compute Grey / White / CSF / Skull / Scalp Mask

None

Parameters

grey_native: T1 MRI tissue probability map ( input )

white_native: T1 MRI tissue probability map ( optional, input )

csf_native: T1 MRI tissue probability map ( optional, input )

skull_native: T1 MRI tissue probability map ( optional, input )

scalp_native: T1 MRI tissue probability map ( optional, input )

method: Choice ( input )

threshold: Float ( input )

grey_native_mask: T1 MRI tissue probability mask ( output )

white_mask: Boolean ( input )

white_native_mask: T1 MRI tissue probability mask ( optional, output )

CSF_mask: Boolean ( input )

csf_native_mask: T1 MRI tissue probability mask ( optional, output )

intracranial_labels: Boolean ( input )

intracranial_native_labels: T1 MRI intracranial labels ( optional, output )

intracranial_native_translation: T1 MRI intracranial labels translation ( optional, output )

skull_mask: Boolean ( input )

skull_native_mask: T1 MRI tissue probability mask ( optional, output )

scalp_mask: Boolean ( input )

scalp_native_mask: T1 MRI tissue probability mask ( optional, output )

resolve_equal_proba: Boolean ( input )

need_to_do: Boolean ( input )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : t1mriTissueMasks

File name : brainvisa/toolboxes/nuclearimaging/processes/utils/t1mriTissueMasks.py

Supported file formats :

grey_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

skull_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_native :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

grey_native_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

white_native_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

csf_native_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

intracranial_native_labels :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

intracranial_native_translation :

JSON file, JSON file

skull_native_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

scalp_native_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image