Quantify spheres using activities

All reconstruction are quantified using ROI previously computed and AimsRoiFeatures

Parameters

run_parallele: Boolean ( input )

do_AimsRoiFeatures: Boolean ( input )

CT: Phantom CT ( optional, input )

center: String ( input )

Pets_mean: ListOf( Phantom PET Mean ) ( input )

CT2PetMeans: ListOf( CT to PET transformation file ) ( input )

sph_rois: Phantom ROI Sph ( input )

sph_roi_in_Noise: Phantom ROI Sph inNoise ( input )

jzkSpec: Phantom Spec ( input )

theoric_values: Phantom Theoric Values ( optional, output )

bkg_preparedActivity: Float ( input )

prepared activity in background unit is Mega bequerel

bkg_H_M_pre: String ( input )

backgrouND Hour of Mesure for the PREparation. eg: 16:13

bkg_residualActivity: Float ( input )

residual activity in background unit is Mega bequerel

bkg_H_M_res: String ( input )

backgrouND Hour of Mesure for the RESidual. eg: 16:34

sph_preparedActivity: Float ( input )

prepared activity in spheres unit is Mega bequerel

sph_H_M_pre: String ( input )

SPHere Hour of Mesure for the PREparation. eg: 15:50

sph_residualActivity: Float ( input )

residual activity in spheres unit is Mega bequerel

sph_H_M_res: String ( input )

SPHere Hour of Mesure for the RESidual. eg: 16:02

H_M_acq: String ( input )

Hour and Minutesfor the PET ACQuisition. eg 16:57

periode_isotope: Float ( input )

stats_inSpheres: ListOf( Phantom Activity Stats ) ( output )

stats_inNoise: ListOf( Phantom Noise Stats ) ( output )

stats_inGhosts: ListOf( Phantom ROI Sph Ghosts Stat ) ( input )

ratios_inSpheres: ListOf( Phantom Result ) ( output )

ratios_inGhosts: ListOf( Phantom Sph Ghosts Result ) ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 2

Identifier : jzkQuantifySph_fromActivity

File name : brainvisa/toolboxes/nuclearimaging/processes/jaszczak/jzkQuantifySph_fromActivity.py

Supported file formats :

CT :

NIFTI-1 image, NIFTI-1 image

Pets_mean :

NIFTI-1 image, NIFTI-1 image

CT2PetMeans :

Transformation matrix, Transformation matrix

sph_rois :

NIFTI-1 image, NIFTI-1 image

sph_roi_in_Noise :

NIFTI-1 image, NIFTI-1 image

jzkSpec :

CSV file, CSV file

theoric_values :

CSV file, CSV file

stats_inSpheres :

CSV file, CSV file

stats_inNoise :

CSV file, CSV file

stats_inGhosts :

CSV file, CSV file

ratios_inSpheres :

CSV file, CSV file

ratios_inGhosts :

CSV file, CSV file