Preprocess for PET Pipeline using MRI (spm12)

None

Parameters

pet_mean: PET mean ( input )

do_SUV: Boolean ( input )

delay_time: Float ( optional, input )

weight: Float ( optional, input )

dose_injected: Float ( optional, input )

pet_data: PET acquisition data ( optional, output )

pet_SUV: PET SUV ( optional, output )

t1mri: Raw T1 MRI ( input )

TPM_template: TPM template ( input )

mri_preprocess: Choice ( input )

masking_method: Choice ( input )

coregister_trm: T1MRI to PET transformation file ( output )

t1mri_bias_corrected: T1 MRI Bias Corrected ( output )

grey_mask: T1 MRI tissue probability mask ( output )

white_mask: T1 MRI tissue probability mask ( output )

csf_mask: T1 MRI tissue probability mask ( output )

forward_field: SPM deformation field ( output )

inverse_field: SPM deformation field ( output )

t1mri_nobias_moved_to_pet: T1 MRI Bias corrected NM ( output )

t1mri_nobias_deformed_to_mni: T1 MRI Bias corrected NM ( output )

segmentation_needed: Boolean ( input )

matter_masks_needed: Boolean ( input )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : PreprocessPETPipeline_spm12

File name : brainvisa/toolboxes/nuclearimaging/processes/subpipelines/PreprocessPETPipeline_spm12.py

Supported file formats :

pet_mean :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

pet_data :

JSON file, JSON file

pet_SUV :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

coregister_trm :

Transformation matrix, Transformation matrix

t1mri_bias_corrected :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

grey_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

forward_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

inverse_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_nobias_moved_to_pet :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_nobias_deformed_to_mni :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image