : 0

Identifier : FlipApplication

File name : brainvisa/toolboxes/brainrat/processes/toolbox/FlipApplication.py

Supported file formats :

Input_3dImage :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
Output_3dImage :
gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image