FlipApplicationOnASlice

This process enables to flip one slice from a volume either in a mirror way or swapping coordinates.

Parameters

Input_3dImage: 3D Volume ( input )

Click on .
Select the volume containing the slice to be flipped, Test_volume_rat1_cresyl.ima.

Flip_Slice_Number: Integer ( input )

Enter the number of the slice to be flipped.

Flip_Parameter: Choice ( input )

Choose the flip mode among the list, for instance xx (swap the X-axis i.e. reverse the X-axis coordinates).
Concerning our demonstration data, it flips the slice number 23 in a vertical mirror way.
By default, this parameter is set to xx.

Output_3dImage: 3D Volume ( optional, output )

Click on .
Specify the output directory and enter the output file name, for instance Test_flip23xx_volume_rat1_cresyl.ima.
This parameter is optional. If you do not complete it, you will be notified by a warning message that the process will be going to overwrite the input volume.

Technical information

Toolbox : BrainRAT

User level : 0

Identifier : FlipApplicationOnASlice

File name : brainvisa/toolboxes/brainrat/processes/toolbox/FlipApplicationOnASlice.py

Supported file formats :

Input_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_3dImage :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image