Freesurfer outputs To BrainVisa conversion pipeline, Light version

Please to refer to the following documentation: Freesurfer outputs To BrainVISA conversion pipeline

Parameters

anat: RawFreesurferAnat ( input )

icosphere_type: Choice ( optional, input )

nu: Nu FreesurferAnat ( input )

ribbon: Ribbon Freesurfer ( input )

leftPial: FreesurferType ( input )

leftWhite: FreesurferType ( input )

leftSphereReg: FreesurferType ( input )

leftThickness: FreesurferType ( input )

leftCurv: FreesurferType ( input )

leftAvgCurv: FreesurferType ( input )

leftCurvPial: FreesurferType ( input )

leftGyri: FreesurferGyriTexture ( input )

leftSulciGyri: FreesurferSulciGyriTexture ( optional, input )

rightPial: FreesurferType ( input )

rightWhite: FreesurferType ( input )

rightSphereReg: FreesurferType ( input )

rightThickness: FreesurferType ( input )

rightCurv: FreesurferType ( input )

rightAvgCurv: FreesurferType ( input )

rightCurvPial: FreesurferType ( input )

rightGyri: FreesurferGyriTexture ( input )

rightSulciGyri: FreesurferSulciGyriTexture ( optional, input )

Technical information

Toolbox : Freesurfer

User level : 1

Identifier : freesurferToBrainvisaConversionPipelineLight

File name : brainvisa/toolboxes/freesurfer/processes/Tools/freesurferToBrainvisaConversionPipelineLight.py

Supported file formats :

anat :

FreesurferMGZ, FreesurferMGZ

nu :

FreesurferMGZ, FreesurferMGZ

ribbon :

FreesurferMGZ, FreesurferMGZ

leftPial :

FreesurferPial, FreesurferPial

leftWhite :

FreesurferWhite, FreesurferWhite

leftSphereReg :

FreesurferSphereReg, FreesurferSphereReg

leftThickness :

FreesurferThickness, FreesurferThickness

leftCurv :

FreesurferCurv, FreesurferCurv

leftAvgCurv :

FreesurferAvgCurv, FreesurferAvgCurv

leftCurvPial :

FreesurferCurvPial, FreesurferCurvPial

leftGyri :

FreesurferParcellation, FreesurferParcellation

leftSulciGyri :

FreesurferParcellation, FreesurferParcellation

rightPial :

FreesurferPial, FreesurferPial

rightWhite :

FreesurferWhite, FreesurferWhite

rightSphereReg :

FreesurferSphereReg, FreesurferSphereReg

rightThickness :

FreesurferThickness, FreesurferThickness

rightCurv :

FreesurferCurv, FreesurferCurv

rightAvgCurv :

FreesurferAvgCurv, FreesurferAvgCurv

rightCurvPial :

FreesurferCurvPial, FreesurferCurvPial

rightGyri :

FreesurferParcellation, FreesurferParcellation

rightSulciGyri :

FreesurferParcellation, FreesurferParcellation