Import images of One Subject

Description

'
Import an image:

click PET_directory and choose the image your hard drive. (same for CT_directory and T1_directory).

Choose it in the selection boxe study

check detected fields in dicoms : center, subject, acquisition, tracer, reconstruction and reconDiam. These fields will allow you to more easily find your images then, so you just have to say something that has the most meaning for you.

Once all fields filled, the name of the file that will be created in the database appears. click OK .

click Run to import the image into the database.

Note: If this is not a multi-center study, it may be convenient (for later) use the "center" for the name of the group (that is certainly a little bidouillesque .. .). For example, you can specify Witness or MA etc ... Caution Always use the same spelling and the same case (ie upper / lower case) for this match from one subject to another.

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Parameters

database: Choice ( input )

PET_dynamic_to_import: Directory ( optional, input )

PET_mean_to_import: 4D Volume ( optional, input )

CT_to_import: 4D Volume ( optional, input )

T1MRI_to_import: 4D Volume ( optional, input )

study: Choice ( optional, input )

center: String ( input )

subject: String ( input )

acquisition: String ( input )

tracer: String ( optional, input )

PET_reconstruction: String ( optional, input )

CT_reconstruction: String ( optional, input )

import_only_if_PET_exists: Boolean ( input )

PET_dynamic_imported: PetSubject PET Dyn ( optional, output )

PET_mean_imported: PetSubject PET Mean ( optional, output )

CT_imported: PetSubject CT ( optional, output )

T1MRI_imported: Raw T1 MRI ( optional, output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : impOneSubject_Nii

File name : brainvisa/toolboxes/nuclearimaging/processes/old/import/impOneSubject_Nii.py

Supported file formats :
PET_dynamic_to_import :
Directory, Directory
PET_mean_to_import :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
CT_to_import :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
T1MRI_to_import :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
PET_dynamic_imported :
Directory, Directory
PET_mean_imported :
NIFTI-1 image, NIFTI-1 image
CT_imported :
NIFTI-1 image, NIFTI-1 image
T1MRI_imported :
gz compressed NIFTI-1 image, gz compressed NIFTI-1 image