Tms Target Pipeline

TMS target positioning and stimulated zone calculation

Description

' This pipeline just chains the TMS Target and TMS Stimulation Zone processes. '

Parameters

head_mesh: Head Mesh ( input )

landmarks: TMS position file ( output )

nasion: Point3D ( optional, input )

vertex: Point3D ( optional, input )

inion: Point3D ( optional, input )

left_ear: Point3D ( optional, input )

right_ear: Point3D ( optional, input )

target: Point3D ( input )

target_texture: Texture ( output )

cone_mesh: Mesh ( output )

stimulation_zone: Bucket ( optional, output )

normal_mesh: Mesh ( optional, output )

target_line_mesh: Mesh ( optional, output )

base_radius: Float ( input )

depth: Float ( input )

grey_matter_mask: Grey White Mask ( optional, input )

view_results: Boolean ( input )

Technical information

Toolbox : TMS

User level : 0

Identifier : tmsTargetPipeline

File name : brainvisa/toolboxes/tms/processes/tmsTargetPipeline.py

Supported file formats :

head_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

landmarks :

TMS position file, TMS position file

target_texture :

Texture, Texture

cone_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

stimulation_zone :

Bucket, Bucket

normal_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

target_line_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

grey_matter_mask :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image